Wall clock time and date at job start Wed Apr 1 2020 05:36:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38230 * 119.99035 * 2 1 4 4 C 1.38332 * 119.98434 * 180.27561 * 3 2 1 5 5 Cl 1.73603 * 120.01772 * 179.77050 * 4 3 2 6 6 C 1.38381 * 119.97474 * 359.74319 * 4 3 2 7 7 N 1.48012 * 120.01091 * 180.02562 * 6 4 3 8 8 O 1.21799 * 120.00419 * 179.97438 * 7 6 4 9 9 O 1.21813 * 119.99703 * 359.97438 * 7 6 4 10 10 C 1.38193 * 119.98102 * 0.02562 * 6 4 3 11 11 C 1.38221 * 119.99201 * 179.75065 * 2 1 3 12 12 S 1.76199 * 119.98608 * 359.97381 * 11 2 1 13 13 O 1.42098 * 106.39920 * 176.75991 * 12 11 2 14 14 O 1.42101 * 106.40541 * 309.68098 * 12 11 2 15 15 N 1.65603 * 107.21656 * 63.22374 * 12 11 2 16 16 C 1.46494 * 120.00153 * 62.24938 * 15 12 11 17 17 C 1.53007 * 109.47054 * 164.28844 * 16 15 12 18 18 C 1.50694 * 109.46965 * 179.97438 * 17 16 15 19 19 H 1.07999 * 120.00295 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99751 * 179.97438 * 18 17 16 21 21 N 1.31512 * 119.99750 * 179.97438 * 20 18 17 22 22 Si 1.86797 * 119.99882 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.46807 * 90.00627 * 22 20 18 24 24 H 1.48506 * 109.47212 * 210.00177 * 22 20 18 25 25 H 1.48494 * 109.47458 * 330.00204 * 22 20 18 26 26 H 1.09003 * 109.47119 * 264.65755 * 1 2 3 27 27 H 1.09001 * 109.47626 * 24.65783 * 1 2 3 28 28 H 1.08995 * 109.47440 * 144.66132 * 1 2 3 29 29 H 1.07996 * 120.01278 * 0.04408 * 3 2 1 30 30 H 1.07998 * 119.99139 * 179.97438 * 10 6 4 31 31 H 0.97002 * 119.99161 * 242.25265 * 15 12 11 32 32 H 1.09005 * 109.46809 * 284.28266 * 16 15 12 33 33 H 1.09000 * 109.47517 * 44.28685 * 16 15 12 34 34 H 1.08997 * 109.46472 * 299.99930 * 17 16 15 35 35 H 1.09000 * 109.47089 * 59.99579 * 17 16 15 36 36 H 0.97003 * 119.99694 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1972 0.0000 4 6 3.5813 1.1971 -0.0058 5 17 4.4499 2.7002 -0.0118 6 6 4.2725 -0.0017 -0.0062 7 7 5.7526 -0.0028 -0.0117 8 8 6.3609 -1.0580 -0.0116 9 8 6.3624 1.0517 -0.0165 10 6 3.5805 -1.1979 -0.0013 11 6 2.1979 -1.1971 0.0052 12 16 1.3164 -2.7227 0.0125 13 8 2.2940 -3.7513 -0.0602 14 8 0.3624 -2.6299 1.0616 15 7 0.4535 -2.7970 -1.3990 16 6 1.1536 -2.8065 -2.6858 17 6 0.1940 -3.2667 -3.7851 18 6 0.9140 -3.2758 -5.1089 19 1 1.9520 -2.9823 -5.1611 20 6 0.2475 -3.6589 -6.2535 21 7 0.8757 -3.6664 -7.4088 22 14 -1.5477 -4.1673 -6.1630 23 1 -2.4104 -2.9744 -6.3582 24 1 -1.8340 -5.1644 -7.2257 25 1 -1.8259 -4.7673 -4.8335 26 1 -0.3633 -0.0957 1.0232 27 1 -0.3634 0.9339 -0.4287 28 1 -0.3634 -0.8383 -0.5944 29 1 1.6580 2.1325 0.0007 30 1 4.1198 -2.1336 -0.0020 31 1 -0.5154 -2.8342 -1.3736 32 1 1.5107 -1.8018 -2.9125 33 1 2.0009 -3.4901 -2.6335 34 1 -0.1631 -4.2712 -3.5583 35 1 -0.6533 -2.5830 -3.8374 36 1 0.4069 -3.9363 -8.2140 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000133781345.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:36:11 Heat of formation + Delta-G solvation = -72.539465 kcal Electronic energy + Delta-G solvation = -26166.378768 eV Core-core repulsion = 21999.488517 eV Total energy + Delta-G solvation = -4166.890251 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -43.48164 -41.07316 -38.60856 -38.26104 -37.76030 -37.23868 -37.17155 -34.90491 -34.60355 -32.86877 -31.58466 -29.94660 -26.51394 -26.37713 -25.17954 -23.43052 -22.75313 -21.41060 -20.40891 -19.99628 -19.07921 -18.87271 -18.58005 -18.00204 -17.81719 -17.48398 -16.74611 -16.25367 -15.88715 -15.75358 -15.69726 -15.42687 -14.63012 -14.43356 -14.16029 -13.80725 -13.65685 -13.51327 -13.46446 -13.40593 -13.36304 -13.14329 -13.12453 -13.02275 -12.71722 -12.42093 -12.41401 -12.19052 -11.83446 -11.79057 -11.72895 -11.44877 -10.90377 -10.77038 -10.72546 -10.49018 -8.27034 -6.33224 -1.62205 -1.06613 -0.83517 -0.08596 -0.03856 0.40782 1.40402 1.43260 1.44319 1.54346 1.79858 2.39011 2.42554 2.73983 2.99883 3.09435 3.13659 3.30047 3.50144 3.74705 3.98147 4.06016 4.08743 4.14073 4.43179 4.53588 4.59864 4.67692 4.76680 4.83729 4.99723 5.13161 5.36241 5.46118 5.63178 6.01794 6.26462 6.29107 6.75907 7.31842 8.89378 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.011847 B = 0.003418 C = 0.003161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2362.867137 B = 8190.212568 C = 8855.643535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.095 3.905 3 C -0.120 4.120 4 C 0.060 3.940 5 Cl 0.012 6.988 6 C -0.090 4.090 7 N 0.029 4.971 8 O -0.191 6.191 9 O -0.133 6.133 10 C 0.053 3.947 11 C -0.690 4.690 12 S 2.717 3.283 13 O -0.980 6.980 14 O -0.953 6.953 15 N -1.100 6.100 16 C 0.134 3.866 17 C -0.017 4.017 18 C -0.535 4.535 19 H 0.035 0.965 20 C 0.005 3.995 21 N -0.952 5.952 22 Si 0.950 3.050 23 H -0.262 1.262 24 H -0.293 1.293 25 H -0.238 1.238 26 H 0.128 0.872 27 H 0.131 0.869 28 H 0.085 0.915 29 H 0.209 0.791 30 H 0.174 0.826 31 H 0.432 0.568 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.031 0.969 35 H 0.044 0.956 36 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.815 13.193 19.298 23.686 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.093 3.907 3 C -0.139 4.139 4 C 0.031 3.969 5 Cl 0.042 6.958 6 C -0.175 4.175 7 N 0.547 4.453 8 O -0.398 6.398 9 O -0.356 6.356 10 C 0.033 3.967 11 C -0.775 4.775 12 S 2.804 3.196 13 O -0.970 6.970 14 O -0.943 6.943 15 N -0.865 5.865 16 C 0.008 3.992 17 C -0.056 4.056 18 C -0.574 4.574 19 H 0.053 0.947 20 C -0.192 4.192 21 N -0.592 5.592 22 Si 0.773 3.227 23 H -0.187 1.187 24 H -0.219 1.219 25 H -0.162 1.162 26 H 0.145 0.855 27 H 0.149 0.851 28 H 0.103 0.897 29 H 0.226 0.774 30 H 0.191 0.809 31 H 0.271 0.729 32 H 0.088 0.912 33 H 0.081 0.919 34 H 0.050 0.950 35 H 0.062 0.938 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.205 12.625 19.787 23.845 hybrid contribution 0.529 0.268 -0.972 1.138 sum -3.676 12.893 18.815 23.103 Atomic orbital electron populations 1.21779 0.85733 1.07841 1.06880 1.20383 0.98925 0.89943 0.81458 1.21690 0.89257 1.01534 1.01443 1.21295 0.94344 0.87323 0.93929 1.98498 1.75478 1.26916 1.94955 1.20970 0.79758 0.96318 1.20480 1.43543 1.03459 1.00584 0.97751 1.94594 1.69027 1.20734 1.55418 1.94572 1.69255 1.20091 1.51657 1.20830 0.93097 0.98022 0.84756 1.31183 1.03936 1.22487 1.19913 1.01313 0.72943 0.72931 0.72438 1.93586 1.62789 1.54013 1.86571 1.93608 1.60512 1.86901 1.53309 1.55298 1.19864 1.90775 1.20578 1.21189 0.95465 1.01235 0.81285 1.19693 0.95991 0.97871 0.92020 1.21325 0.98323 1.45227 0.92537 0.94673 1.26013 1.03610 0.94889 0.94677 1.70074 1.39433 1.49807 0.99881 0.85661 0.79007 0.78797 0.79186 1.18654 1.21946 1.16155 0.85450 0.85077 0.89674 0.77448 0.80878 0.72948 0.91201 0.91882 0.95040 0.93777 0.92529 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.50 8.64 71.24 0.62 -0.88 16 2 C 0.09 1.40 5.87 -19.87 -0.12 1.28 16 3 C -0.12 -1.54 9.46 22.29 0.21 -1.33 16 4 C 0.06 1.15 6.32 22.33 0.14 1.29 16 5 Cl 0.01 0.21 25.94 -2.72 -0.07 0.14 16 6 C -0.09 -2.22 6.86 36.40 0.25 -1.97 16 7 N 0.03 0.85 4.45 -46.41 -0.21 0.64 16 8 O -0.19 -6.09 18.45 18.89 0.35 -5.75 16 9 O -0.13 -3.77 16.02 18.87 0.30 -3.47 16 10 C 0.05 1.29 9.06 22.26 0.20 1.49 16 11 C -0.69 -14.37 5.82 22.27 0.13 -14.24 16 12 S 2.72 64.26 4.93 -56.49 -0.28 63.98 16 13 O -0.98 -30.74 16.53 -128.00 -2.12 -32.86 16 14 O -0.95 -22.62 16.64 -128.00 -2.13 -24.75 16 15 N -1.10 -25.33 4.65 -187.49 -0.87 -26.20 16 16 C 0.13 4.23 6.13 86.38 0.53 4.76 16 17 C -0.02 -0.66 4.19 29.85 0.12 -0.53 16 18 C -0.54 -28.15 9.66 25.60 0.25 -27.90 16 19 H 0.03 2.06 7.99 -2.91 -0.02 2.04 16 20 C 0.01 0.29 5.47 84.66 0.46 0.75 16 21 N -0.95 -57.26 13.96 21.45 0.30 -56.96 16 22 Si 0.95 40.31 27.47 68.60 1.88 42.19 16 23 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 24 H -0.29 -12.70 7.11 99.48 0.71 -11.99 16 25 H -0.24 -9.03 6.54 99.48 0.65 -8.38 16 26 H 0.13 0.91 8.04 -2.39 -0.02 0.89 16 27 H 0.13 0.35 8.05 -2.39 -0.02 0.33 16 28 H 0.08 0.87 5.39 -2.39 -0.01 0.86 16 29 H 0.21 0.88 8.06 -2.91 -0.02 0.86 16 30 H 0.17 4.37 6.89 -2.91 -0.02 4.35 16 31 H 0.43 7.59 8.32 -96.75 -0.81 6.78 16 32 H 0.07 2.05 8.14 -2.38 -0.02 2.04 16 33 H 0.06 2.19 7.80 -2.39 -0.02 2.17 16 34 H 0.03 1.22 7.20 -2.39 -0.02 1.20 16 35 H 0.04 1.54 7.57 -2.39 -0.02 1.52 16 36 H 0.27 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -73.41 339.04 0.26 -73.16 By element: Atomic # 1 Polarization: 6.86 SS G_CDS: 0.30 Total: 7.16 kcal Atomic # 6 Polarization: -40.07 SS G_CDS: 2.80 Total: -37.28 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -0.78 Total: -82.52 kcal Atomic # 8 Polarization: -63.23 SS G_CDS: -3.59 Total: -66.83 kcal Atomic # 14 Polarization: 40.31 SS G_CDS: 1.88 Total: 42.19 kcal Atomic # 16 Polarization: 64.26 SS G_CDS: -0.28 Total: 63.98 kcal Atomic # 17 Polarization: 0.21 SS G_CDS: -0.07 Total: 0.14 kcal Total: -73.41 0.26 -73.16 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000133781345.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.616 kcal (2) G-P(sol) polarization free energy of solvation -73.412 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.156 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds