Wall clock time and date at job start Wed Apr 1 2020 05:10:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31633 * 1 3 3 Si 1.86796 * 119.99741 * 2 1 4 4 H 1.48498 * 109.47012 * 270.00346 * 3 2 1 5 5 H 1.48501 * 109.47302 * 30.00415 * 3 2 1 6 6 H 1.48501 * 109.46788 * 150.00736 * 3 2 1 7 7 C 1.38799 * 119.99674 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99356 * 179.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 359.97438 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 N 1.40107 * 119.99521 * 179.72974 * 13 11 10 15 15 C 1.39877 * 119.99501 * 179.97438 * 14 13 11 16 16 C 1.38861 * 120.05142 * 359.72126 * 15 14 13 17 17 C 1.38131 * 119.95504 * 179.74794 * 16 15 14 18 18 C 1.38479 * 120.06431 * 0.52776 * 17 16 15 19 19 F 1.35093 * 119.94745 * 179.77045 * 18 17 16 20 20 C 1.38443 * 120.10576 * 359.74184 * 18 17 16 21 21 C 1.38211 * 120.04040 * 359.97438 * 20 18 17 22 22 Br 1.89097 * 120.03484 * 179.97438 * 21 20 18 23 23 H 0.97003 * 120.00297 * 359.97438 * 1 2 3 24 24 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 25 25 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 26 26 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 27 27 H 0.97001 * 119.99994 * 359.97438 * 14 13 11 28 28 H 1.08000 * 120.02403 * 359.97438 * 16 15 14 29 29 H 1.07993 * 119.96829 * 180.27687 * 17 16 15 30 30 H 1.07999 * 119.98215 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0465 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5479 1.4401 0.6999 7 6 2.0103 -1.2021 -0.0005 8 1 3.0903 -1.2020 -0.0010 9 16 1.1294 -2.7280 -0.0005 10 6 2.5159 -3.8914 -0.0021 11 6 1.9874 -5.3028 -0.0017 12 8 0.7911 -5.5023 0.0000 13 7 2.8442 -6.3431 0.0029 14 7 2.3529 -7.6552 0.0090 15 6 3.2421 -8.7349 0.0133 16 6 4.6120 -8.5076 0.0057 17 6 5.4883 -9.5752 0.0152 18 6 5.0021 -10.8718 0.0213 19 9 5.8613 -11.9143 0.0259 20 6 3.6369 -11.1015 0.0233 21 6 2.7561 -10.0364 0.0197 22 35 0.8913 -10.3503 0.0217 23 1 -0.4851 0.8400 0.0004 24 1 3.1252 -3.7317 0.8875 25 1 3.1238 -3.7309 -0.8925 26 1 3.8010 -6.1834 0.0019 27 1 1.3961 -7.8147 0.0103 28 1 4.9920 -7.4967 -0.0040 29 1 6.5537 -9.3987 0.0137 30 1 3.2598 -12.1135 0.0284 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000153695677.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:10:14 Heat of formation + Delta-G solvation = -33.545792 kcal Electronic energy + Delta-G solvation = -18632.442874 eV Core-core repulsion = 15129.355524 eV Total energy + Delta-G solvation = -3503.087350 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.968 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -49.79235 -41.25590 -40.08541 -36.97562 -34.57170 -33.86044 -33.10787 -31.03108 -30.50061 -28.41774 -27.60067 -24.40176 -23.22431 -22.19669 -20.13699 -19.33396 -18.78500 -18.32748 -17.36977 -16.86884 -16.81171 -16.75105 -16.52931 -16.10167 -15.38999 -15.00735 -14.88812 -14.65140 -14.52795 -14.26792 -13.95029 -13.78720 -13.15637 -12.89203 -12.75700 -12.62096 -12.15660 -11.86768 -11.75073 -11.44305 -11.28671 -11.12993 -10.45465 -10.27543 -10.05070 -8.67261 -8.42773 -8.33862 -6.11756 -0.10747 0.10748 0.45500 0.60400 1.36088 1.42912 1.44801 1.53561 1.66223 2.27486 2.37914 2.89494 3.01278 3.27226 3.33053 3.48697 3.77487 3.92805 4.12456 4.26492 4.27995 4.49324 4.57307 4.80002 4.89518 5.05353 5.37259 5.44502 5.70359 6.07216 6.21364 6.43369 7.08287 7.15292 8.75123 Molecular weight = 347.97amu Principal moments of inertia in cm(-1) A = 0.021145 B = 0.002428 C = 0.002180 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1323.873537 B =11530.980162 C =12839.682016 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.013 3.987 3 Si 0.998 3.002 4 H -0.269 1.269 5 H -0.281 1.281 6 H -0.256 1.256 7 C -0.544 4.544 8 H 0.088 0.912 9 S -0.144 6.144 10 C -0.120 4.120 11 C 0.535 3.465 12 O -0.559 6.559 13 N -0.507 5.507 14 N -0.540 5.540 15 C 0.227 3.773 16 C -0.165 4.165 17 C -0.069 4.069 18 C 0.034 3.966 19 F -0.143 7.143 20 C -0.070 4.070 21 C -0.155 4.155 22 Br -0.040 7.040 23 H 0.270 0.730 24 H 0.123 0.877 25 H 0.123 0.877 26 H 0.440 0.560 27 H 0.431 0.569 28 H 0.162 0.838 29 H 0.173 0.827 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.245 -23.382 0.037 26.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.194 1.194 5 H -0.207 1.207 6 H -0.179 1.179 7 C -0.692 4.692 8 H 0.106 0.894 9 S 0.082 5.918 10 C -0.272 4.272 11 C 0.321 3.679 12 O -0.435 6.435 13 N -0.257 5.257 14 N -0.266 5.266 15 C 0.120 3.880 16 C -0.189 4.189 17 C -0.089 4.089 18 C 0.012 3.988 19 F -0.122 7.122 20 C -0.091 4.091 21 C -0.241 4.241 22 Br 0.044 6.956 23 H 0.079 0.921 24 H 0.141 0.859 25 H 0.141 0.859 26 H 0.285 0.715 27 H 0.276 0.724 28 H 0.180 0.820 29 H 0.190 0.810 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 10.501 -23.565 0.043 25.799 hybrid contribution 1.706 0.979 -0.011 1.967 sum 12.207 -22.586 0.032 25.674 Atomic orbital electron populations 1.70180 1.08012 1.28603 1.48106 1.26115 0.95915 1.03339 0.93815 0.84960 0.78284 0.76075 0.78717 1.19441 1.20686 1.17926 1.23223 0.95566 0.91721 1.58681 0.89351 1.85704 1.09862 0.99098 1.97104 1.23261 1.04095 0.91711 1.08128 1.20378 0.86055 0.85738 0.75693 1.90738 1.17083 1.85454 1.50228 1.44673 1.10074 0.94294 1.76682 1.43868 1.07997 0.93067 1.81651 1.17637 0.90584 0.84664 0.95143 1.20612 0.88806 1.01299 1.08144 1.21310 1.02432 0.89424 0.95691 1.17416 0.86691 0.84708 1.10006 1.91494 1.69320 1.56751 1.94653 1.20920 0.91035 0.99421 0.97690 1.20830 0.91316 0.93118 1.18801 1.96767 1.04854 1.95956 1.97984 0.92056 0.85885 0.85868 0.71452 0.72437 0.82039 0.80990 0.82444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -54.58 13.22 21.65 0.29 -54.30 16 2 C 0.01 0.71 5.49 84.86 0.47 1.17 16 3 Si 1.00 41.95 29.55 68.60 2.03 43.97 16 4 H -0.27 -10.91 7.11 99.48 0.71 -10.20 16 5 H -0.28 -11.69 7.11 99.48 0.71 -10.99 16 6 H -0.26 -9.96 7.11 99.48 0.71 -9.26 16 7 C -0.54 -29.36 9.50 67.95 0.65 -28.72 16 8 H 0.09 4.34 7.80 -2.91 -0.02 4.32 16 9 S -0.14 -7.53 20.57 -56.49 -1.16 -8.70 16 10 C -0.12 -4.14 6.16 71.24 0.44 -3.71 16 11 C 0.54 17.79 7.96 87.66 0.70 18.49 16 12 O -0.56 -24.12 15.70 -3.04 -0.05 -24.17 16 13 N -0.51 -11.63 6.22 -173.53 -1.08 -12.71 16 14 N -0.54 -12.75 6.40 -51.26 -0.33 -13.08 16 15 C 0.23 4.30 6.72 38.17 0.26 4.55 16 16 C -0.16 -2.19 9.48 22.39 0.21 -1.98 16 17 C -0.07 -0.81 10.02 22.30 0.22 -0.59 16 18 C 0.03 0.51 7.30 22.38 0.16 0.68 16 19 F -0.14 -2.39 17.26 44.97 0.78 -1.61 16 20 C -0.07 -1.11 9.76 22.31 0.22 -0.89 16 21 C -0.16 -2.91 6.24 22.43 0.14 -2.77 16 22 Br -0.04 -0.82 32.11 -20.37 -0.65 -1.47 16 23 H 0.27 15.08 8.31 -92.71 -0.77 14.31 16 24 H 0.12 3.65 8.14 -2.39 -0.02 3.63 16 25 H 0.12 3.65 8.14 -2.40 -0.02 3.63 16 26 H 0.44 6.29 6.61 -213.32 -1.41 4.88 16 27 H 0.43 11.79 6.40 -213.32 -1.36 10.43 16 28 H 0.16 1.28 6.20 -2.91 -0.02 1.26 16 29 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 30 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 Total: -1.00 -72.49 308.71 1.73 -70.76 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -1.55 Total: 15.05 kcal Atomic # 6 Polarization: -17.22 SS G_CDS: 3.46 Total: -13.76 kcal Atomic # 7 Polarization: -78.96 SS G_CDS: -1.12 Total: -80.08 kcal Atomic # 8 Polarization: -24.12 SS G_CDS: -0.05 Total: -24.17 kcal Atomic # 9 Polarization: -2.39 SS G_CDS: 0.78 Total: -1.61 kcal Atomic # 14 Polarization: 41.95 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: -7.53 SS G_CDS: -1.16 Total: -8.70 kcal Atomic # 35 Polarization: -0.82 SS G_CDS: -0.65 Total: -1.47 kcal Total: -72.49 1.73 -70.76 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000153695677.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.215 kcal (2) G-P(sol) polarization free energy of solvation -72.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.275 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds