Wall clock time and date at job start Wed Apr 1 2020 05:33:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 119.99903 * 2 1 4 4 H 1.48507 * 109.46908 * 240.00131 * 3 2 1 5 5 H 1.48498 * 109.46954 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47328 * 120.00090 * 3 2 1 7 7 C 1.37884 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00050 * 179.97438 * 7 2 1 9 9 C 1.50698 * 119.99898 * 359.97438 * 7 2 1 10 10 C 1.52995 * 109.47223 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47427 * 180.02562 * 10 9 7 12 12 N 1.46494 * 109.47581 * 179.97438 * 11 10 9 13 13 S 1.65591 * 120.00550 * 165.90194 * 12 11 10 14 14 O 1.42103 * 106.40168 * 310.21732 * 13 12 11 15 15 O 1.42096 * 106.40956 * 177.29358 * 13 12 11 16 16 C 1.76210 * 107.21811 * 63.75088 * 13 12 11 17 17 C 1.38371 * 120.00063 * 81.82548 * 16 13 12 18 18 Cl 1.73593 * 120.01888 * 359.96004 * 17 16 13 19 19 C 1.38335 * 119.96842 * 180.23013 * 17 16 13 20 20 C 1.38244 * 119.98601 * 359.47746 * 19 17 16 21 21 C 1.38216 * 120.01057 * 0.52467 * 20 19 17 22 22 C 1.38192 * 120.00710 * 261.80920 * 16 13 12 23 23 N 1.48020 * 119.99140 * 0.02562 * 22 16 13 24 24 O 1.21803 * 120.00155 * 233.67681 * 23 22 16 25 25 O 1.21801 * 120.00098 * 53.68921 * 23 22 16 26 26 H 0.96995 * 120.00344 * 0.02562 * 1 2 3 27 27 H 1.09010 * 109.46940 * 60.00229 * 9 7 2 28 28 H 1.08998 * 109.47289 * 300.00511 * 9 7 2 29 29 H 1.09001 * 109.47240 * 60.00220 * 10 9 7 30 30 H 1.09010 * 109.47043 * 300.00214 * 10 9 7 31 31 H 1.09001 * 109.46863 * 59.99828 * 11 10 9 32 32 H 1.08998 * 109.47055 * 300.00500 * 11 10 9 33 33 H 0.97007 * 119.99503 * 345.90766 * 12 11 10 34 34 H 1.08001 * 120.00624 * 179.74426 * 19 17 16 35 35 H 1.08001 * 119.99302 * 180.24795 * 20 19 17 36 36 H 1.08001 * 119.98685 * 179.76654 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2126 5 1 1.2840 2.7464 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1940 0.0001 9 6 1.2511 -2.4992 0.0017 10 6 2.2453 -3.6621 0.0015 11 6 1.4804 -4.9871 0.0020 12 7 2.4324 -6.1006 0.0011 13 16 1.9136 -7.6338 0.3507 14 8 1.1618 -7.5387 1.5528 15 8 3.0439 -8.4827 0.2062 16 6 0.7763 -8.1002 -0.9117 17 6 1.2447 -8.5801 -2.1221 18 17 2.9528 -8.7219 -2.3977 19 6 0.3514 -8.9416 -3.1145 20 6 -1.0089 -8.8334 -2.8925 21 6 -1.4760 -8.3540 -1.6833 22 6 -0.5835 -7.9871 -0.6931 23 7 -1.0846 -7.4736 0.6016 24 8 -1.8949 -8.1204 1.2408 25 8 -0.6867 -6.4041 1.0276 26 1 -0.4850 0.8400 -0.0004 27 1 0.6241 -2.5575 -0.8881 28 1 0.6247 -2.5563 0.8919 29 1 2.8727 -3.6040 0.8909 30 1 2.8714 -3.6047 -0.8891 31 1 0.8534 -5.0450 -0.8877 32 1 0.8541 -5.0447 0.8922 33 1 3.3667 -5.9397 -0.2042 34 1 0.7164 -9.3124 -4.0609 35 1 -1.7065 -9.1194 -3.6658 36 1 -2.5387 -8.2660 -1.5117 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000171713819.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:33:10 Heat of formation + Delta-G solvation = -63.053724 kcal Electronic energy + Delta-G solvation = -26677.906141 eV Core-core repulsion = 22511.427222 eV Total energy + Delta-G solvation = -4166.478919 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -43.39512 -40.75132 -38.77731 -38.00423 -37.66560 -37.43182 -37.29834 -35.18684 -33.50748 -32.74869 -32.65575 -28.24271 -27.97881 -25.06562 -24.83428 -23.92984 -22.31036 -21.25875 -20.44515 -19.89479 -19.19981 -18.90619 -18.58316 -18.42182 -17.39071 -16.98089 -16.72278 -16.44615 -16.33661 -16.02092 -15.76450 -15.30843 -14.31771 -14.24223 -14.13153 -13.83250 -13.70890 -13.57983 -13.49808 -13.34006 -13.17247 -12.91755 -12.84318 -12.73732 -12.50754 -12.43687 -12.23550 -12.09533 -11.93649 -11.69035 -11.38973 -11.17663 -11.11137 -10.60951 -10.57471 -10.49516 -8.14981 -6.25622 -1.46494 -1.11393 -0.81200 -0.35649 -0.00437 0.52384 1.43427 1.46435 1.50949 1.54261 1.74960 2.28821 2.45026 2.66339 3.18569 3.22682 3.41822 3.49044 3.58659 3.69346 3.99621 4.17357 4.25684 4.42249 4.49523 4.60842 4.62747 4.90533 5.00604 5.13163 5.23148 5.30617 5.57103 5.78773 5.89966 5.93724 6.28033 6.29215 6.91120 7.43147 8.96685 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.013258 B = 0.003385 C = 0.003175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2111.387559 B = 8270.211667 C = 8816.681660 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.000 4.000 3 Si 0.963 3.037 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.269 1.269 7 C -0.542 4.542 8 H 0.063 0.937 9 C 0.024 3.976 10 C -0.102 4.102 11 C 0.123 3.877 12 N -1.091 6.091 13 S 2.684 3.316 14 O -0.974 6.974 15 O -0.947 6.947 16 C -0.660 4.660 17 C 0.050 3.950 18 Cl -0.008 7.008 19 C -0.079 4.079 20 C -0.015 4.015 21 C -0.076 4.076 22 C 0.044 3.956 23 N 0.009 4.991 24 O -0.143 6.143 25 O -0.140 6.140 26 H 0.263 0.737 27 H -0.001 1.001 28 H -0.006 1.006 29 H 0.061 0.939 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.081 0.919 33 H 0.430 0.570 34 H 0.204 0.796 35 H 0.222 0.778 36 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.617 -23.434 -12.525 26.578 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.197 4.197 3 Si 0.788 3.212 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.194 1.194 7 C -0.580 4.580 8 H 0.081 0.919 9 C -0.014 4.014 10 C -0.141 4.141 11 C -0.002 4.002 12 N -0.855 5.855 13 S 2.770 3.230 14 O -0.964 6.964 15 O -0.937 6.937 16 C -0.746 4.746 17 C 0.020 3.980 18 Cl 0.021 6.979 19 C -0.097 4.097 20 C -0.033 4.033 21 C -0.096 4.096 22 C -0.038 4.038 23 N 0.533 4.467 24 O -0.363 6.363 25 O -0.358 6.358 26 H 0.072 0.928 27 H 0.017 0.983 28 H 0.013 0.987 29 H 0.079 0.921 30 H 0.089 0.911 31 H 0.082 0.918 32 H 0.099 0.901 33 H 0.268 0.732 34 H 0.221 0.779 35 H 0.239 0.761 36 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.292 -24.152 -12.472 27.184 hybrid contribution 0.215 1.397 0.211 1.429 sum -0.078 -22.755 -12.261 25.848 Atomic orbital electron populations 1.70091 1.07768 1.27738 1.51651 1.25948 0.95714 1.03231 0.94848 0.85535 0.78262 0.78301 0.79128 1.19021 1.21054 1.19432 1.21659 0.93643 0.92195 1.50508 0.91891 1.18958 0.94418 0.92604 0.95445 1.21628 0.98518 0.91964 1.02034 1.21522 0.90814 0.85534 1.02377 1.55120 1.19524 1.22578 1.88316 1.02206 0.73639 0.73248 0.73889 1.93699 1.73267 1.86385 1.43021 1.93652 1.48489 1.65036 1.86507 1.30381 1.08447 1.17698 1.18072 1.20682 0.88912 0.96076 0.92290 1.98508 1.08205 1.95520 1.95620 1.22238 0.92599 0.95382 0.99527 1.22197 0.95898 0.89929 0.95280 1.21731 1.01536 0.94578 0.91744 1.20614 0.93297 1.04239 0.85689 1.43907 0.99800 1.00730 1.02253 1.94488 1.27688 1.57251 1.56882 1.94629 1.59722 1.08989 1.72510 0.92848 0.98274 0.98742 0.92059 0.91124 0.91824 0.90116 0.73227 0.77885 0.76127 0.80019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 2 C 0.00 0.02 5.46 84.66 0.46 0.49 16 3 Si 0.96 44.01 29.54 68.60 2.03 46.03 16 4 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 5 H -0.29 -12.81 7.11 99.48 0.71 -12.10 16 6 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 7 C -0.54 -30.45 9.11 25.60 0.23 -30.22 16 8 H 0.06 3.35 7.74 -2.91 -0.02 3.33 16 9 C 0.02 1.24 4.97 29.85 0.15 1.38 16 10 C -0.10 -4.04 5.29 30.59 0.16 -3.88 16 11 C 0.12 4.25 5.32 86.38 0.46 4.71 16 12 N -1.09 -31.13 6.00 -187.50 -1.12 -32.25 16 13 S 2.68 80.56 5.12 -56.49 -0.29 80.27 16 14 O -0.97 -36.80 13.37 -118.44 -1.58 -38.39 16 15 O -0.95 -28.62 15.26 -128.00 -1.95 -30.58 16 16 C -0.66 -15.96 5.91 22.29 0.13 -15.83 16 17 C 0.05 0.86 6.30 22.32 0.14 1.00 16 18 Cl -0.01 -0.15 25.88 -2.72 -0.07 -0.22 16 19 C -0.08 -0.60 9.83 22.29 0.22 -0.38 16 20 C -0.01 -0.07 10.05 22.27 0.22 0.15 16 21 C -0.08 -1.01 9.87 22.27 0.22 -0.79 16 22 C 0.04 1.06 6.23 36.37 0.23 1.28 16 23 N 0.01 0.30 3.14 -46.47 -0.15 0.16 16 24 O -0.14 -4.72 19.17 18.88 0.36 -4.35 16 25 O -0.14 -5.37 12.86 26.32 0.34 -5.04 16 26 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 27 H 0.00 -0.06 8.14 -2.38 -0.02 -0.08 16 28 H -0.01 -0.34 8.14 -2.39 -0.02 -0.35 16 29 H 0.06 2.38 8.14 -2.39 -0.02 2.36 16 30 H 0.07 2.54 8.14 -2.38 -0.02 2.52 16 31 H 0.06 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.08 3.14 5.57 -2.39 -0.01 3.12 16 33 H 0.43 10.17 8.65 -96.74 -0.84 9.33 16 34 H 0.20 -0.13 8.06 -2.91 -0.02 -0.15 16 35 H 0.22 -1.32 8.06 -2.91 -0.02 -1.35 16 36 H 0.18 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -81.13 338.44 0.78 -80.35 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: 0.31 Total: 2.49 kcal Atomic # 6 Polarization: -44.70 SS G_CDS: 2.63 Total: -42.08 kcal Atomic # 7 Polarization: -87.50 SS G_CDS: -0.99 Total: -88.49 kcal Atomic # 8 Polarization: -75.52 SS G_CDS: -2.84 Total: -78.35 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.03 kcal Atomic # 16 Polarization: 80.56 SS G_CDS: -0.29 Total: 80.27 kcal Atomic # 17 Polarization: -0.15 SS G_CDS: -0.07 Total: -0.22 kcal Total: -81.13 0.78 -80.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000171713819.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.292 kcal (2) G-P(sol) polarization free energy of solvation -81.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.836 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.054 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds