Wall clock time and date at job start Wed Apr 1 2020 05:24:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47034 * 2 1 4 4 C 1.50698 * 109.46923 * 119.99460 * 2 1 3 5 5 H 1.08005 * 119.99644 * 120.00103 * 4 2 1 6 6 C 1.37871 * 120.00333 * 300.00222 * 4 2 1 7 7 N 1.31518 * 119.99894 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00220 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47185 * 90.00038 * 8 6 4 10 10 H 1.48504 * 109.47373 * 210.00003 * 8 6 4 11 11 H 1.48494 * 109.47168 * 330.00201 * 8 6 4 12 12 N 1.46501 * 109.47322 * 239.99281 * 2 1 3 13 13 C 1.46492 * 120.00173 * 300.00426 * 12 2 1 14 14 C 1.34777 * 119.99604 * 119.72150 * 12 2 1 15 15 O 1.21697 * 119.99818 * 6.25892 * 14 12 2 16 16 C 1.46679 * 119.99983 * 186.25140 * 14 12 2 17 17 C 1.37870 * 126.22650 * 187.96624 * 16 14 12 18 18 C 1.39861 * 107.08972 * 180.02562 * 17 16 14 19 19 I 2.09506 * 126.07644 * 179.97438 * 18 17 16 20 20 C 1.35485 * 107.85579 * 359.97438 * 18 17 16 21 21 N 1.35575 * 108.86014 * 359.73212 * 20 18 17 22 22 H 0.97000 * 125.67714 * 180.27120 * 21 20 18 23 23 H 1.09003 * 109.47044 * 60.00519 * 1 2 3 24 24 H 1.09005 * 109.47175 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47380 * 300.00417 * 1 2 3 26 26 H 0.97003 * 120.00169 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.47225 * 95.81026 * 13 12 2 28 28 H 1.09002 * 109.47080 * 215.81090 * 13 12 2 29 29 H 1.08996 * 109.47306 * 335.80625 * 13 12 2 30 30 H 1.08001 * 126.46205 * 0.02562 * 17 16 14 31 31 H 1.08004 * 125.57135 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9426 0.8298 2.6033 8 14 2.3212 -1.1201 4.0080 9 1 3.6295 -0.5456 4.4125 10 1 1.3429 -0.9490 5.1121 11 1 2.4857 -2.5659 3.7121 12 7 2.0184 -0.6908 -1.1961 13 6 1.6644 -2.0933 -1.4278 14 6 2.7886 -0.0342 -2.0861 15 8 3.1727 1.0946 -1.8423 16 6 3.1640 -0.6801 -3.3484 17 6 4.0629 -0.1967 -4.2752 18 6 4.1160 -1.1254 -5.3196 19 53 5.2976 -0.9775 -7.0433 20 6 3.2675 -2.1379 -5.0186 21 7 2.6875 -1.8821 -3.8202 22 1 2.0419 -2.4502 -3.3713 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.7085 1.1615 3.4843 27 1 0.7965 -2.1452 -2.0852 28 1 2.5047 -2.6077 -1.8942 29 1 1.4289 -2.5705 -0.4766 30 1 4.6211 0.7254 -4.2076 31 1 3.0865 -3.0090 -5.6309 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000115368920.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:14 Heat of formation + Delta-G solvation = 40.637043 kcal Electronic energy + Delta-G solvation = -16686.246006 eV Core-core repulsion = 13828.632431 eV Total energy + Delta-G solvation = -2857.613574 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 348.008 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.44160 -38.62521 -35.58361 -33.25253 -32.14374 -29.99106 -29.45058 -27.38503 -26.54833 -25.30548 -22.93341 -20.62330 -19.91754 -19.50971 -17.21794 -16.55729 -15.88943 -15.21837 -15.03229 -14.28195 -13.85450 -13.76745 -13.07773 -12.68764 -12.62018 -12.56049 -12.07054 -11.68406 -11.56955 -11.11818 -10.95597 -10.81525 -10.47645 -10.34522 -10.25845 -9.88631 -9.36861 -9.23850 -8.86118 -8.50857 -8.28448 -7.76189 -6.14890 -4.23586 1.28187 1.63894 2.47493 3.15548 3.22770 3.29799 3.30474 3.73592 3.87095 4.33323 4.87720 4.93578 5.16745 5.22657 5.26168 5.54055 5.70019 5.94920 6.05233 6.51365 6.62352 6.67359 6.76151 6.94212 7.21342 7.30570 7.42327 7.61375 7.91121 8.08560 8.33719 8.71446 8.87237 9.43120 10.90526 Molecular weight = 348.01amu Principal moments of inertia in cm(-1) A = 0.039672 B = 0.002725 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.613491 B =10271.261306 C =10304.908732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.259 3.741 3 H 0.066 0.934 4 C -0.529 4.529 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.886 5.886 8 Si 0.900 3.100 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.590 5.590 13 C 0.067 3.933 14 C 0.574 3.426 15 O -0.532 6.532 16 C -0.021 4.021 17 C -0.092 4.092 18 C -0.186 4.186 19 I -0.030 7.030 20 C 0.046 3.954 21 N -0.534 5.534 22 H 0.426 0.574 23 H 0.012 0.988 24 H 0.029 0.971 25 H 0.096 0.904 26 H 0.264 0.736 27 H 0.044 0.956 28 H 0.055 0.945 29 H 0.097 0.903 30 H 0.152 0.848 31 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.987 -8.686 -20.649 22.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.159 3.841 3 H 0.084 0.916 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.728 3.272 9 H -0.205 1.205 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.321 5.321 13 C -0.078 4.078 14 C 0.361 3.639 15 O -0.409 6.409 16 C -0.136 4.136 17 C -0.119 4.119 18 C -0.333 4.333 19 I 0.117 6.883 20 C -0.094 4.094 21 N -0.138 5.138 22 H 0.273 0.727 23 H 0.031 0.969 24 H 0.048 0.952 25 H 0.114 0.886 26 H 0.074 0.926 27 H 0.063 0.937 28 H 0.073 0.927 29 H 0.115 0.885 30 H 0.169 0.831 31 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 5.739 -7.940 -21.356 23.495 hybrid contribution -0.727 -1.000 2.014 2.363 sum 5.012 -8.940 -19.342 21.890 Atomic orbital electron populations 1.22111 0.97963 0.99441 1.01040 1.19020 0.90875 0.94619 0.79584 0.91575 1.21280 1.32082 1.13205 0.90229 0.92226 1.24889 0.94808 0.94964 0.99008 1.69872 1.36067 1.22522 1.23930 0.86471 0.78738 0.79778 0.82248 1.20494 1.21072 1.19959 1.48184 1.49167 1.10942 1.23788 1.21899 0.97989 0.84322 1.03569 1.17062 0.79464 0.85705 0.81711 1.90816 1.54575 1.18408 1.77098 1.20927 1.04595 0.89291 0.98801 1.21094 0.99157 0.99847 0.91830 1.23500 1.08234 1.00999 1.00563 1.96520 1.65923 1.99071 1.26772 1.21839 0.98061 1.00557 0.88977 1.43298 1.35132 1.18383 1.16958 0.72727 0.96927 0.95169 0.88572 0.92553 0.93747 0.92676 0.88489 0.83078 0.80963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 8.97 37.16 0.33 -3.05 16 2 C 0.26 6.42 2.62 -69.08 -0.18 6.23 16 3 H 0.07 1.92 6.91 -51.93 -0.36 1.56 16 4 C -0.53 -13.91 7.95 -34.44 -0.27 -14.18 16 5 H 0.06 1.54 7.43 -52.48 -0.39 1.15 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.53 11.32 55.43 0.63 -23.91 16 8 Si 0.90 20.61 29.54 -169.99 -5.02 15.59 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.46 7.11 56.52 0.40 -6.05 16 11 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 12 N -0.59 -12.14 2.75 -176.81 -0.49 -12.63 16 13 C 0.07 1.01 7.73 59.84 0.46 1.47 16 14 C 0.57 12.03 7.63 -12.85 -0.10 11.94 16 15 O -0.53 -13.28 16.24 5.19 0.08 -13.20 16 16 C -0.02 -0.35 6.63 -81.99 -0.54 -0.89 16 17 C -0.09 -1.42 10.64 -39.11 -0.42 -1.84 16 18 C -0.19 -2.36 6.51 -39.96 -0.26 -2.62 16 19 I -0.03 -0.32 40.67 -73.02 -2.97 -3.29 16 20 C 0.05 0.50 11.85 -16.88 -0.20 0.30 16 21 N -0.53 -6.52 5.07 -9.38 -0.05 -6.57 16 22 H 0.43 4.25 4.92 -40.82 -0.20 4.05 16 23 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 24 H 0.03 0.63 7.67 -51.93 -0.40 0.23 16 25 H 0.10 2.45 6.07 -51.93 -0.32 2.13 16 26 H 0.26 6.97 8.31 -40.82 -0.34 6.63 16 27 H 0.04 0.55 7.45 -51.93 -0.39 0.16 16 28 H 0.06 0.70 5.68 -51.93 -0.29 0.41 16 29 H 0.10 1.57 7.11 -51.93 -0.37 1.20 16 30 H 0.15 2.40 8.06 -52.49 -0.42 1.97 16 31 H 0.17 1.26 8.06 -52.48 -0.42 0.84 16 LS Contribution 288.56 15.07 4.35 4.35 Total: -1.00 -30.47 288.56 -7.85 -38.32 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -3.12 Total: 2.30 kcal Atomic # 6 Polarization: 0.30 SS G_CDS: -1.27 Total: -0.97 kcal Atomic # 7 Polarization: -43.20 SS G_CDS: 0.09 Total: -43.11 kcal Atomic # 8 Polarization: -13.28 SS G_CDS: 0.08 Total: -13.20 kcal Atomic # 14 Polarization: 20.61 SS G_CDS: -5.02 Total: 15.59 kcal Atomic # 53 Polarization: -0.32 SS G_CDS: -2.97 Total: -3.29 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -30.47 -7.85 -38.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115368920.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.956 kcal (2) G-P(sol) polarization free energy of solvation -30.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.319 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds