Wall clock time and date at job start Wed Apr 1 2020 05:20:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13600 * 1 3 3 C 1.47200 * 179.97438 * 2 1 4 4 N 1.46497 * 109.47667 * 308.00523 * 3 2 1 5 5 C 1.36937 * 120.00145 * 273.33934 * 4 3 2 6 6 H 1.07999 * 120.00235 * 187.23787 * 5 4 3 7 7 C 1.38810 * 120.00049 * 7.23667 * 5 4 3 8 8 N 1.31622 * 120.00048 * 25.59267 * 7 5 4 9 9 Si 1.86802 * 120.00011 * 205.59781 * 7 5 4 10 10 H 1.48496 * 109.47472 * 59.99761 * 9 7 5 11 11 H 1.48505 * 109.47038 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46977 * 299.99506 * 9 7 5 13 13 S 1.65595 * 119.99963 * 93.33190 * 4 3 2 14 14 O 1.42103 * 106.40174 * 156.46380 * 13 4 3 15 15 O 1.42106 * 106.40372 * 23.54844 * 13 4 3 16 16 C 1.76195 * 107.22135 * 270.00194 * 13 4 3 17 17 C 1.38261 * 119.99613 * 90.00279 * 16 13 4 18 18 C 1.38224 * 119.99737 * 180.25896 * 17 16 13 19 19 C 1.38258 * 119.99730 * 359.50643 * 18 17 16 20 20 C 1.38211 * 120.00007 * 0.44506 * 19 18 17 21 21 S 1.76205 * 119.99560 * 179.83300 * 20 19 18 22 22 O 1.42097 * 106.39924 * 269.97748 * 21 20 19 23 23 O 1.42098 * 106.40289 * 42.90368 * 21 20 19 24 24 F 1.61007 * 107.21351 * 156.43985 * 21 20 19 25 25 C 1.38208 * 120.00368 * 269.97931 * 16 13 4 26 26 H 1.09009 * 109.46757 * 188.00379 * 3 2 1 27 27 H 1.09002 * 109.47170 * 68.00715 * 3 2 1 28 28 H 0.97000 * 119.99773 * 180.02562 * 8 7 5 29 29 H 1.07995 * 120.00213 * 359.97438 * 17 16 13 30 30 H 1.07995 * 119.99604 * 179.72421 * 18 17 16 31 31 H 1.07997 * 119.99482 * 180.28151 * 19 18 17 32 32 H 1.08001 * 119.99804 * 359.97438 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.8495 1.0883 5 6 3.2598 -0.3283 2.3440 6 1 3.7287 -0.9188 3.1172 7 6 2.8223 0.9592 2.6233 8 7 1.8465 1.4902 1.9174 9 14 3.6185 1.9380 4.0007 10 1 5.0664 2.1049 3.7165 11 1 2.9758 3.2735 4.0944 12 1 3.4465 1.2141 5.2858 13 16 3.4522 -2.4410 0.7999 14 8 4.3773 -2.8340 1.8045 15 8 3.7242 -2.5458 -0.5909 16 6 1.9803 -3.3650 1.0902 17 6 1.0900 -3.5895 0.0565 18 6 -0.0673 -4.3099 0.2855 19 6 -0.3295 -4.8145 1.5457 20 6 0.5611 -4.5909 2.5787 21 16 0.2247 -5.2304 4.1858 22 8 -0.5106 -4.2261 4.8713 23 8 -0.2561 -6.5543 3.9983 24 9 1.6353 -5.3630 4.9507 25 6 1.7161 -3.8658 2.3510 26 1 2.9708 1.0186 0.1431 27 1 2.9715 -0.3840 -0.9529 28 1 1.5411 2.3900 2.1123 29 1 1.2964 -3.1982 -0.9286 30 1 -0.7649 -4.4814 -0.5209 31 1 -1.2315 -5.3812 1.7234 32 1 2.4120 -3.6911 3.1582 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000166124741.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:20:55 Heat of formation + Delta-G solvation = -145.925333 kcal Electronic energy + Delta-G solvation = -26653.536996 eV Core-core repulsion = 22362.047896 eV Total energy + Delta-G solvation = -4291.489100 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.013 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -49.39427 -40.29676 -38.87107 -38.50632 -37.87953 -37.61798 -36.46350 -36.29308 -33.56053 -32.71151 -32.43455 -29.27049 -25.93534 -24.81811 -24.45827 -21.71874 -20.57876 -20.23345 -19.56282 -18.93174 -18.55252 -18.01629 -17.96672 -17.66735 -17.00177 -16.82769 -16.37092 -15.97051 -15.82765 -15.53206 -15.29279 -15.03136 -14.80672 -14.39696 -14.14879 -14.11610 -13.83985 -13.77423 -13.67073 -13.61403 -13.39440 -13.27173 -13.23604 -12.85690 -12.74609 -12.57926 -12.27797 -12.23108 -12.07972 -11.87921 -11.70304 -11.34128 -10.83030 -10.44918 -10.25443 -8.55700 -5.93274 -1.39085 -0.58650 -0.34018 -0.11910 1.53803 1.59475 1.60513 1.68455 1.84920 1.88031 2.12312 2.28548 2.36755 2.71659 2.81237 3.06198 3.14235 3.43990 3.59007 3.60295 3.74687 3.84067 4.08589 4.34920 4.43869 4.55128 4.61702 4.81890 4.88645 4.96580 5.16851 5.37866 5.55081 6.23752 6.62622 7.04762 7.07496 8.42475 Molecular weight = 348.01amu Principal moments of inertia in cm(-1) A = 0.011531 B = 0.005168 C = 0.004515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2427.645588 B = 5416.896708 C = 6200.153862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.503 5.503 2 C 0.250 3.750 3 C 0.220 3.780 4 N -0.798 5.798 5 C -0.268 4.268 6 H 0.128 0.872 7 C 0.009 3.991 8 N -0.849 5.849 9 Si 0.991 3.009 10 H -0.256 1.256 11 H -0.280 1.280 12 H -0.269 1.269 13 S 2.538 3.462 14 O -0.995 6.995 15 O -0.997 6.997 16 C -0.697 4.697 17 C 0.012 3.988 18 C -0.152 4.152 19 C 0.015 3.985 20 C -0.712 4.712 21 S 2.710 3.290 22 O -0.945 6.945 23 O -0.934 6.934 24 F -0.462 7.462 25 C 0.033 3.967 26 H 0.141 0.859 27 H 0.131 0.869 28 H 0.286 0.714 29 H 0.149 0.851 30 H 0.175 0.825 31 H 0.178 0.822 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.852 -6.075 -0.301 6.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.184 5.184 2 C -0.068 4.068 3 C 0.091 3.909 4 N -0.621 5.621 5 C -0.415 4.415 6 H 0.145 0.855 7 C -0.202 4.202 8 N -0.488 5.488 9 Si 0.813 3.187 10 H -0.180 1.180 11 H -0.205 1.205 12 H -0.194 1.194 13 S 2.638 3.362 14 O -0.985 6.985 15 O -0.987 6.987 16 C -0.777 4.777 17 C -0.007 4.007 18 C -0.171 4.171 19 C -0.004 4.004 20 C -0.799 4.799 21 S 2.798 3.202 22 O -0.944 6.944 23 O -0.932 6.932 24 F -0.461 7.461 25 C 0.012 3.988 26 H 0.159 0.841 27 H 0.149 0.851 28 H 0.097 0.903 29 H 0.166 0.834 30 H 0.193 0.807 31 H 0.196 0.804 32 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -1.981 -6.812 -0.099 7.095 hybrid contribution -0.096 0.703 0.200 0.737 sum -2.077 -6.109 0.101 6.453 Atomic orbital electron populations 1.80885 1.14549 1.11092 1.11839 1.29875 0.95959 0.90917 0.90065 1.19326 0.80110 1.00282 0.91213 1.55457 1.71741 1.19772 1.15127 1.20416 1.31732 0.98148 0.91249 0.85502 1.26245 0.94615 0.98729 1.00580 1.69975 1.21236 1.17472 1.40095 0.84990 0.79293 0.76927 0.77511 1.18023 1.20465 1.19399 1.11281 0.78162 0.73631 0.73140 1.93350 1.62763 1.82746 1.59669 1.93350 1.85805 1.86535 1.32967 1.32515 1.27542 1.17231 1.00404 1.21520 0.91388 0.89717 0.98089 1.21833 0.97947 0.98821 0.98463 1.21391 0.96441 0.91348 0.91257 1.30685 1.06711 1.19311 1.23189 1.02863 0.69862 0.74307 0.73157 1.93762 1.67451 1.60529 1.72645 1.93725 1.76815 1.36703 1.85999 1.93644 1.69440 1.96463 1.86585 1.20819 0.93166 0.87880 0.96886 0.84146 0.85123 0.90303 0.83377 0.80731 0.80450 0.83153 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.05 18.54 20.01 0.37 -21.68 16 2 C 0.25 10.13 13.29 89.44 1.19 11.32 16 3 C 0.22 7.95 5.45 84.57 0.46 8.41 16 4 N -0.80 -32.13 2.88 -352.51 -1.02 -33.14 16 5 C -0.27 -11.32 9.47 84.03 0.80 -10.52 16 6 H 0.13 5.31 7.22 -2.91 -0.02 5.29 16 7 C 0.01 0.38 4.91 84.86 0.42 0.80 16 8 N -0.85 -36.12 8.99 21.65 0.19 -35.93 16 9 Si 0.99 33.44 29.62 68.60 2.03 35.47 16 10 H -0.26 -8.31 7.11 99.48 0.71 -7.61 16 11 H -0.28 -9.39 7.11 99.48 0.71 -8.69 16 12 H -0.27 -9.21 7.11 99.48 0.71 -8.50 16 13 S 2.54 102.08 5.65 -56.49 -0.32 101.77 16 14 O -1.00 -44.20 16.06 -128.00 -2.06 -46.26 16 15 O -1.00 -40.67 15.85 -128.00 -2.03 -42.70 16 16 C -0.70 -25.91 5.97 22.27 0.13 -25.78 16 17 C 0.01 0.39 9.52 22.27 0.21 0.60 16 18 C -0.15 -4.04 10.05 22.27 0.22 -3.81 16 19 C 0.01 0.39 9.60 22.27 0.21 0.60 16 20 C -0.71 -21.07 5.86 22.27 0.13 -20.94 16 21 S 2.71 69.66 6.69 -56.49 -0.38 69.28 16 22 O -0.95 -29.64 18.04 -128.00 -2.31 -31.95 16 23 O -0.93 -24.84 17.87 -128.00 -2.29 -27.12 16 24 F -0.46 -11.53 17.42 44.97 0.78 -10.75 16 25 C 0.03 1.14 9.09 22.27 0.20 1.34 16 26 H 0.14 4.92 6.47 -2.38 -0.02 4.90 16 27 H 0.13 3.97 6.95 -2.39 -0.02 3.96 16 28 H 0.29 11.73 8.31 -92.71 -0.77 10.96 16 29 H 0.15 4.45 7.62 -2.91 -0.02 4.43 16 30 H 0.18 3.24 8.06 -2.91 -0.02 3.21 16 31 H 0.18 3.11 8.06 -2.91 -0.02 3.09 16 32 H 0.15 4.93 7.32 -2.91 -0.02 4.91 16 Total: -1.00 -63.22 322.15 -1.83 -65.05 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 1.21 Total: 15.94 kcal Atomic # 6 Polarization: -41.96 SS G_CDS: 3.98 Total: -37.98 kcal Atomic # 7 Polarization: -90.30 SS G_CDS: -0.45 Total: -90.75 kcal Atomic # 8 Polarization: -139.34 SS G_CDS: -8.68 Total: -148.02 kcal Atomic # 9 Polarization: -11.53 SS G_CDS: 0.78 Total: -10.75 kcal Atomic # 14 Polarization: 33.44 SS G_CDS: 2.03 Total: 35.47 kcal Atomic # 16 Polarization: 171.74 SS G_CDS: -0.70 Total: 171.04 kcal Total: -63.22 -1.83 -65.05 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000166124741.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.880 kcal (2) G-P(sol) polarization free energy of solvation -63.216 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.096 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.045 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.925 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds