Wall clock time and date at job start Wed Apr 1 2020 05:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.53003 * 109.46965 * 2 1 4 4 N 1.46500 * 109.47107 * 179.97438 * 3 2 1 5 5 C 1.36871 * 119.99840 * 89.27379 * 4 3 2 6 6 H 1.08004 * 119.99912 * 35.71504 * 5 4 3 7 7 C 1.39015 * 120.00358 * 215.70156 * 5 4 3 8 8 N 1.31392 * 119.99601 * 19.60252 * 7 5 4 9 9 Si 1.86800 * 120.00083 * 199.59757 * 7 5 4 10 10 H 1.48497 * 109.47081 * 60.00412 * 9 7 5 11 11 H 1.48499 * 109.46861 * 180.02562 * 9 7 5 12 12 H 1.48499 * 109.47009 * 300.00200 * 9 7 5 13 13 C 1.34776 * 119.99765 * 269.28442 * 4 3 2 14 14 O 1.21753 * 119.99426 * 187.03850 * 13 4 3 15 15 C 1.46539 * 120.00610 * 7.03360 * 13 4 3 16 16 C 1.37999 * 126.23765 * 187.48671 * 15 13 4 17 17 C 1.39834 * 107.08896 * 179.88224 * 16 15 13 18 18 I 2.09504 * 126.06580 * 180.16464 * 17 16 15 19 19 C 1.35526 * 107.86984 * 0.37507 * 17 16 15 20 20 N 1.35618 * 108.87279 * 359.76713 * 19 17 16 21 21 H 0.97000 * 125.68565 * 180.02562 * 20 19 17 22 22 H 1.08998 * 109.46809 * 299.99803 * 1 2 3 23 23 H 1.08995 * 109.47187 * 59.99671 * 1 2 3 24 24 H 1.08998 * 109.46906 * 180.02562 * 1 2 3 25 25 H 1.08991 * 109.46849 * 239.99808 * 2 1 3 26 26 H 1.09003 * 109.47160 * 119.99682 * 2 1 3 27 27 H 1.09003 * 109.47163 * 59.99940 * 3 2 1 28 28 H 1.08995 * 109.46913 * 300.00128 * 3 2 1 29 29 H 0.96999 * 120.00062 * 184.93262 * 8 7 5 30 30 H 1.08002 * 126.45417 * 0.02562 * 16 15 13 31 31 H 1.07999 * 125.55769 * 179.78341 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4426 0.0006 5 6 4.1899 1.4274 -1.1844 6 1 3.8025 1.9625 -2.0388 7 6 5.3841 0.7235 -1.2881 8 7 5.6680 -0.2202 -0.4191 9 14 6.5852 1.1193 -2.6629 10 1 7.0129 2.5371 -2.5537 11 1 7.7723 0.2338 -2.5532 12 1 5.9250 0.9010 -3.9750 13 6 4.1784 1.4573 1.1680 14 8 5.3890 1.5866 1.1708 15 6 3.4535 1.3179 2.4339 16 6 3.9865 1.4590 3.6990 17 6 2.9466 1.2459 4.6092 18 53 3.0997 1.3231 6.6972 19 6 1.8230 0.9759 3.9011 20 7 2.1179 1.0167 2.5780 21 1 1.4920 0.8601 1.8536 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5139 -0.8899 24 1 -0.3633 -1.0277 0.0005 25 1 1.8933 -0.5138 -0.8899 26 1 1.8934 -0.5138 0.8900 27 1 1.6767 1.9564 0.8900 28 1 1.6767 1.9563 -0.8899 29 1 6.5310 -0.6622 -0.4476 30 1 5.0130 1.6924 3.9405 31 1 0.8513 0.7633 4.3219 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115341655.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:11 Heat of formation + Delta-G solvation = 54.882952 kcal Electronic energy + Delta-G solvation = -17216.624771 eV Core-core repulsion = 14359.628945 eV Total energy + Delta-G solvation = -2856.995825 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 348.008 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.04445 -37.98577 -35.48829 -32.96606 -31.74432 -31.30212 -29.11292 -27.45811 -25.94493 -24.64997 -21.85169 -20.99493 -19.99831 -19.37317 -17.60499 -16.40490 -15.38065 -14.87987 -14.41177 -14.13431 -13.91139 -13.47957 -12.93572 -12.81824 -12.48359 -12.14789 -11.77816 -11.61238 -11.51616 -11.23036 -11.08978 -10.84472 -10.62478 -10.52345 -10.20285 -10.06629 -9.58493 -9.00281 -8.42331 -8.34796 -7.71704 -7.29200 -6.20046 -3.92212 1.62106 2.22099 2.95742 3.28312 3.36046 3.38708 3.68103 4.22162 4.65932 4.81624 5.09646 5.15461 5.25921 5.37587 5.50263 5.55873 5.68159 5.80708 5.86255 6.03566 6.13758 6.26179 6.39231 6.44034 6.72965 7.03368 7.22834 7.49299 7.74844 8.11990 8.88218 9.05883 9.49650 10.14453 10.86208 Molecular weight = 348.01amu Principal moments of inertia in cm(-1) A = 0.021780 B = 0.003932 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1285.264655 B = 7119.575557 C = 8175.521748 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.159 4.159 3 C 0.087 3.913 4 N -0.447 5.447 5 C -0.343 4.343 6 H 0.084 0.916 7 C 0.065 3.935 8 N -0.817 5.817 9 Si 0.913 3.087 10 H -0.274 1.274 11 H -0.285 1.285 12 H -0.278 1.278 13 C 0.528 3.472 14 O -0.516 6.516 15 C 0.015 3.985 16 C -0.120 4.120 17 C -0.176 4.176 18 I -0.044 7.044 19 C 0.019 3.981 20 N -0.544 5.544 21 H 0.427 0.573 22 H 0.045 0.955 23 H 0.060 0.940 24 H 0.057 0.943 25 H 0.086 0.914 26 H 0.062 0.938 27 H 0.057 0.943 28 H 0.075 0.925 29 H 0.268 0.732 30 H 0.145 0.855 31 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.401 1.099 11.994 16.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.198 4.198 3 C -0.038 4.038 4 N -0.168 5.168 5 C -0.470 4.470 6 H 0.102 0.898 7 C -0.147 4.147 8 N -0.450 5.450 9 Si 0.739 3.261 10 H -0.199 1.199 11 H -0.211 1.211 12 H -0.203 1.203 13 C 0.315 3.685 14 O -0.392 6.392 15 C -0.102 4.102 16 C -0.147 4.147 17 C -0.324 4.324 18 I 0.104 6.896 19 C -0.120 4.120 20 N -0.151 5.151 21 H 0.277 0.723 22 H 0.064 0.936 23 H 0.079 0.921 24 H 0.076 0.924 25 H 0.104 0.896 26 H 0.081 0.919 27 H 0.075 0.925 28 H 0.094 0.906 29 H 0.079 0.921 30 H 0.162 0.838 31 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -10.634 1.012 13.232 17.005 hybrid contribution 0.115 -0.170 -2.055 2.065 sum -10.518 0.842 11.177 15.371 Atomic orbital electron populations 1.21838 0.96115 1.01806 1.01481 1.22224 0.94545 0.98813 1.04193 1.21929 0.85268 0.95429 1.01179 1.43230 1.02160 1.65905 1.05495 1.19023 1.07315 1.31382 0.89247 0.89840 1.25129 0.99071 0.93031 0.97475 1.69873 1.21824 1.18115 1.35219 0.86263 0.80284 0.78828 0.80705 1.19923 1.21088 1.20345 1.16572 0.86907 0.84186 0.80799 1.90671 1.12797 1.50669 1.85071 1.21487 0.82691 1.09005 0.96972 1.20941 0.98644 1.05793 0.89294 1.23347 0.96639 1.18590 0.93836 1.96387 1.99179 1.99037 0.95039 1.21676 0.99035 1.07883 0.83430 1.43765 1.10511 1.53172 1.07630 0.72333 0.93593 0.92093 0.92420 0.89565 0.91938 0.92536 0.90617 0.92141 0.83759 0.81764 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 48. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.78 37.16 0.36 -1.42 16 2 C -0.16 -2.58 5.27 -26.73 -0.14 -2.72 16 3 C 0.09 1.59 4.85 -4.04 -0.02 1.57 16 4 N -0.45 -10.86 2.56 -116.34 -0.30 -11.16 16 5 C -0.34 -9.10 9.32 -15.01 -0.14 -9.24 16 6 H 0.08 2.09 7.91 -52.48 -0.41 1.68 16 7 C 0.06 1.77 4.35 -17.45 -0.08 1.70 16 8 N -0.82 -23.83 11.24 55.50 0.62 -23.20 16 9 Si 0.91 21.42 29.60 -169.99 -5.03 16.38 16 10 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 11 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 12 H -0.28 -6.18 7.11 56.52 0.40 -5.78 16 13 C 0.53 13.67 6.76 -12.92 -0.09 13.58 16 14 O -0.52 -15.46 14.29 5.14 0.07 -15.39 16 15 C 0.01 0.32 6.61 -81.98 -0.54 -0.23 16 16 C -0.12 -2.40 10.64 -39.07 -0.42 -2.81 16 17 C -0.18 -2.92 6.51 -39.95 -0.26 -3.18 16 18 I -0.04 -0.58 40.67 -73.02 -2.97 -3.55 16 19 C 0.02 0.28 11.85 -16.85 -0.20 0.08 16 20 N -0.54 -9.20 4.30 -9.36 -0.04 -9.24 16 21 H 0.43 6.44 2.70 -40.82 -0.11 6.33 16 22 H 0.04 0.45 7.54 -51.93 -0.39 0.06 16 23 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 24 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 25 H 0.09 1.59 8.14 -51.93 -0.42 1.16 16 26 H 0.06 1.10 6.60 -51.93 -0.34 0.76 16 27 H 0.06 0.93 5.15 -51.93 -0.27 0.66 16 28 H 0.08 1.28 8.05 -51.93 -0.42 0.86 16 29 H 0.27 7.59 8.32 -40.82 -0.34 7.25 16 30 H 0.14 2.98 8.06 -52.49 -0.42 2.56 16 31 H 0.17 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 286.70 15.07 4.32 4.32 Total: -1.00 -31.53 286.70 -8.03 -39.56 By element: Atomic # 1 Polarization: 8.14 SS G_CDS: -3.19 Total: 4.95 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -1.52 Total: -2.67 kcal Atomic # 7 Polarization: -43.89 SS G_CDS: 0.29 Total: -43.60 kcal Atomic # 8 Polarization: -15.46 SS G_CDS: 0.07 Total: -15.39 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.03 Total: 16.38 kcal Atomic # 53 Polarization: -0.58 SS G_CDS: -2.97 Total: -3.55 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -31.53 -8.03 -39.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115341655.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.444 kcal (2) G-P(sol) polarization free energy of solvation -31.529 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.915 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.561 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds