Wall clock time and date at job start Wed Apr 1 2020 05:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48498 * 109.47012 * 270.00346 * 3 2 1 5 5 H 1.48501 * 109.47302 * 30.00415 * 3 2 1 6 6 H 1.48501 * 109.46788 * 150.00736 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 N 1.40107 * 119.99521 * 179.72974 * 13 11 10 15 15 C 1.39877 * 119.99501 * 179.97438 * 14 13 11 16 16 C 1.38861 * 120.05142 * 359.72126 * 15 14 13 17 17 C 1.38131 * 119.95504 * 179.74794 * 16 15 14 18 18 C 1.38479 * 120.06431 * 0.52776 * 17 16 15 19 19 F 1.35093 * 119.94745 * 179.77045 * 18 17 16 20 20 C 1.38443 * 120.10576 * 359.74184 * 18 17 16 21 21 C 1.38211 * 120.04040 * 359.97438 * 20 18 17 22 22 Br 1.89097 * 120.03484 * 179.97438 * 21 20 18 23 23 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 24 24 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 25 25 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 26 26 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 27 27 H 0.97001 * 119.99994 * 359.97438 * 14 13 11 28 28 H 1.08000 * 120.02403 * 359.97438 * 16 15 14 29 29 H 1.07993 * 119.96829 * 180.27687 * 17 16 15 30 30 H 1.07999 * 119.98215 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 7 2.3529 -7.6552 0.0090 15 6 3.2421 -8.7349 0.0133 16 6 4.6120 -8.5076 0.0057 17 6 5.4883 -9.5752 0.0152 18 6 5.0021 -10.8718 0.0213 19 9 5.8613 -11.9143 0.0259 20 6 3.6369 -11.1015 0.0233 21 6 2.7561 -10.0364 0.0197 22 35 0.8913 -10.3503 0.0217 23 1 -0.4851 0.8400 0.0004 24 1 3.1252 -3.7317 0.8875 25 1 3.1238 -3.7309 -0.8925 26 1 3.8010 -6.1834 0.0019 27 1 1.3961 -7.8147 0.0103 28 1 4.9920 -7.4967 -0.0040 29 1 6.5537 -9.3987 0.0137 30 1 3.2598 -12.1135 0.0284 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000153695677.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:14 Heat of formation + Delta-G solvation = -12.702874 kcal Electronic energy + Delta-G solvation = -18631.539057 eV Core-core repulsion = 15129.355524 eV Total energy + Delta-G solvation = -3502.183533 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.968 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -49.06621 -40.25422 -39.03580 -35.92442 -33.02428 -32.51993 -32.11625 -30.15181 -29.44106 -27.43156 -25.56689 -23.60784 -22.45616 -21.03948 -18.84653 -18.01667 -17.67529 -17.38739 -16.30660 -15.94504 -15.87419 -15.38710 -14.88298 -14.57561 -14.37813 -14.02838 -13.97536 -13.68575 -13.39853 -13.25210 -12.70152 -12.52832 -11.67760 -11.49118 -11.14368 -11.11947 -11.10597 -10.85733 -10.66342 -9.94179 -9.86175 -9.53511 -9.33816 -9.14971 -8.38155 -7.53764 -6.62400 -6.30688 -4.03094 0.57237 0.84390 1.22062 1.67024 2.73535 3.09238 3.10311 3.17210 3.24352 3.33517 3.92928 4.02186 4.10624 4.16232 4.51796 4.74281 4.82598 5.01854 5.05029 5.26078 5.44501 5.49161 5.53004 5.66005 5.71846 5.93014 6.24802 6.53258 7.10668 7.45356 7.51043 8.25891 8.32762 9.14777 10.76662 Molecular weight = 347.97amu Principal moments of inertia in cm(-1) A = 0.021145 B = 0.002428 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.873537 B =11530.980162 C =12839.682016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.867 5.867 2 C 0.074 3.926 3 Si 0.921 3.079 4 H -0.276 1.276 5 H -0.282 1.282 6 H -0.272 1.272 7 C -0.539 4.539 8 H 0.075 0.925 9 S -0.050 6.050 10 C -0.145 4.145 11 C 0.533 3.467 12 O -0.510 6.510 13 N -0.534 5.534 14 N -0.527 5.527 15 C 0.245 3.755 16 C -0.171 4.171 17 C -0.077 4.077 18 C 0.037 3.963 19 F -0.140 7.140 20 C -0.066 4.066 21 C -0.149 4.149 22 Br -0.031 7.031 23 H 0.270 0.730 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.420 0.580 27 H 0.439 0.561 28 H 0.138 0.862 29 H 0.144 0.856 30 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.959 -23.102 0.032 25.157 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.502 5.502 2 C -0.135 4.135 3 Si 0.747 3.253 4 H -0.202 1.202 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.687 4.687 8 H 0.093 0.907 9 S 0.176 5.824 10 C -0.297 4.297 11 C 0.319 3.681 12 O -0.381 6.381 13 N -0.284 5.284 14 N -0.252 5.252 15 C 0.134 3.866 16 C -0.195 4.195 17 C -0.097 4.097 18 C 0.014 3.986 19 F -0.119 7.119 20 C -0.087 4.087 21 C -0.235 4.235 22 Br 0.053 6.947 23 H 0.080 0.920 24 H 0.115 0.885 25 H 0.115 0.885 26 H 0.262 0.738 27 H 0.285 0.715 28 H 0.156 0.844 29 H 0.161 0.839 30 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 7.121 -23.224 0.039 24.291 hybrid contribution 2.601 1.140 -0.008 2.839 sum 9.721 -22.084 0.030 24.129 Atomic orbital electron populations 1.70008 1.05990 1.27665 1.46503 1.25003 0.95051 0.99117 0.94356 0.86136 0.79395 0.81381 0.78411 1.20208 1.20706 1.19624 1.22854 0.94978 0.91410 1.59451 0.90710 1.85506 1.03928 0.96170 1.96777 1.23486 1.07365 0.93155 1.05680 1.20708 0.86500 0.85216 0.75648 1.90748 1.14991 1.84868 1.47523 1.45207 1.09796 0.94497 1.78918 1.43817 1.07955 0.93310 1.80084 1.17399 0.89934 0.85234 0.94000 1.20300 0.89833 0.99828 1.09539 1.21005 1.01013 0.90364 0.97296 1.17215 0.86780 0.84207 1.10377 1.91495 1.69286 1.56441 1.94659 1.20783 0.90926 0.99085 0.97937 1.20739 0.91545 0.92794 1.18411 1.96770 1.03958 1.95988 1.97944 0.92042 0.88464 0.88467 0.73776 0.71476 0.84436 0.83861 0.83588 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.87 -25.36 13.22 55.49 0.73 -24.63 16 2 C 0.07 2.05 5.49 -17.43 -0.10 1.95 16 3 Si 0.92 20.67 29.55 -169.99 -5.02 15.65 16 4 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 5 H -0.28 -6.26 7.11 56.52 0.40 -5.85 16 6 H -0.27 -5.90 7.11 56.52 0.40 -5.50 16 7 C -0.54 -14.62 9.50 30.94 0.29 -14.33 16 8 H 0.07 1.90 7.80 -52.48 -0.41 1.49 16 9 S -0.05 -1.28 20.57 -107.50 -2.21 -3.49 16 10 C -0.15 -2.63 6.16 36.01 0.22 -2.41 16 11 C 0.53 9.10 7.96 -10.98 -0.09 9.02 16 12 O -0.51 -10.79 15.70 5.55 0.09 -10.70 16 13 N -0.53 -6.68 6.22 31.22 0.19 -6.49 16 14 N -0.53 -6.55 6.40 32.45 0.21 -6.34 16 15 C 0.24 2.54 6.72 -83.70 -0.56 1.98 16 16 C -0.17 -1.42 9.48 -39.39 -0.37 -1.79 16 17 C -0.08 -0.59 10.02 -39.53 -0.40 -0.98 16 18 C 0.04 0.32 7.30 -39.42 -0.29 0.04 16 19 F -0.14 -1.33 17.26 2.25 0.04 -1.29 16 20 C -0.07 -0.58 9.76 -39.52 -0.39 -0.97 16 21 C -0.15 -1.49 6.24 -39.33 -0.25 -1.74 16 22 Br -0.03 -0.32 32.11 -68.01 -2.18 -2.50 16 23 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 24 H 0.10 1.57 8.14 -51.91 -0.42 1.15 16 25 H 0.10 1.57 8.14 -51.92 -0.42 1.15 16 26 H 0.42 3.75 6.61 -182.59 -1.21 2.54 16 27 H 0.44 6.02 6.40 -182.59 -1.17 4.85 16 28 H 0.14 0.85 6.20 -52.49 -0.33 0.53 16 29 H 0.14 0.76 8.06 -52.49 -0.42 0.34 16 30 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 LS Contribution 308.71 15.07 4.65 4.65 Total: -1.00 -32.38 308.71 -9.36 -41.73 By element: Atomic # 1 Polarization: 6.57 SS G_CDS: -3.94 Total: 2.64 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -1.92 Total: -9.23 kcal Atomic # 7 Polarization: -38.59 SS G_CDS: 1.14 Total: -37.46 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 9 Polarization: -1.33 SS G_CDS: 0.04 Total: -1.29 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 16 Polarization: -1.28 SS G_CDS: -2.21 Total: -3.49 kcal Atomic # 35 Polarization: -0.32 SS G_CDS: -2.18 Total: -2.50 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -32.38 -9.36 -41.73 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153695677.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.032 kcal (2) G-P(sol) polarization free energy of solvation -32.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.344 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.359 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.735 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds