Wall clock time and date at job start Wed Apr 1 2020 05:24:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47034 * 2 1 4 4 C 1.50698 * 109.46923 * 119.99460 * 2 1 3 5 5 H 1.08005 * 119.99644 * 120.00103 * 4 2 1 6 6 C 1.37871 * 120.00333 * 300.00222 * 4 2 1 7 7 N 1.31518 * 119.99894 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 120.00220 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47185 * 90.00038 * 8 6 4 10 10 H 1.48504 * 109.47373 * 210.00003 * 8 6 4 11 11 H 1.48494 * 109.47168 * 330.00201 * 8 6 4 12 12 N 1.46501 * 109.47322 * 239.99281 * 2 1 3 13 13 C 1.46492 * 120.00173 * 300.00426 * 12 2 1 14 14 C 1.34777 * 119.99604 * 119.72150 * 12 2 1 15 15 O 1.21697 * 119.99818 * 6.25892 * 14 12 2 16 16 C 1.46679 * 119.99983 * 186.25140 * 14 12 2 17 17 C 1.37870 * 126.22650 * 187.96624 * 16 14 12 18 18 C 1.39861 * 107.08972 * 180.02562 * 17 16 14 19 19 I 2.09506 * 126.07644 * 179.97438 * 18 17 16 20 20 C 1.35485 * 107.85579 * 359.97438 * 18 17 16 21 21 N 1.35575 * 108.86014 * 359.73212 * 20 18 17 22 22 H 0.97000 * 125.67714 * 180.27120 * 21 20 18 23 23 H 1.09003 * 109.47044 * 60.00519 * 1 2 3 24 24 H 1.09005 * 109.47175 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47380 * 300.00417 * 1 2 3 26 26 H 0.97003 * 120.00169 * 180.02562 * 7 6 4 27 27 H 1.09004 * 109.47225 * 95.81026 * 13 12 2 28 28 H 1.09002 * 109.47080 * 215.81090 * 13 12 2 29 29 H 1.08996 * 109.47306 * 335.80625 * 13 12 2 30 30 H 1.08001 * 126.46205 * 0.02562 * 17 16 14 31 31 H 1.08004 * 125.57135 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2305 5 1 2.6532 -1.5884 1.1315 6 6 1.6992 -0.2392 2.4827 7 7 0.9426 0.8298 2.6033 8 14 2.3212 -1.1201 4.0080 9 1 3.6295 -0.5456 4.4125 10 1 1.3429 -0.9490 5.1121 11 1 2.4857 -2.5659 3.7121 12 7 2.0184 -0.6908 -1.1961 13 6 1.6644 -2.0933 -1.4278 14 6 2.7886 -0.0342 -2.0861 15 8 3.1727 1.0946 -1.8423 16 6 3.1640 -0.6801 -3.3484 17 6 4.0629 -0.1967 -4.2752 18 6 4.1160 -1.1254 -5.3196 19 53 5.2976 -0.9775 -7.0433 20 6 3.2675 -2.1379 -5.0186 21 7 2.6875 -1.8821 -3.8202 22 1 2.0419 -2.4502 -3.3713 23 1 -0.3633 0.5138 -0.8901 24 1 -0.3634 -1.0277 0.0005 25 1 -0.3634 0.5139 0.8899 26 1 0.7085 1.1615 3.4843 27 1 0.7965 -2.1452 -2.0852 28 1 2.5047 -2.6077 -1.8942 29 1 1.4289 -2.5705 -0.4766 30 1 4.6211 0.7254 -4.2076 31 1 3.0865 -3.0090 -5.6309 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000115368920.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:13 Heat of formation + Delta-G solvation = 21.605093 kcal Electronic energy + Delta-G solvation = -16687.071293 eV Core-core repulsion = 13828.632431 eV Total energy + Delta-G solvation = -2858.438862 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 348.008 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -42.57784 -40.19818 -37.31276 -35.01763 -33.36716 -31.60711 -30.74151 -28.50442 -27.91069 -27.32574 -24.42860 -22.05986 -21.13428 -20.82021 -18.63517 -18.43315 -17.49622 -16.83432 -16.47744 -15.97436 -15.11898 -14.89590 -14.67895 -14.38370 -14.09106 -13.67057 -13.59022 -13.22775 -12.95295 -12.80745 -12.77528 -12.67703 -12.23094 -12.13104 -11.41169 -11.24465 -11.04042 -10.74431 -10.55127 -9.94459 -9.56017 -9.22934 -8.17286 -6.34158 0.32946 0.41696 1.40565 1.42644 1.43443 1.51856 2.00422 2.24686 2.39747 2.47149 3.11373 3.64135 4.05916 4.06848 4.19942 4.40761 4.57205 4.70795 4.83449 4.84558 4.86762 5.00781 5.39357 5.43029 5.46077 5.60907 5.67536 5.99188 6.11819 6.34298 6.66303 6.73153 7.19295 7.39110 8.87278 Molecular weight = 348.01amu Principal moments of inertia in cm(-1) A = 0.039672 B = 0.002725 C = 0.002716 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 705.613491 B =10271.261306 C =10304.908732 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.262 3.738 3 H 0.009 0.991 4 C -0.540 4.540 5 H 0.062 0.938 6 C 0.017 3.983 7 N -0.916 5.916 8 Si 0.965 3.035 9 H -0.284 1.284 10 H -0.280 1.280 11 H -0.260 1.260 12 N -0.596 5.596 13 C 0.060 3.940 14 C 0.566 3.434 15 O -0.592 6.592 16 C -0.052 4.052 17 C -0.093 4.093 18 C -0.207 4.207 19 I -0.006 7.006 20 C 0.086 3.914 21 N -0.520 5.520 22 H 0.438 0.562 23 H 0.020 0.980 24 H 0.051 0.949 25 H 0.069 0.931 26 H 0.265 0.735 27 H 0.081 0.919 28 H 0.083 0.917 29 H 0.088 0.912 30 H 0.135 0.865 31 H 0.221 0.779 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.945 -11.870 -22.285 25.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.161 3.839 3 H 0.027 0.973 4 C -0.579 4.579 5 H 0.080 0.920 6 C -0.183 4.183 7 N -0.555 5.555 8 Si 0.790 3.210 9 H -0.211 1.211 10 H -0.205 1.205 11 H -0.184 1.184 12 N -0.326 5.326 13 C -0.082 4.082 14 C 0.356 3.644 15 O -0.474 6.474 16 C -0.166 4.166 17 C -0.122 4.122 18 C -0.352 4.352 19 I 0.140 6.860 20 C -0.056 4.056 21 N -0.124 5.124 22 H 0.287 0.713 23 H 0.039 0.961 24 H 0.070 0.930 25 H 0.088 0.912 26 H 0.074 0.926 27 H 0.099 0.901 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.153 0.847 31 H 0.237 0.763 Dipole moment (debyes) X Y Z Total from point charges 5.668 -11.182 -22.997 26.192 hybrid contribution -0.654 -0.013 2.373 2.461 sum 5.014 -11.195 -20.624 23.997 Atomic orbital electron populations 1.21883 0.96593 1.00447 1.00119 1.18611 0.91831 0.92235 0.81269 0.97255 1.21548 1.32053 1.13239 0.91042 0.92002 1.25723 0.94968 0.95624 1.02009 1.70017 1.37101 1.23830 1.24538 0.85455 0.77718 0.79266 0.78569 1.21055 1.20505 1.18388 1.48120 1.49005 1.12971 1.22472 1.22202 1.00599 0.81088 1.04311 1.17644 0.78579 0.85212 0.82974 1.90766 1.56888 1.21088 1.78653 1.20121 1.07119 0.91687 0.97682 1.21130 0.98542 0.99829 0.92691 1.23715 1.09568 1.00927 1.01031 1.96540 1.65551 1.99141 1.24782 1.22572 0.94936 1.00466 0.87593 1.43166 1.35055 1.16911 1.17293 0.71310 0.96064 0.92984 0.91229 0.92555 0.90129 0.89911 0.89311 0.84713 0.76281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.16 8.97 71.98 0.65 -5.51 16 2 C 0.26 13.47 2.62 44.24 0.12 13.59 16 3 H 0.01 0.59 6.91 -2.39 -0.02 0.57 16 4 C -0.54 -28.88 7.95 25.60 0.20 -28.67 16 5 H 0.06 3.19 7.43 -2.91 -0.02 3.17 16 6 C 0.02 0.90 5.30 84.65 0.45 1.35 16 7 N -0.92 -52.24 11.32 21.45 0.24 -51.99 16 8 Si 0.96 42.40 29.54 68.60 2.03 44.43 16 9 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 10 H -0.28 -11.97 7.11 99.48 0.71 -11.26 16 11 H -0.26 -10.71 7.11 99.48 0.71 -10.01 16 12 N -0.60 -24.75 2.75 -831.54 -2.29 -27.04 16 13 C 0.06 1.70 7.73 127.77 0.99 2.68 16 14 C 0.57 24.49 7.63 86.45 0.66 25.15 16 15 O -0.59 -31.67 16.24 -4.34 -0.07 -31.74 16 16 C -0.05 -1.67 6.63 40.35 0.27 -1.40 16 17 C -0.09 -2.86 10.64 22.58 0.24 -2.62 16 18 C -0.21 -4.71 6.51 22.03 0.14 -4.57 16 19 I -0.01 -0.12 40.67 -18.82 -0.77 -0.89 16 20 C 0.09 1.49 11.85 83.48 0.99 2.48 16 21 N -0.52 -10.96 5.07 -183.57 -0.93 -11.89 16 22 H 0.44 6.89 4.92 -92.71 -0.46 6.43 16 23 H 0.02 0.90 8.14 -2.39 -0.02 0.88 16 24 H 0.05 2.14 7.67 -2.38 -0.02 2.12 16 25 H 0.07 3.64 6.07 -2.39 -0.01 3.63 16 26 H 0.27 14.33 8.31 -92.71 -0.77 13.56 16 27 H 0.08 1.69 7.45 -2.38 -0.02 1.68 16 28 H 0.08 1.85 5.68 -2.39 -0.01 1.83 16 29 H 0.09 2.68 7.11 -2.39 -0.02 2.67 16 30 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 31 H 0.22 1.76 8.06 -2.91 -0.02 1.73 16 Total: -1.00 -70.78 288.56 3.62 -67.15 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: 0.71 Total: 9.49 kcal Atomic # 6 Polarization: -2.22 SS G_CDS: 4.70 Total: 2.48 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -2.98 Total: -90.93 kcal Atomic # 8 Polarization: -31.67 SS G_CDS: -0.07 Total: -31.74 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.43 kcal Atomic # 53 Polarization: -0.12 SS G_CDS: -0.77 Total: -0.89 kcal Total: -70.78 3.62 -67.15 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000115368920.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.757 kcal (2) G-P(sol) polarization free energy of solvation -70.776 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.982 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.623 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.152 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds