Wall clock time and date at job start Wed Apr 1 2020 05:33:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99903 * 2 1 4 4 H 1.48507 * 109.46908 * 240.00131 * 3 2 1 5 5 H 1.48498 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47328 * 120.00090 * 3 2 1 7 7 C 1.37884 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00050 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99898 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47223 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47427 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.47581 * 179.97438 * 11 10 9 13 13 S 1.65591 * 120.00550 * 165.90194 * 12 11 10 14 14 O 1.42103 * 106.40168 * 310.21732 * 13 12 11 15 15 O 1.42096 * 106.40956 * 177.29358 * 13 12 11 16 16 C 1.76210 * 107.21811 * 63.75088 * 13 12 11 17 17 C 1.38371 * 120.00063 * 81.82548 * 16 13 12 18 18 Cl 1.73593 * 120.01888 * 359.96004 * 17 16 13 19 19 C 1.38335 * 119.96842 * 180.23013 * 17 16 13 20 20 C 1.38244 * 119.98601 * 359.47746 * 19 17 16 21 21 C 1.38216 * 120.01057 * 0.52467 * 20 19 17 22 22 C 1.38192 * 120.00710 * 261.80920 * 16 13 12 23 23 N 1.48020 * 119.99140 * 0.02562 * 22 16 13 24 24 O 1.21803 * 120.00155 * 233.67681 * 23 22 16 25 25 O 1.21801 * 120.00098 * 53.68921 * 23 22 16 26 26 H 0.96995 * 120.00344 * 0.02562 * 1 2 3 27 27 H 1.09010 * 109.46940 * 60.00229 * 9 7 2 28 28 H 1.08998 * 109.47289 * 300.00511 * 9 7 2 29 29 H 1.09001 * 109.47240 * 60.00220 * 10 9 7 30 30 H 1.09010 * 109.47043 * 300.00214 * 10 9 7 31 31 H 1.09001 * 109.46863 * 59.99828 * 11 10 9 32 32 H 1.08998 * 109.47055 * 300.00500 * 11 10 9 33 33 H 0.97007 * 119.99503 * 345.90766 * 12 11 10 34 34 H 1.08001 * 120.00624 * 179.74426 * 19 17 16 35 35 H 1.08001 * 119.99302 * 180.24795 * 20 19 17 36 36 H 1.08001 * 119.98685 * 179.76654 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4804 -4.9871 0.0020 12 7 2.4324 -6.1006 0.0011 13 16 1.9136 -7.6338 0.3507 14 8 1.1618 -7.5387 1.5528 15 8 3.0439 -8.4827 0.2062 16 6 0.7763 -8.1002 -0.9117 17 6 1.2447 -8.5801 -2.1221 18 17 2.9528 -8.7219 -2.3977 19 6 0.3514 -8.9416 -3.1145 20 6 -1.0089 -8.8334 -2.8925 21 6 -1.4760 -8.3540 -1.6833 22 6 -0.5835 -7.9871 -0.6931 23 7 -1.0846 -7.4736 0.6016 24 8 -1.8949 -8.1204 1.2408 25 8 -0.6867 -6.4041 1.0276 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5575 -0.8881 28 1 0.6247 -2.5563 0.8919 29 1 2.8727 -3.6040 0.8909 30 1 2.8714 -3.6047 -0.8891 31 1 0.8534 -5.0450 -0.8877 32 1 0.8541 -5.0447 0.8922 33 1 3.3667 -5.9397 -0.2042 34 1 0.7164 -9.3124 -4.0609 35 1 -1.7065 -9.1194 -3.6658 36 1 -2.5387 -8.2660 -1.5117 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000171713819.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:11 Heat of formation + Delta-G solvation = -39.111696 kcal Electronic energy + Delta-G solvation = -26676.867936 eV Core-core repulsion = 22511.427222 eV Total energy + Delta-G solvation = -4165.440715 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.32147 -40.01866 -37.64627 -37.17893 -36.49318 -36.09167 -36.01016 -33.24106 -32.76858 -32.00872 -30.87387 -27.01884 -26.39892 -24.34964 -23.23023 -22.86320 -20.75767 -20.08810 -19.38302 -18.77767 -18.23121 -17.86713 -17.41545 -16.56740 -16.37903 -16.12207 -15.62396 -15.59602 -14.68607 -14.54413 -14.50944 -14.35428 -13.61856 -13.00953 -12.73704 -12.59057 -12.43505 -12.32910 -12.28510 -12.12031 -11.88610 -11.69231 -11.45647 -11.37457 -11.03251 -10.89747 -10.87730 -10.63896 -10.56362 -10.50207 -9.92659 -9.86315 -9.43300 -9.29882 -9.08824 -8.33469 -5.98641 -4.01240 -0.60359 -0.15881 0.03514 0.68793 0.90857 1.30747 2.26057 2.73161 3.34387 3.38172 3.39105 3.41390 3.50172 3.82356 4.11416 4.20993 4.27827 4.42335 4.47562 4.80130 4.93005 5.13896 5.30912 5.37219 5.43580 5.68868 5.89998 6.02047 6.34470 6.62641 6.81283 6.93450 7.10728 7.53625 7.67352 7.81392 8.00721 8.41937 9.05193 9.62600 11.12556 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.013258 B = 0.003385 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.387559 B = 8270.211667 C = 8816.681660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.058 3.942 3 Si 0.892 3.108 4 H -0.278 1.278 5 H -0.288 1.288 6 H -0.276 1.276 7 C -0.522 4.522 8 H 0.055 0.945 9 C 0.022 3.978 10 C -0.114 4.114 11 C 0.109 3.891 12 N -1.096 6.096 13 S 2.675 3.325 14 O -0.933 6.933 15 O -0.938 6.938 16 C -0.640 4.640 17 C 0.058 3.942 18 Cl -0.001 7.001 19 C -0.095 4.095 20 C -0.045 4.045 21 C -0.081 4.081 22 C 0.073 3.927 23 N 0.008 4.992 24 O -0.143 6.143 25 O -0.081 6.081 26 H 0.261 0.739 27 H 0.017 0.983 28 H 0.024 0.976 29 H 0.060 0.940 30 H 0.053 0.947 31 H 0.054 0.946 32 H 0.099 0.901 33 H 0.420 0.580 34 H 0.161 0.839 35 H 0.165 0.835 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.778 -22.127 -9.321 24.023 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.144 4.144 3 Si 0.720 3.280 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.560 4.560 8 H 0.073 0.927 9 C -0.016 4.016 10 C -0.153 4.153 11 C -0.016 4.016 12 N -0.860 5.860 13 S 2.757 3.243 14 O -0.923 6.923 15 O -0.928 6.928 16 C -0.722 4.722 17 C 0.029 3.971 18 Cl 0.029 6.971 19 C -0.114 4.114 20 C -0.063 4.063 21 C -0.101 4.101 22 C -0.009 4.009 23 N 0.537 4.463 24 O -0.358 6.358 25 O -0.310 6.310 26 H 0.071 0.929 27 H 0.035 0.965 28 H 0.043 0.957 29 H 0.078 0.922 30 H 0.072 0.928 31 H 0.073 0.927 32 H 0.117 0.883 33 H 0.256 0.744 34 H 0.179 0.821 35 H 0.182 0.818 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -0.557 -22.925 -9.310 24.750 hybrid contribution 0.376 1.185 -0.634 1.395 sum -0.181 -21.740 -9.944 23.907 Atomic orbital electron populations 1.69948 1.06020 1.26726 1.50591 1.25008 0.94833 0.99192 0.95320 0.86665 0.79573 0.83196 0.78574 1.20365 1.21322 1.20201 1.21177 0.92980 0.90959 1.50907 0.92700 1.19066 0.93902 0.90785 0.97797 1.21858 0.99625 0.92646 1.01204 1.21903 0.90961 0.86095 1.02630 1.55384 1.19301 1.23183 1.88094 1.02939 0.73830 0.73571 0.73998 1.93742 1.72568 1.86018 1.39979 1.93669 1.47756 1.65198 1.86135 1.30944 1.09071 1.14659 1.17523 1.20406 0.88640 0.95703 0.92302 1.98509 1.07350 1.95488 1.95759 1.21618 0.92719 0.97849 0.99251 1.21481 0.95492 0.93422 0.95951 1.21176 1.00941 0.96048 0.91928 1.20471 0.92475 1.01280 0.86708 1.43417 1.00469 1.01262 1.01162 1.94548 1.27606 1.57783 1.55845 1.94626 1.58238 1.07481 1.70686 0.92926 0.96482 0.95740 0.92168 0.92808 0.92747 0.88321 0.74355 0.82106 0.81787 0.82179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.53 13.29 55.43 0.74 -25.80 16 2 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 3 Si 0.89 21.41 29.54 -169.99 -5.02 16.39 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 7 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.06 16 9 C 0.02 0.56 4.97 -27.89 -0.14 0.42 16 10 C -0.11 -2.20 5.29 -26.73 -0.14 -2.34 16 11 C 0.11 1.80 5.32 -4.05 -0.02 1.78 16 12 N -1.10 -15.22 6.00 -10.62 -0.06 -15.28 16 13 S 2.68 38.87 5.12 -107.50 -0.55 38.31 16 14 O -0.93 -16.51 13.37 -67.18 -0.90 -17.40 16 15 O -0.94 -13.99 15.26 -57.17 -0.87 -14.86 16 16 C -0.64 -7.96 5.91 -39.55 -0.23 -8.19 16 17 C 0.06 0.58 6.30 -39.50 -0.25 0.33 16 18 Cl 0.00 -0.01 25.88 -51.86 -1.34 -1.35 16 19 C -0.10 -0.61 9.83 -39.54 -0.39 -0.99 16 20 C -0.04 -0.24 10.05 -39.59 -0.40 -0.64 16 21 C -0.08 -0.67 9.87 -39.58 -0.39 -1.06 16 22 C 0.07 0.90 6.23 -79.95 -0.50 0.41 16 23 N 0.01 0.12 3.14 33.96 0.11 0.23 16 24 O -0.14 -2.29 19.17 -29.46 -0.56 -2.85 16 25 O -0.08 -1.43 12.86 -37.24 -0.48 -1.91 16 26 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.02 0.44 8.14 -51.92 -0.42 0.02 16 28 H 0.02 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 30 H 0.05 0.98 8.14 -51.92 -0.42 0.55 16 31 H 0.05 0.85 8.14 -51.93 -0.42 0.42 16 32 H 0.10 1.76 5.57 -51.93 -0.29 1.47 16 33 H 0.42 4.93 8.65 -34.46 -0.30 4.63 16 34 H 0.16 0.49 8.06 -52.49 -0.42 0.07 16 35 H 0.16 0.20 8.06 -52.49 -0.42 -0.22 16 36 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 338.44 15.07 5.10 5.10 Total: -1.00 -34.89 338.44 -10.23 -45.12 By element: Atomic # 1 Polarization: 1.32 SS G_CDS: -3.51 Total: -2.19 kcal Atomic # 6 Polarization: -20.64 SS G_CDS: -2.87 Total: -23.51 kcal Atomic # 7 Polarization: -41.63 SS G_CDS: 0.78 Total: -40.85 kcal Atomic # 8 Polarization: -34.21 SS G_CDS: -2.81 Total: -37.02 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Atomic # 16 Polarization: 38.87 SS G_CDS: -0.55 Total: 38.31 kcal Atomic # 17 Polarization: -0.01 SS G_CDS: -1.34 Total: -1.35 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -34.89 -10.23 -45.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171713819.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.007 kcal (2) G-P(sol) polarization free energy of solvation -34.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.229 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.112 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds