Wall clock time and date at job start Wed Apr 1 2020 05:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38230 * 119.99035 * 2 1 4 4 C 1.38332 * 119.98434 * 180.27561 * 3 2 1 5 5 Cl 1.73603 * 120.01772 * 179.77050 * 4 3 2 6 6 C 1.38381 * 119.97474 * 359.74319 * 4 3 2 7 7 N 1.48012 * 120.01091 * 180.02562 * 6 4 3 8 8 O 1.21799 * 120.00419 * 179.97438 * 7 6 4 9 9 O 1.21813 * 119.99703 * 359.97438 * 7 6 4 10 10 C 1.38193 * 119.98102 * 0.02562 * 6 4 3 11 11 C 1.38221 * 119.99201 * 179.75065 * 2 1 3 12 12 S 1.76199 * 119.98608 * 359.97381 * 11 2 1 13 13 O 1.42098 * 106.39920 * 176.75991 * 12 11 2 14 14 O 1.42101 * 106.40541 * 309.68098 * 12 11 2 15 15 N 1.65603 * 107.21656 * 63.22374 * 12 11 2 16 16 C 1.46494 * 120.00153 * 62.24938 * 15 12 11 17 17 C 1.53007 * 109.47054 * 164.28844 * 16 15 12 18 18 C 1.50694 * 109.46965 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00295 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99751 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99750 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99882 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46807 * 90.00627 * 22 20 18 24 24 H 1.48506 * 109.47212 * 210.00177 * 22 20 18 25 25 H 1.48494 * 109.47458 * 330.00204 * 22 20 18 26 26 H 1.09003 * 109.47119 * 264.65755 * 1 2 3 27 27 H 1.09001 * 109.47626 * 24.65783 * 1 2 3 28 28 H 1.08995 * 109.47440 * 144.66132 * 1 2 3 29 29 H 1.07996 * 120.01278 * 0.04408 * 3 2 1 30 30 H 1.07998 * 119.99139 * 179.97438 * 10 6 4 31 31 H 0.97002 * 119.99161 * 242.25265 * 15 12 11 32 32 H 1.09005 * 109.46809 * 284.28266 * 16 15 12 33 33 H 1.09000 * 109.47517 * 44.28685 * 16 15 12 34 34 H 1.08997 * 109.46472 * 299.99930 * 17 16 15 35 35 H 1.09000 * 109.47089 * 59.99579 * 17 16 15 36 36 H 0.97003 * 119.99694 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1972 0.0000 4 6 3.5813 1.1971 -0.0058 5 17 4.4499 2.7002 -0.0118 6 6 4.2725 -0.0017 -0.0062 7 7 5.7526 -0.0028 -0.0117 8 8 6.3609 -1.0580 -0.0116 9 8 6.3624 1.0517 -0.0165 10 6 3.5805 -1.1979 -0.0013 11 6 2.1979 -1.1971 0.0052 12 16 1.3164 -2.7227 0.0125 13 8 2.2940 -3.7513 -0.0602 14 8 0.3624 -2.6299 1.0616 15 7 0.4535 -2.7970 -1.3990 16 6 1.1536 -2.8065 -2.6858 17 6 0.1940 -3.2667 -3.7851 18 6 0.9140 -3.2758 -5.1089 19 1 1.9520 -2.9823 -5.1611 20 6 0.2475 -3.6589 -6.2535 21 7 0.8757 -3.6664 -7.4088 22 14 -1.5477 -4.1673 -6.1630 23 1 -2.4104 -2.9744 -6.3582 24 1 -1.8340 -5.1644 -7.2257 25 1 -1.8259 -4.7673 -4.8335 26 1 -0.3633 -0.0957 1.0232 27 1 -0.3634 0.9339 -0.4287 28 1 -0.3634 -0.8383 -0.5944 29 1 1.6580 2.1325 0.0007 30 1 4.1198 -2.1336 -0.0020 31 1 -0.5154 -2.8342 -1.3736 32 1 1.5107 -1.8018 -2.9125 33 1 2.0009 -3.4901 -2.6335 34 1 -0.1631 -4.2712 -3.5583 35 1 -0.6533 -2.5830 -3.8374 36 1 0.4069 -3.9363 -8.2140 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000133781345.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:11 Heat of formation + Delta-G solvation = -50.067914 kcal Electronic energy + Delta-G solvation = -26165.404329 eV Core-core repulsion = 21999.488517 eV Total energy + Delta-G solvation = -4165.915812 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.43997 -40.24076 -37.53663 -37.42319 -36.70223 -36.07800 -35.92055 -33.97500 -32.83120 -32.04499 -29.93937 -29.13484 -25.54604 -24.77634 -24.33250 -22.59625 -21.14477 -20.39094 -19.32203 -18.93889 -17.83726 -17.70189 -17.08689 -17.02962 -16.79009 -16.65827 -15.63792 -15.02005 -14.98970 -14.48767 -14.35863 -14.21048 -13.63786 -13.50555 -13.09913 -12.77050 -12.75371 -12.47215 -12.39266 -12.29238 -12.24430 -12.15827 -11.77653 -11.66408 -11.52101 -11.36440 -11.28990 -10.80336 -10.63157 -10.23882 -10.07312 -10.00814 -9.96233 -9.46280 -9.31923 -8.70760 -6.20478 -4.21903 -0.70515 -0.15201 0.14995 0.87178 0.89552 1.24099 2.28260 2.81680 3.17896 3.27425 3.28001 3.41294 3.54827 3.80929 3.94736 4.09170 4.29398 4.43153 4.52276 4.69802 4.83468 4.91563 5.01632 5.12712 5.22321 5.31340 5.41490 5.62823 5.82768 6.01019 6.06617 6.30191 6.92454 6.96358 7.09210 7.40578 7.56106 8.31399 8.81813 9.39223 10.92297 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.003418 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.867137 B = 8190.212568 C = 8855.643535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.085 3.915 3 C -0.136 4.136 4 C 0.066 3.934 5 Cl 0.006 6.994 6 C -0.072 4.072 7 N 0.029 4.971 8 O -0.152 6.152 9 O -0.138 6.138 10 C 0.064 3.936 11 C -0.683 4.683 12 S 2.697 3.303 13 O -0.943 6.943 14 O -0.953 6.953 15 N -1.110 6.110 16 C 0.123 3.877 17 C -0.016 4.016 18 C -0.529 4.529 19 H 0.075 0.925 20 C 0.071 3.929 21 N -0.896 5.896 22 Si 0.880 3.120 23 H -0.277 1.277 24 H -0.286 1.286 25 H -0.264 1.264 26 H 0.113 0.887 27 H 0.097 0.903 28 H 0.088 0.912 29 H 0.166 0.834 30 H 0.182 0.818 31 H 0.419 0.581 32 H 0.059 0.941 33 H 0.078 0.922 34 H 0.028 0.972 35 H 0.020 0.980 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.551 11.504 17.766 21.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.084 3.916 3 C -0.156 4.156 4 C 0.037 3.963 5 Cl 0.036 6.964 6 C -0.157 4.157 7 N 0.551 4.449 8 O -0.366 6.366 9 O -0.357 6.357 10 C 0.044 3.956 11 C -0.766 4.766 12 S 2.781 3.219 13 O -0.933 6.933 14 O -0.943 6.943 15 N -0.874 5.874 16 C -0.001 4.001 17 C -0.055 4.055 18 C -0.568 4.568 19 H 0.094 0.906 20 C -0.131 4.131 21 N -0.534 5.534 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.212 1.212 25 H -0.189 1.189 26 H 0.132 0.868 27 H 0.116 0.884 28 H 0.107 0.893 29 H 0.184 0.816 30 H 0.200 0.800 31 H 0.255 0.745 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.046 0.954 35 H 0.038 0.962 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -0.936 11.015 18.218 21.310 hybrid contribution -0.516 0.661 -0.534 0.994 sum -1.452 11.677 17.684 21.241 Atomic orbital electron populations 1.21528 0.87959 1.06075 1.05833 1.19965 0.97445 0.90690 0.83549 1.21204 0.90364 1.00155 1.03846 1.21050 0.93410 0.87857 0.94013 1.98493 1.75292 1.27590 1.95067 1.20878 0.81204 0.95221 1.18415 1.43284 1.02493 1.00921 0.98248 1.94597 1.68152 1.20480 1.53421 1.94611 1.68478 1.20208 1.52401 1.20838 0.92474 0.98167 0.84108 1.31439 1.04570 1.22279 1.18329 1.02136 0.73647 0.73165 0.72921 1.93624 1.61748 1.51737 1.86209 1.93613 1.60403 1.86684 1.53600 1.55600 1.19171 1.90514 1.22088 1.21567 0.96620 1.01100 0.80850 1.19751 0.95081 0.96930 0.93733 1.20913 0.99559 1.46570 0.89725 0.90646 1.24989 0.98230 0.94668 0.95231 1.69896 1.37062 1.47590 0.98822 0.86781 0.85366 0.78843 0.78288 1.20233 1.21178 1.18899 0.86840 0.88444 0.89348 0.81615 0.80044 0.74494 0.92298 0.90333 0.95379 0.96188 0.92433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.09 8.64 36.01 0.31 -0.77 16 2 C 0.09 0.78 5.87 -104.63 -0.61 0.16 16 3 C -0.14 -1.13 9.46 -39.55 -0.37 -1.51 16 4 C 0.07 0.69 6.32 -39.49 -0.25 0.44 16 5 Cl 0.01 0.06 25.94 -51.86 -1.35 -1.29 16 6 C -0.07 -0.90 6.86 -79.91 -0.55 -1.45 16 7 N 0.03 0.41 4.45 33.98 0.15 0.56 16 8 O -0.15 -2.27 18.45 -29.46 -0.54 -2.81 16 9 O -0.14 -1.95 16.02 -29.47 -0.47 -2.42 16 10 C 0.06 0.78 9.06 -39.59 -0.36 0.42 16 11 C -0.68 -7.66 5.82 -39.58 -0.23 -7.89 16 12 S 2.70 33.86 4.93 -107.50 -0.53 33.33 16 13 O -0.94 -14.75 16.53 -57.17 -0.94 -15.70 16 14 O -0.95 -12.48 16.64 -57.17 -0.95 -13.43 16 15 N -1.11 -14.07 4.65 -10.61 -0.05 -14.12 16 16 C 0.12 2.02 6.13 -4.04 -0.02 2.00 16 17 C -0.02 -0.33 4.19 -27.88 -0.12 -0.44 16 18 C -0.53 -13.79 9.66 -34.44 -0.33 -14.13 16 19 H 0.08 2.12 7.99 -52.49 -0.42 1.70 16 20 C 0.07 1.95 5.47 -17.82 -0.10 1.85 16 21 N -0.90 -26.23 13.96 55.43 0.77 -25.46 16 22 Si 0.88 20.06 27.47 -169.99 -4.67 15.39 16 23 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.26 -5.69 6.54 56.52 0.37 -5.32 16 26 H 0.11 0.69 8.04 -51.93 -0.42 0.27 16 27 H 0.10 0.43 8.05 -51.93 -0.42 0.01 16 28 H 0.09 0.65 5.39 -51.93 -0.28 0.37 16 29 H 0.17 0.82 8.06 -52.49 -0.42 0.40 16 30 H 0.18 2.13 6.89 -52.49 -0.36 1.77 16 31 H 0.42 4.40 8.32 -34.47 -0.29 4.11 16 32 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.08 1.35 7.80 -51.93 -0.41 0.95 16 34 H 0.03 0.58 7.20 -51.93 -0.37 0.21 16 35 H 0.02 0.39 7.57 -51.93 -0.39 -0.01 16 36 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 339.04 15.07 5.11 5.11 Total: -1.00 -32.71 339.04 -9.47 -42.19 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -3.37 Total: -0.03 kcal Atomic # 6 Polarization: -18.68 SS G_CDS: -2.64 Total: -21.32 kcal Atomic # 7 Polarization: -39.90 SS G_CDS: 0.88 Total: -39.02 kcal Atomic # 8 Polarization: -31.45 SS G_CDS: -2.91 Total: -34.36 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -4.67 Total: 15.39 kcal Atomic # 16 Polarization: 33.86 SS G_CDS: -0.53 Total: 33.33 kcal Atomic # 17 Polarization: 0.06 SS G_CDS: -1.35 Total: -1.29 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -32.71 -9.47 -42.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133781345.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.880 kcal (2) G-P(sol) polarization free energy of solvation -32.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.475 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds