Wall clock time and date at job start Wed Apr 1 2020 05:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86806 * 119.99983 * 2 1 4 4 H 1.48499 * 109.47078 * 179.97438 * 3 2 1 5 5 H 1.48499 * 109.46730 * 299.99313 * 3 2 1 6 6 H 1.48500 * 109.47149 * 59.99668 * 3 2 1 7 7 C 1.37873 * 119.99916 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00082 * 180.02562 * 7 2 1 9 9 C 1.50704 * 120.00053 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47064 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.46958 * 180.02562 * 10 9 7 12 12 N 1.46503 * 109.47263 * 180.02562 * 11 10 9 13 13 S 1.65593 * 120.00288 * 164.80704 * 12 11 10 14 14 O 1.42103 * 106.40361 * 175.86946 * 13 12 11 15 15 O 1.42103 * 106.40088 * 308.78779 * 13 12 11 16 16 C 1.76200 * 107.22061 * 62.32504 * 13 12 11 17 17 C 1.38262 * 119.98820 * 242.46718 * 16 13 12 18 18 C 1.38199 * 120.01016 * 179.72415 * 17 16 13 19 19 C 1.38376 * 119.98676 * 0.54759 * 18 17 16 20 20 Cl 1.73593 * 120.01404 * 179.74667 * 19 18 17 21 21 C 1.38334 * 119.96996 * 359.72805 * 19 18 17 22 22 C 1.38219 * 119.97975 * 62.74024 * 16 13 12 23 23 N 1.48018 * 120.00141 * 359.97438 * 22 16 13 24 24 O 1.21795 * 120.00198 * 173.04746 * 23 22 16 25 25 O 1.21805 * 119.99648 * 353.03931 * 23 22 16 26 26 H 0.97002 * 119.99854 * 0.02562 * 1 2 3 27 27 H 1.09002 * 109.46820 * 59.99877 * 9 7 2 28 28 H 1.08996 * 109.47383 * 300.00009 * 9 7 2 29 29 H 1.09002 * 109.47087 * 60.00428 * 10 9 7 30 30 H 1.09002 * 109.47770 * 300.00504 * 10 9 7 31 31 H 1.08992 * 109.47491 * 60.00507 * 11 10 9 32 32 H 1.09004 * 109.47322 * 299.99945 * 11 10 9 33 33 H 0.97008 * 119.99463 * 344.80470 * 12 11 10 34 34 H 1.08001 * 119.99338 * 359.97438 * 17 16 13 35 35 H 1.07994 * 120.00627 * 180.24760 * 18 17 16 36 36 H 1.08002 * 120.00220 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.7091 1.3464 0.0006 5 1 1.8904 2.3963 -1.2126 6 1 1.8903 2.3965 1.2125 7 6 2.0044 -1.1940 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 6 1.4801 -4.9870 -0.0001 12 7 2.4321 -6.1006 0.0005 13 16 1.9179 -7.6293 0.3758 14 8 3.0378 -8.4851 0.1947 15 8 1.2104 -7.5245 1.6038 16 6 0.7334 -8.0952 -0.8426 17 6 -0.5720 -8.3594 -0.4718 18 6 -1.5028 -8.7193 -1.4279 19 6 -1.1253 -8.8261 -2.7548 20 17 -2.2923 -9.2845 -3.9554 21 6 0.1824 -8.5671 -3.1243 22 6 1.1112 -8.2017 -2.1679 23 7 2.5103 -7.9240 -2.5633 24 8 2.8745 -8.1392 -3.7054 25 8 3.2973 -7.4801 -1.7465 26 1 -0.4850 0.8401 -0.0004 27 1 0.6246 -2.5570 -0.8897 28 1 0.6239 -2.5567 0.8902 29 1 2.8718 -3.6043 0.8906 30 1 2.8719 -3.6044 -0.8894 31 1 0.8539 -5.0446 -0.8903 32 1 0.8531 -5.0451 0.8897 33 1 3.3637 -5.9424 -0.2190 34 1 -0.8654 -8.2807 0.5646 35 1 -2.5234 -8.9218 -1.1387 36 1 0.4775 -8.6500 -4.1599 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940720.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:05 Heat of formation + Delta-G solvation = -70.896112 kcal Electronic energy + Delta-G solvation = -26227.898795 eV Core-core repulsion = 22061.079805 eV Total energy + Delta-G solvation = -4166.818990 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.64509 -40.83178 -38.65132 -38.05846 -37.90772 -37.33710 -37.11379 -35.17597 -33.52216 -32.81531 -32.64497 -28.23189 -28.10358 -25.01390 -24.86104 -24.05593 -22.25325 -21.32240 -20.45474 -20.10040 -18.99873 -18.94375 -18.57142 -18.33228 -17.65518 -17.25177 -16.76027 -16.44731 -16.14959 -15.96663 -15.70299 -15.24322 -14.51527 -14.32111 -14.10042 -13.83054 -13.67377 -13.39833 -13.36940 -13.25775 -13.24373 -12.90923 -12.82133 -12.80356 -12.54295 -12.49767 -12.34991 -12.28344 -12.26260 -11.69979 -11.40070 -11.14464 -11.04177 -10.76235 -10.53656 -10.47692 -8.18817 -6.28295 -1.82042 -0.95632 -0.81720 -0.16394 -0.09272 0.56021 1.41416 1.42724 1.52742 1.55280 1.79887 2.42593 2.43535 2.74771 3.15430 3.16158 3.27629 3.43524 3.55780 3.83193 3.97704 4.09282 4.21236 4.22361 4.43210 4.49692 4.64608 4.74026 4.94970 4.98090 5.17395 5.21727 5.55465 5.75698 5.87237 5.97644 6.25450 6.27429 6.88304 7.40757 8.92996 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.011378 B = 0.003086 C = 0.002809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2460.383695 B = 9070.886478 C = 9965.295825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.002 3.998 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.279 1.279 6 H -0.279 1.279 7 C -0.541 4.541 8 H 0.060 0.940 9 C 0.023 3.977 10 C -0.105 4.105 11 C 0.120 3.880 12 N -1.094 6.094 13 S 2.713 3.287 14 O -0.963 6.963 15 O -0.966 6.966 16 C -0.642 4.642 17 C -0.001 4.001 18 C -0.060 4.060 19 C 0.008 3.992 20 Cl -0.008 7.008 21 C -0.060 4.060 22 C 0.038 3.962 23 N 0.014 4.986 24 O -0.129 6.129 25 O -0.165 6.165 26 H 0.263 0.737 27 H -0.002 1.002 28 H 0.001 0.999 29 H 0.063 0.937 30 H 0.061 0.939 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.431 0.569 34 H 0.198 0.802 35 H 0.205 0.795 36 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.086 -22.721 -5.899 24.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.196 4.196 3 Si 0.786 3.214 4 H -0.188 1.188 5 H -0.205 1.205 6 H -0.205 1.205 7 C -0.580 4.580 8 H 0.078 0.922 9 C -0.015 4.015 10 C -0.144 4.144 11 C -0.006 4.006 12 N -0.859 5.859 13 S 2.799 3.201 14 O -0.954 6.954 15 O -0.956 6.956 16 C -0.727 4.727 17 C -0.021 4.021 18 C -0.079 4.079 19 C -0.020 4.020 20 Cl 0.021 6.979 21 C -0.081 4.081 22 C -0.046 4.046 23 N 0.532 4.468 24 O -0.352 6.352 25 O -0.373 6.373 26 H 0.072 0.928 27 H 0.017 0.983 28 H 0.019 0.981 29 H 0.082 0.918 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.100 0.900 33 H 0.270 0.730 34 H 0.215 0.785 35 H 0.222 0.778 36 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -6.922 -23.330 -5.051 24.854 hybrid contribution 0.652 1.247 -1.114 1.795 sum -6.271 -22.084 -6.165 23.770 Atomic orbital electron populations 1.70077 1.07596 1.27624 1.51842 1.25902 0.95752 1.03108 0.94870 0.85462 0.79137 0.79139 0.77691 1.18770 1.20510 1.20477 1.21723 0.93623 0.92376 1.50234 0.92214 1.18985 0.94408 0.92516 0.95568 1.21615 0.98598 0.92254 1.01945 1.21395 0.91237 0.86110 1.01873 1.55356 1.20124 1.22735 1.87726 1.01449 0.72766 0.72789 0.73141 1.93620 1.49713 1.65735 1.86285 1.93590 1.75233 1.86582 1.40161 1.31167 1.16159 1.14805 1.10549 1.21575 0.87686 0.89324 1.03477 1.22191 1.03283 0.92972 0.89434 1.21130 0.90076 0.98382 0.92408 1.98470 1.55497 1.89549 1.54358 1.21187 0.90753 0.94463 1.01649 1.20409 0.81793 1.07931 0.94460 1.43830 1.03176 0.98900 1.00845 1.94524 1.82110 1.54218 1.04316 1.94507 1.50140 1.46328 1.46338 0.92813 0.98334 0.98083 0.91783 0.92053 0.91904 0.89974 0.73027 0.78499 0.77764 0.79761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.11 13.29 21.45 0.28 -54.83 16 2 C 0.00 0.09 5.46 84.65 0.46 0.55 16 3 Si 0.96 43.65 29.54 68.60 2.03 45.67 16 4 H -0.26 -11.50 7.11 99.48 0.71 -10.80 16 5 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 6 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 7 C -0.54 -29.98 9.11 25.60 0.23 -29.75 16 8 H 0.06 3.20 7.74 -2.91 -0.02 3.17 16 9 C 0.02 1.16 4.97 29.85 0.15 1.30 16 10 C -0.10 -4.01 5.30 30.59 0.16 -3.85 16 11 C 0.12 3.68 6.19 86.38 0.53 4.21 16 12 N -1.09 -30.27 4.67 -187.49 -0.87 -31.14 16 13 S 2.71 72.35 4.90 -56.49 -0.28 72.08 16 14 O -0.96 -30.61 15.33 -118.37 -1.81 -32.43 16 15 O -0.97 -27.96 16.54 -128.00 -2.12 -30.08 16 16 C -0.64 -13.60 5.82 22.27 0.13 -13.47 16 17 C 0.00 -0.01 9.55 22.27 0.21 0.20 16 18 C -0.06 -0.55 9.83 22.29 0.22 -0.33 16 19 C 0.01 0.10 6.32 22.33 0.14 0.24 16 20 Cl -0.01 -0.08 28.96 -2.72 -0.08 -0.16 16 21 C -0.06 -0.97 9.34 22.29 0.21 -0.76 16 22 C 0.04 0.83 6.80 36.37 0.25 1.08 16 23 N 0.01 0.40 4.45 -46.47 -0.21 0.19 16 24 O -0.13 -3.49 18.47 18.89 0.35 -3.14 16 25 O -0.16 -4.99 11.73 26.37 0.31 -4.68 16 26 H 0.26 14.62 8.31 -92.71 -0.77 13.85 16 27 H 0.00 -0.09 8.14 -2.39 -0.02 -0.11 16 28 H 0.00 0.04 8.14 -2.39 -0.02 0.02 16 29 H 0.06 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.06 2.28 8.14 -2.39 -0.02 2.26 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.78 16 32 H 0.08 2.46 7.81 -2.38 -0.02 2.44 16 33 H 0.43 11.43 7.45 -96.74 -0.72 10.71 16 34 H 0.20 1.94 7.34 -2.91 -0.02 1.92 16 35 H 0.21 0.24 8.06 -2.91 -0.02 0.22 16 36 H 0.19 2.36 7.63 -2.91 -0.02 2.34 16 Total: -1.00 -73.00 342.93 0.72 -72.28 By element: Atomic # 1 Polarization: 6.39 SS G_CDS: 0.42 Total: 6.81 kcal Atomic # 6 Polarization: -43.27 SS G_CDS: 2.70 Total: -40.57 kcal Atomic # 7 Polarization: -84.98 SS G_CDS: -0.80 Total: -85.78 kcal Atomic # 8 Polarization: -67.05 SS G_CDS: -3.27 Total: -70.33 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Atomic # 16 Polarization: 72.35 SS G_CDS: -0.28 Total: 72.08 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -0.08 Total: -0.16 kcal Total: -73.00 0.72 -72.28 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940720.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.381 kcal (2) G-P(sol) polarization free energy of solvation -73.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.724 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.277 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds