Wall clock time and date at job start Wed Apr 1 2020 05:13:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86804 * 119.99949 * 2 1 4 4 H 1.48492 * 109.47318 * 240.00342 * 3 2 1 5 5 H 1.48505 * 109.47053 * 0.02562 * 3 2 1 6 6 H 1.48501 * 109.47155 * 119.99924 * 3 2 1 7 7 C 1.37870 * 120.00278 * 180.02562 * 2 1 3 8 8 H 1.08004 * 120.00087 * 180.02562 * 7 2 1 9 9 C 1.50700 * 119.99942 * 359.97438 * 7 2 1 10 10 C 1.53002 * 109.47209 * 180.02562 * 9 7 2 11 11 C 1.53003 * 109.47008 * 180.02562 * 10 9 7 12 12 N 1.46498 * 109.46788 * 179.97438 * 11 10 9 13 13 S 1.65607 * 119.99651 * 165.00022 * 12 11 10 14 14 O 1.42097 * 106.40132 * 311.45977 * 13 12 11 15 15 O 1.42107 * 106.39904 * 178.54249 * 13 12 11 16 16 C 1.76199 * 107.21942 * 65.00149 * 13 12 11 17 17 C 1.38230 * 120.41280 * 269.72443 * 16 13 12 18 18 N 1.31852 * 120.78393 * 179.75555 * 17 16 13 19 19 C 1.31876 * 121.73471 * 0.53058 * 18 17 16 20 20 C 1.38277 * 120.75186 * 359.72929 * 19 18 17 21 21 Br 1.89097 * 120.42735 * 179.97438 * 20 19 18 22 22 C 1.38611 * 120.41449 * 89.99615 * 16 13 12 23 23 H 0.97004 * 119.99950 * 0.02562 * 1 2 3 24 24 H 1.08997 * 109.46829 * 60.00369 * 9 7 2 25 25 H 1.09001 * 109.47454 * 300.00853 * 9 7 2 26 26 H 1.08997 * 109.47357 * 60.00161 * 10 9 7 27 27 H 1.09004 * 109.47023 * 299.99973 * 10 9 7 28 28 H 1.08998 * 109.46989 * 60.00225 * 11 10 9 29 29 H 1.08992 * 109.47240 * 299.99949 * 11 10 9 30 30 H 0.96995 * 120.00383 * 344.99985 * 12 11 10 31 31 H 1.07999 * 119.60853 * 0.02562 * 17 16 13 32 32 H 1.08001 * 119.62325 * 179.75860 * 19 18 17 33 33 H 1.08010 * 120.79137 * 359.96085 * 22 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2511 -2.4991 -0.0005 10 6 2.2454 -3.6620 -0.0005 11 6 1.4804 -4.9871 -0.0012 12 7 2.4324 -6.1005 -0.0018 13 16 1.9176 -7.6303 0.3686 14 8 1.1546 -7.5188 1.5622 15 8 3.0532 -8.4760 0.2483 16 6 0.7939 -8.1230 -0.8960 17 6 -0.5585 -7.8672 -0.7689 18 7 -1.4052 -8.2284 -1.7129 19 6 -1.0037 -8.8523 -2.8032 20 6 0.3333 -9.1466 -2.9976 21 35 0.8989 -10.0421 -4.5641 22 6 1.2545 -8.7769 -2.0281 23 1 -0.4850 0.8401 -0.0004 24 1 0.6242 -2.5566 -0.8903 25 1 0.6247 -2.5570 0.8896 26 1 2.8720 -3.6043 0.8894 27 1 2.8721 -3.6042 -0.8906 28 1 0.8541 -5.0445 -0.8914 29 1 0.8535 -5.0451 0.8885 30 1 3.3643 -5.9417 -0.2192 31 1 -0.9255 -7.3617 0.1121 32 1 -1.7273 -9.1360 -3.5531 33 1 2.3053 -8.9933 -2.1526 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940695.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:13:54 Heat of formation + Delta-G solvation = -71.443308 kcal Electronic energy + Delta-G solvation = -19696.474681 eV Core-core repulsion = 16315.204277 eV Total energy + Delta-G solvation = -3381.270404 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -41.46682 -38.50946 -37.41136 -37.09999 -35.16932 -34.48108 -33.55939 -32.64265 -30.80328 -28.20942 -25.52850 -24.85661 -24.68655 -22.24642 -20.63600 -19.26186 -18.62227 -18.49855 -18.14259 -17.85051 -16.95255 -16.46465 -16.08471 -15.67749 -15.55272 -15.51299 -14.62219 -14.30100 -14.10912 -13.99604 -13.77228 -13.36280 -13.27022 -13.22902 -12.76387 -12.59812 -12.57212 -12.51773 -12.33287 -11.70523 -11.69381 -11.55595 -11.36736 -11.14665 -10.90547 -10.51559 -10.47255 -10.30534 -8.16991 -6.27086 -0.93352 -0.67665 -0.35685 0.23331 1.43314 1.45230 1.52960 1.79922 2.15780 2.43815 2.58379 3.00178 3.17099 3.21197 3.39595 3.50694 3.72355 3.87145 4.01612 4.27342 4.40130 4.47843 4.49968 4.68678 4.99618 5.01806 5.20296 5.24531 5.56718 5.78540 5.89530 6.03301 6.27959 6.36673 6.90290 7.42069 8.94347 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.014717 B = 0.002651 C = 0.002461 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1902.155361 B =10557.971733 C =11373.464672 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.961 3.039 4 H -0.267 1.267 5 H -0.286 1.286 6 H -0.268 1.268 7 C -0.543 4.543 8 H 0.062 0.938 9 C 0.021 3.979 10 C -0.105 4.105 11 C 0.118 3.882 12 N -1.102 6.102 13 S 2.725 3.275 14 O -0.973 6.973 15 O -0.971 6.971 16 C -0.731 4.731 17 C 0.206 3.794 18 N -0.501 5.501 19 C 0.185 3.815 20 C -0.177 4.177 21 Br -0.005 7.005 22 C 0.051 3.949 23 H 0.263 0.737 24 H -0.001 1.001 25 H -0.003 1.003 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.071 0.929 29 H 0.078 0.922 30 H 0.429 0.571 31 H 0.189 0.811 32 H 0.200 0.800 33 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.692 -23.401 -9.450 25.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.198 4.198 3 Si 0.786 3.214 4 H -0.192 1.192 5 H -0.212 1.212 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.080 0.920 9 C -0.017 4.017 10 C -0.144 4.144 11 C -0.008 4.008 12 N -0.865 5.865 13 S 2.812 3.188 14 O -0.963 6.963 15 O -0.961 6.961 16 C -0.819 4.819 17 C 0.047 3.953 18 N -0.210 5.210 19 C 0.026 3.974 20 C -0.259 4.259 21 Br 0.080 6.920 22 C 0.023 3.977 23 H 0.071 0.929 24 H 0.017 0.983 25 H 0.016 0.984 26 H 0.081 0.919 27 H 0.086 0.914 28 H 0.089 0.911 29 H 0.096 0.904 30 H 0.267 0.733 31 H 0.206 0.794 32 H 0.217 0.783 33 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.902 -23.980 -9.184 25.695 hybrid contribution 0.786 1.213 -0.444 1.512 sum 1.689 -22.768 -9.628 24.778 Atomic orbital electron populations 1.70077 1.07683 1.27742 1.51717 1.25927 0.95720 1.03194 0.94929 0.85568 0.78294 0.78462 0.79119 1.19188 1.21167 1.19340 1.21686 0.93672 0.92364 1.50379 0.91976 1.18993 0.94518 0.92654 0.95535 1.21620 0.98542 0.92173 1.02072 1.21409 0.91276 0.85824 1.02272 1.55247 1.19898 1.23138 1.88246 1.00986 0.72637 0.72017 0.73158 1.93587 1.73060 1.86307 1.43360 1.93574 1.49696 1.65788 1.87048 1.32043 1.13014 1.17703 1.19152 1.23104 0.87617 0.88244 0.96301 1.68078 1.38369 1.12243 1.02328 1.23758 0.93114 0.86758 0.93726 1.23159 0.97616 1.07546 0.97569 1.96827 1.90363 1.75301 1.29543 1.21600 1.01641 0.86263 0.88192 0.92853 0.98252 0.98428 0.91928 0.91431 0.91107 0.90376 0.73327 0.79377 0.78312 0.80596 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.23 13.29 21.44 0.28 -54.95 16 2 C 0.00 0.01 5.46 84.65 0.46 0.47 16 3 Si 0.96 43.07 29.54 68.60 2.03 45.10 16 4 H -0.27 -11.45 7.11 99.48 0.71 -10.75 16 5 H -0.29 -12.68 7.11 99.48 0.71 -11.97 16 6 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 7 C -0.54 -29.46 9.11 25.60 0.23 -29.22 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.18 16 9 C 0.02 1.02 4.97 29.85 0.15 1.17 16 10 C -0.10 -3.72 5.30 30.60 0.16 -3.56 16 11 C 0.12 3.31 6.22 86.38 0.54 3.85 16 12 N -1.10 -24.45 6.00 -187.50 -1.12 -25.57 16 13 S 2.72 62.05 5.75 -56.49 -0.32 61.72 16 14 O -0.97 -27.80 16.77 -128.00 -2.15 -29.95 16 15 O -0.97 -24.76 17.36 -128.00 -2.22 -26.98 16 16 C -0.73 -15.06 5.96 22.36 0.13 -14.93 16 17 C 0.21 4.46 10.69 84.69 0.90 5.37 16 18 N -0.50 -10.87 10.36 -195.77 -2.03 -12.89 16 19 C 0.18 3.17 10.95 84.70 0.93 4.10 16 20 C -0.18 -3.00 6.25 22.40 0.14 -2.86 16 21 Br 0.00 -0.07 33.74 -20.37 -0.69 -0.76 16 22 C 0.05 0.94 9.41 22.48 0.21 1.15 16 23 H 0.26 14.74 8.31 -92.71 -0.77 13.97 16 24 H 0.00 -0.05 8.14 -2.39 -0.02 -0.07 16 25 H 0.00 -0.14 8.14 -2.39 -0.02 -0.16 16 26 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 27 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 28 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.08 2.25 7.75 -2.39 -0.02 2.23 16 30 H 0.43 7.87 8.65 -96.75 -0.84 7.04 16 31 H 0.19 3.69 7.62 -2.91 -0.02 3.67 16 32 H 0.20 2.17 8.06 -2.91 -0.02 2.15 16 33 H 0.18 2.62 7.71 -2.91 -0.02 2.59 16 Total: -1.00 -69.50 325.00 -2.06 -71.55 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: 0.31 Total: 7.20 kcal Atomic # 6 Polarization: -38.33 SS G_CDS: 3.86 Total: -34.47 kcal Atomic # 7 Polarization: -90.55 SS G_CDS: -2.87 Total: -93.41 kcal Atomic # 8 Polarization: -52.56 SS G_CDS: -4.37 Total: -56.93 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Atomic # 16 Polarization: 62.05 SS G_CDS: -0.32 Total: 61.72 kcal Atomic # 35 Polarization: -0.07 SS G_CDS: -0.69 Total: -0.76 kcal Total: -69.50 -2.06 -71.55 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940695.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.110 kcal (2) G-P(sol) polarization free energy of solvation -69.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.056 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.443 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds