Wall clock time and date at job start Wed Apr 1 2020 05:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00356 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00478 * 3 2 1 6 6 H 1.48501 * 109.47006 * 150.00348 * 3 2 1 7 7 C 1.37884 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00191 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21695 * 120.00046 * 359.97438 * 13 12 11 15 15 C 1.46676 * 119.99656 * 179.97438 * 13 12 11 16 16 C 1.37881 * 126.22587 * 179.68696 * 15 13 12 17 17 C 1.39867 * 107.08684 * 179.85079 * 16 15 13 18 18 I 2.09500 * 126.06805 * 180.18110 * 17 16 15 19 19 C 1.35482 * 107.85744 * 0.42203 * 17 16 15 20 20 N 1.35575 * 108.86303 * 359.73572 * 19 17 16 21 21 H 0.97001 * 125.67653 * 180.02562 * 20 19 17 22 22 H 0.96997 * 120.00125 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 24 24 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 25 25 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 26 26 H 1.08996 * 109.47452 * 299.99818 * 10 9 7 27 27 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 28 28 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 29 29 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 30 30 H 1.08001 * 126.45488 * 359.96720 * 16 15 13 31 31 H 1.07996 * 125.56883 * 179.78071 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6366 -0.0022 12 7 6.0398 -4.0179 -0.0027 13 6 7.3649 -4.2642 -0.0033 14 8 8.1557 -3.3392 -0.0039 15 6 7.8537 -5.6471 -0.0032 16 6 9.1740 -6.0446 -0.0098 17 6 9.1820 -7.4433 -0.0036 18 53 10.8825 -8.6669 -0.0035 19 6 7.8949 -7.8661 -0.0029 20 7 7.0780 -6.7841 -0.0027 21 1 6.1083 -6.8074 -0.0019 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6805 0.8888 24 1 3.8745 -0.6801 -0.8912 25 1 3.6578 -3.1506 -0.8908 26 1 3.6585 -3.1503 0.8892 27 1 5.9155 -2.1225 0.8873 28 1 5.9141 -2.1231 -0.8927 29 1 5.4094 -4.7551 -0.0026 30 1 10.0389 -5.3979 -0.0165 31 1 7.5723 -8.8968 -0.0020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000172216259.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:54 Heat of formation + Delta-G solvation = 6.511850 kcal Electronic energy + Delta-G solvation = -15519.469707 eV Core-core repulsion = 12660.376354 eV Total energy + Delta-G solvation = -2859.093354 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 348.008 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -41.72819 -39.17898 -35.69310 -33.53093 -32.66850 -31.53532 -30.16450 -28.30940 -26.99373 -23.74389 -22.20785 -20.77347 -20.37062 -19.99884 -18.82782 -16.85485 -16.10656 -15.72476 -15.59638 -14.77536 -14.28746 -14.03364 -13.75816 -13.73995 -12.97729 -12.76821 -12.32337 -12.11442 -12.00458 -11.18773 -10.96065 -10.79214 -10.45356 -10.15306 -10.08812 -9.88780 -9.73278 -9.29816 -9.25042 -9.10738 -8.62044 -8.60810 -6.11830 -4.11100 0.97535 1.13801 2.08587 2.69956 3.12516 3.20801 3.27514 3.35445 3.39144 4.39560 4.53227 4.63339 4.85148 5.22191 5.24751 5.45081 5.53926 5.55162 5.89314 6.09552 6.15919 6.28518 6.33131 6.55284 6.67926 6.84822 7.14401 7.28085 7.41650 7.69708 8.07694 8.43715 8.91184 9.50191 11.01294 Molecular weight = 348.01amu Principal moments of inertia in cm(-1) A = 0.065038 B = 0.001885 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.415667 B =14848.723243 C =15253.387948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.067 3.933 3 Si 0.880 3.120 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.264 1.264 7 C -0.524 4.524 8 H 0.071 0.929 9 C -0.011 4.011 10 C -0.113 4.113 11 C 0.114 3.886 12 N -0.724 5.724 13 C 0.583 3.417 14 O -0.527 6.527 15 C -0.038 4.038 16 C -0.078 4.078 17 C -0.190 4.190 18 I -0.019 7.019 19 C 0.066 3.934 20 N -0.530 5.530 21 H 0.423 0.577 22 H 0.264 0.736 23 H 0.019 0.981 24 H 0.015 0.985 25 H 0.060 0.940 26 H 0.060 0.940 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.393 0.607 30 H 0.154 0.846 31 H 0.178 0.822 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.722 -23.826 0.011 32.924 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.541 5.541 2 C -0.135 4.135 3 Si 0.707 3.293 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.089 0.911 9 C -0.049 4.049 10 C -0.151 4.151 11 C -0.008 4.008 12 N -0.375 5.375 13 C 0.369 3.631 14 O -0.403 6.403 15 C -0.152 4.152 16 C -0.106 4.106 17 C -0.337 4.337 18 I 0.127 6.873 19 C -0.075 4.075 20 N -0.126 5.126 21 H 0.262 0.738 22 H 0.074 0.926 23 H 0.038 0.962 24 H 0.033 0.967 25 H 0.079 0.921 26 H 0.079 0.921 27 H 0.087 0.913 28 H 0.086 0.914 29 H 0.226 0.774 30 H 0.172 0.828 31 H 0.195 0.805 Dipole moment (debyes) X Y Z Total from point charges 24.097 -23.764 0.013 33.844 hybrid contribution -1.541 1.167 -0.022 1.933 sum 22.557 -22.596 -0.009 31.928 Atomic orbital electron populations 1.69905 1.06330 1.27042 1.50802 1.25033 0.94763 0.99288 0.94388 0.86770 0.80404 0.83469 0.78635 1.20204 1.21319 1.18867 1.21071 0.89242 0.94502 1.51369 0.91056 1.19503 0.97330 0.91291 0.96775 1.21717 0.90433 1.01303 1.01690 1.21734 0.96264 0.80428 1.02392 1.46066 1.06095 1.10320 1.74975 1.17004 0.82671 0.86294 0.77116 1.90863 1.55353 1.43903 1.50212 1.20607 0.91271 0.86404 1.16950 1.21156 0.95248 0.92919 1.01299 1.23611 0.94877 0.95887 1.19332 1.96627 1.29609 1.61950 1.99080 1.21878 0.88990 0.92473 1.04186 1.42136 1.09333 1.05450 1.55704 0.73797 0.92635 0.96221 0.96651 0.92122 0.92087 0.91342 0.91355 0.77360 0.82788 0.80471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.96 55.43 0.77 -26.55 16 2 C 0.07 1.91 5.47 -17.82 -0.10 1.81 16 3 Si 0.88 21.40 27.47 -169.99 -4.67 16.73 16 4 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 5 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.26 -6.18 6.54 56.52 0.37 -5.81 16 7 C -0.52 -14.43 9.66 -34.44 -0.33 -14.76 16 8 H 0.07 2.09 7.99 -52.49 -0.42 1.67 16 9 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 10 C -0.11 -2.00 5.27 -26.73 -0.14 -2.14 16 11 C 0.11 1.78 5.67 -4.04 -0.02 1.75 16 12 N -0.72 -9.13 5.55 -61.61 -0.34 -9.48 16 13 C 0.58 8.13 7.79 -12.86 -0.10 8.03 16 14 O -0.53 -9.41 16.88 5.19 0.09 -9.33 16 15 C -0.04 -0.42 7.06 -81.98 -0.58 -1.00 16 16 C -0.08 -0.87 10.63 -39.10 -0.42 -1.29 16 17 C -0.19 -1.73 6.51 -39.96 -0.26 -1.99 16 18 I -0.02 -0.16 40.67 -73.02 -2.97 -3.13 16 19 C 0.07 0.46 11.85 -16.88 -0.20 0.26 16 20 N -0.53 -3.90 5.99 -9.37 -0.06 -3.96 16 21 H 0.42 1.89 8.19 -40.82 -0.33 1.55 16 22 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 23 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 24 H 0.02 0.34 7.57 -51.93 -0.39 -0.05 16 25 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 26 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 29 H 0.39 3.70 7.60 -40.82 -0.31 3.39 16 30 H 0.15 1.76 8.06 -52.49 -0.42 1.34 16 31 H 0.18 0.72 8.06 -52.49 -0.42 0.30 16 LS Contribution 300.76 15.07 4.53 4.53 Total: -1.00 -32.93 300.76 -8.44 -41.37 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -3.53 Total: -0.52 kcal Atomic # 6 Polarization: -7.41 SS G_CDS: -2.26 Total: -9.67 kcal Atomic # 7 Polarization: -40.36 SS G_CDS: 0.38 Total: -39.99 kcal Atomic # 8 Polarization: -9.41 SS G_CDS: 0.09 Total: -9.33 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -4.67 Total: 16.73 kcal Atomic # 53 Polarization: -0.16 SS G_CDS: -2.97 Total: -3.13 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.93 -8.44 -41.37 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172216259.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.880 kcal (2) G-P(sol) polarization free energy of solvation -32.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.368 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.512 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds