Wall clock time and date at job start Wed Apr 1 2020 05:09:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31628 * 1 3 3 Si 1.86804 * 120.00169 * 2 1 4 4 H 1.48497 * 109.47141 * 269.99831 * 3 2 1 5 5 H 1.48505 * 109.47177 * 29.99625 * 3 2 1 6 6 H 1.48496 * 109.47259 * 149.99598 * 3 2 1 7 7 C 1.38799 * 120.00336 * 179.97438 * 2 1 3 8 8 H 1.08005 * 119.99356 * 359.97438 * 7 2 1 9 9 S 1.76196 * 120.00626 * 180.02562 * 7 2 1 10 10 C 1.80997 * 100.00314 * 179.97438 * 9 7 2 11 11 C 1.50700 * 109.47151 * 179.97438 * 10 9 7 12 12 O 1.21283 * 119.99803 * 359.97438 * 11 10 9 13 13 N 1.34777 * 119.99675 * 180.27780 * 11 10 9 14 14 N 1.40107 * 119.99521 * 179.72974 * 13 11 10 15 15 C 1.39890 * 119.99344 * 179.97438 * 14 13 11 16 16 C 1.38812 * 120.07804 * 359.72582 * 15 14 13 17 17 C 1.38156 * 119.96440 * 179.70019 * 16 15 14 18 18 C 1.38345 * 120.09967 * 0.57120 * 17 16 15 19 19 Br 1.89097 * 119.93071 * 179.74623 * 18 17 16 20 20 C 1.38371 * 120.13930 * 359.72215 * 18 17 16 21 21 C 1.38271 * 120.03937 * 359.97438 * 20 18 17 22 22 F 1.35101 * 120.05077 * 180.02562 * 21 20 18 23 23 H 0.97003 * 119.99714 * 0.02562 * 1 2 3 24 24 H 1.09009 * 109.46810 * 59.99569 * 10 9 7 25 25 H 1.08998 * 109.46824 * 300.00078 * 10 9 7 26 26 H 0.97000 * 119.99894 * 359.71837 * 13 11 10 27 27 H 0.97001 * 119.99994 * 359.97438 * 14 13 11 28 28 H 1.08007 * 120.01531 * 359.97438 * 16 15 14 29 29 H 1.08003 * 119.95269 * 180.27240 * 17 16 15 30 30 H 1.08005 * 119.97843 * 180.02562 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4979 2.0464 -1.4000 5 1 1.4478 2.6528 0.7000 6 1 3.5478 1.4402 0.7001 7 6 2.0103 -1.2020 0.0005 8 1 1.4703 -2.1373 0.0014 9 16 3.7723 -1.2021 0.0012 10 6 4.0866 -2.9846 0.0025 11 6 5.5731 -3.2325 0.0026 12 8 6.3440 -2.2963 0.0014 13 7 6.0456 -4.4947 -0.0021 14 7 7.4276 -4.7252 -0.0077 15 6 7.9180 -6.0353 -0.0121 16 6 7.0370 -7.1080 -0.0051 17 6 7.5239 -8.4009 -0.0157 18 6 8.8885 -8.6284 -0.0214 19 35 9.5497 -10.4000 -0.0286 20 6 9.7706 -7.5623 -0.0222 21 6 9.2896 -6.2659 -0.0179 22 9 10.1506 -5.2248 -0.0193 23 1 -0.4850 0.8401 -0.0004 24 1 3.6439 -3.4322 -0.8874 25 1 3.6433 -3.4309 0.8926 26 1 5.4290 -5.2435 -0.0014 27 1 8.0442 -3.9764 -0.0086 28 1 5.9715 -6.9320 0.0041 29 1 6.8382 -9.2354 -0.0148 30 1 10.8354 -7.7428 -0.0270 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156627293.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:09:41 Heat of formation + Delta-G solvation = -33.684055 kcal Electronic energy + Delta-G solvation = -18673.568003 eV Core-core repulsion = 15170.474658 eV Total energy + Delta-G solvation = -3503.093345 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.968 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.97540 -41.21954 -40.07248 -37.22487 -34.66825 -33.91018 -32.23089 -31.79624 -30.53306 -28.28654 -27.79682 -24.47224 -23.18420 -22.28556 -20.24628 -19.34466 -18.92160 -18.10662 -17.50210 -17.12199 -16.96052 -16.79398 -16.62675 -16.02325 -15.69106 -15.29815 -14.92723 -14.75199 -14.56789 -14.40685 -13.87968 -13.35108 -13.22720 -13.05420 -13.01662 -12.74788 -12.44267 -11.88713 -11.63930 -11.36427 -11.25869 -11.17035 -10.54750 -10.37772 -10.05148 -9.01241 -8.51187 -8.46814 -6.22236 -0.02380 0.01291 0.45608 0.64371 1.11801 1.31698 1.35702 1.48295 1.64504 2.24131 2.37183 2.61108 2.87460 2.92782 3.04559 3.53862 3.64275 3.97120 4.07038 4.19406 4.31239 4.43873 4.61711 4.82813 4.87869 5.07017 5.28348 5.61611 5.71514 6.00961 6.13396 6.39474 6.94235 7.07861 8.60772 Molecular weight = 347.97amu Principal moments of inertia in cm(-1) A = 0.035648 B = 0.001933 C = 0.001836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 785.279118 B =14480.422682 C =15250.527776 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.046 3.954 3 Si 0.911 3.089 4 H -0.264 1.264 5 H -0.261 1.261 6 H -0.236 1.236 7 C -0.527 4.527 8 H 0.069 0.931 9 S -0.170 6.170 10 C -0.101 4.101 11 C 0.537 3.463 12 O -0.558 6.558 13 N -0.504 5.504 14 N -0.539 5.539 15 C 0.198 3.802 16 C -0.170 4.170 17 C -0.034 4.034 18 C -0.132 4.132 19 Br -0.039 7.039 20 C -0.070 4.070 21 C 0.015 3.985 22 F -0.145 7.145 23 H 0.277 0.723 24 H 0.127 0.873 25 H 0.127 0.873 26 H 0.440 0.560 27 H 0.433 0.567 28 H 0.161 0.839 29 H 0.166 0.834 30 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.605 -25.157 0.059 31.894 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C -0.159 4.159 3 Si 0.733 3.267 4 H -0.188 1.188 5 H -0.186 1.186 6 H -0.160 1.160 7 C -0.674 4.674 8 H 0.087 0.913 9 S 0.056 5.944 10 C -0.253 4.253 11 C 0.323 3.677 12 O -0.434 6.434 13 N -0.254 5.254 14 N -0.264 5.264 15 C 0.092 3.908 16 C -0.194 4.194 17 C -0.055 4.055 18 C -0.213 4.213 19 Br 0.046 6.954 20 C -0.091 4.091 21 C -0.010 4.010 22 F -0.124 7.124 23 H 0.086 0.914 24 H 0.145 0.855 25 H 0.145 0.855 26 H 0.286 0.714 27 H 0.276 0.724 28 H 0.178 0.822 29 H 0.184 0.816 30 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 20.764 -24.095 0.060 31.807 hybrid contribution -0.992 0.465 -0.041 1.096 sum 19.772 -23.630 0.019 30.810 Atomic orbital electron populations 1.70007 1.07235 1.28979 1.49083 1.25519 0.95229 1.02155 0.93044 0.85916 0.80723 0.79916 0.80124 1.18834 1.18588 1.16023 1.22447 0.90012 0.96844 1.58143 0.91305 1.84845 1.06676 1.05266 1.97640 1.23137 0.92943 1.00415 1.08831 1.20247 0.90334 0.81307 0.75835 1.90739 1.59046 1.43217 1.50394 1.44603 0.95772 1.08589 1.76432 1.43370 0.95207 1.05664 1.82117 1.18066 0.91420 0.84242 0.97034 1.20665 1.00105 0.90155 1.08474 1.21202 0.93436 0.97383 0.93444 1.21390 0.95377 0.91151 1.13423 1.96745 1.87620 1.13114 1.97919 1.20954 1.01656 0.88725 0.97743 1.16980 0.84604 0.84849 1.14609 1.91479 1.69315 1.56683 1.94939 0.91397 0.85482 0.85451 0.71367 0.72389 0.82198 0.81638 0.82423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.07 13.97 21.65 0.30 -53.77 16 2 C 0.05 2.62 5.50 84.86 0.47 3.08 16 3 Si 0.91 43.59 27.74 68.60 1.90 45.49 16 4 H -0.26 -12.37 7.11 99.48 0.71 -11.66 16 5 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 6 H -0.24 -11.25 6.74 99.48 0.67 -10.58 16 7 C -0.53 -29.02 10.04 67.95 0.68 -28.34 16 8 H 0.07 3.95 8.03 -2.91 -0.02 3.93 16 9 S -0.17 -8.04 18.55 -56.49 -1.05 -9.08 16 10 C -0.10 -3.30 6.16 71.24 0.44 -2.86 16 11 C 0.54 16.36 7.96 87.66 0.70 17.06 16 12 O -0.56 -21.99 15.70 -3.04 -0.05 -22.03 16 13 N -0.50 -10.62 6.22 -173.53 -1.08 -11.70 16 14 N -0.54 -11.76 6.46 -51.19 -0.33 -12.09 16 15 C 0.20 3.54 6.73 38.19 0.26 3.79 16 16 C -0.17 -2.13 9.48 22.39 0.21 -1.91 16 17 C -0.03 -0.38 9.78 22.28 0.22 -0.16 16 18 C -0.13 -1.76 6.22 22.33 0.14 -1.62 16 19 Br -0.04 -0.48 33.69 -20.37 -0.69 -1.17 16 20 C -0.07 -1.05 9.76 22.31 0.22 -0.83 16 21 C 0.02 0.28 7.31 22.48 0.16 0.45 16 22 F -0.15 -3.17 16.64 44.97 0.75 -2.42 16 23 H 0.28 15.17 8.31 -92.71 -0.77 14.40 16 24 H 0.13 3.61 8.14 -2.39 -0.02 3.59 16 25 H 0.13 3.62 8.14 -2.40 -0.02 3.60 16 26 H 0.44 5.78 6.61 -213.32 -1.41 4.37 16 27 H 0.43 10.89 7.49 -213.32 -1.60 9.29 16 28 H 0.16 1.20 6.20 -2.91 -0.02 1.18 16 29 H 0.17 1.03 8.06 -2.91 -0.02 1.01 16 30 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -69.64 307.90 1.43 -68.21 By element: Atomic # 1 Polarization: 11.71 SS G_CDS: -1.82 Total: 9.89 kcal Atomic # 6 Polarization: -14.83 SS G_CDS: 3.49 Total: -11.33 kcal Atomic # 7 Polarization: -76.45 SS G_CDS: -1.11 Total: -77.55 kcal Atomic # 8 Polarization: -21.99 SS G_CDS: -0.05 Total: -22.03 kcal Atomic # 9 Polarization: -3.17 SS G_CDS: 0.75 Total: -2.42 kcal Atomic # 14 Polarization: 43.59 SS G_CDS: 1.90 Total: 45.49 kcal Atomic # 16 Polarization: -8.04 SS G_CDS: -1.05 Total: -9.08 kcal Atomic # 35 Polarization: -0.48 SS G_CDS: -0.69 Total: -1.17 kcal Total: -69.64 1.43 -68.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156627293.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.525 kcal (2) G-P(sol) polarization free energy of solvation -69.643 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.209 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.684 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds