Wall clock time and date at job start Wed Apr 1 2020 05:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 120.00155 * 2 1 4 4 H 1.48498 * 109.47123 * 270.00356 * 3 2 1 5 5 H 1.48506 * 109.46940 * 30.00478 * 3 2 1 6 6 H 1.48501 * 109.47006 * 150.00348 * 3 2 1 7 7 C 1.37884 * 119.99653 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00191 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99709 * 179.97438 * 7 2 1 10 10 C 1.52996 * 109.47130 * 179.97438 * 9 7 2 11 11 C 1.52997 * 109.47131 * 179.97438 * 10 9 7 12 12 N 1.46506 * 109.47289 * 180.02562 * 11 10 9 13 13 C 1.34774 * 120.00072 * 180.02562 * 12 11 10 14 14 O 1.21695 * 120.00046 * 359.97438 * 13 12 11 15 15 C 1.46676 * 119.99656 * 179.97438 * 13 12 11 16 16 C 1.37881 * 126.22587 * 179.68696 * 15 13 12 17 17 C 1.39867 * 107.08684 * 179.85079 * 16 15 13 18 18 I 2.09500 * 126.06805 * 180.18110 * 17 16 15 19 19 C 1.35482 * 107.85744 * 0.42203 * 17 16 15 20 20 N 1.35575 * 108.86303 * 359.73572 * 19 17 16 21 21 H 0.97001 * 125.67653 * 180.02562 * 20 19 17 22 22 H 0.96997 * 120.00125 * 359.97438 * 1 2 3 23 23 H 1.09001 * 109.46980 * 59.99845 * 9 7 2 24 24 H 1.09004 * 109.47113 * 299.99826 * 9 7 2 25 25 H 1.09001 * 109.46997 * 60.00245 * 10 9 7 26 26 H 1.08996 * 109.47452 * 299.99818 * 10 9 7 27 27 H 1.09001 * 109.47289 * 60.00050 * 11 10 9 28 28 H 1.09004 * 109.47261 * 300.00306 * 11 10 9 29 29 H 0.97001 * 119.99251 * 0.02562 * 12 11 10 30 30 H 1.08001 * 126.45488 * 359.96720 * 16 15 13 31 31 H 1.07996 * 125.56883 * 179.78071 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6526 0.7002 6 1 3.5468 1.4401 0.7000 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 -0.0011 10 6 4.0215 -2.6366 -0.0010 11 6 5.5514 -2.6366 -0.0022 12 7 6.0398 -4.0179 -0.0027 13 6 7.3649 -4.2642 -0.0033 14 8 8.1557 -3.3392 -0.0039 15 6 7.8537 -5.6471 -0.0032 16 6 9.1740 -6.0446 -0.0098 17 6 9.1820 -7.4433 -0.0036 18 53 10.8825 -8.6669 -0.0035 19 6 7.8949 -7.8661 -0.0029 20 7 7.0780 -6.7841 -0.0027 21 1 6.1083 -6.8074 -0.0019 22 1 -0.4850 0.8400 0.0004 23 1 3.8752 -0.6805 0.8888 24 1 3.8745 -0.6801 -0.8912 25 1 3.6578 -3.1506 -0.8908 26 1 3.6585 -3.1503 0.8892 27 1 5.9155 -2.1225 0.8873 28 1 5.9141 -2.1231 -0.8927 29 1 5.4094 -4.7551 -0.0026 30 1 10.0389 -5.3979 -0.0165 31 1 7.5723 -8.8968 -0.0020 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). I: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000172216259.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:54 Heat of formation + Delta-G solvation = -16.134776 kcal Electronic energy + Delta-G solvation = -15520.451739 eV Core-core repulsion = 12660.376354 eV Total energy + Delta-G solvation = -2860.075385 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 348.008 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -42.47375 -40.27080 -37.07441 -35.23893 -33.68238 -33.04400 -31.00840 -29.43692 -28.23385 -25.14840 -23.39230 -22.28325 -21.23273 -20.81910 -19.81150 -18.89922 -17.14731 -16.87210 -16.70483 -16.16656 -15.84573 -14.93699 -14.87156 -14.80128 -14.72198 -13.83869 -13.66474 -13.65044 -13.03305 -12.77053 -12.72716 -12.00208 -11.81513 -11.62153 -11.44109 -11.35634 -11.25902 -10.77137 -10.76947 -10.29496 -9.93363 -9.35331 -8.30396 -6.34196 0.30724 0.32160 1.36489 1.38281 1.38436 1.49693 1.92743 2.19360 2.21392 2.35501 3.05641 3.75519 4.02327 4.06630 4.16824 4.17224 4.45796 4.53930 4.81136 4.85908 4.86978 5.01678 5.25281 5.35163 5.44538 5.53709 5.53888 5.64182 6.25858 6.27714 6.46495 6.73988 7.04067 7.30808 8.85830 Molecular weight = 348.01amu Principal moments of inertia in cm(-1) A = 0.065038 B = 0.001885 C = 0.001835 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 430.415667 B =14848.723243 C =15253.387948 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.004 3.996 3 Si 0.946 3.054 4 H -0.268 1.268 5 H -0.286 1.286 6 H -0.247 1.247 7 C -0.530 4.530 8 H 0.039 0.961 9 C -0.013 4.013 10 C -0.100 4.100 11 C 0.126 3.874 12 N -0.713 5.713 13 C 0.585 3.415 14 O -0.574 6.574 15 C -0.059 4.059 16 C -0.087 4.087 17 C -0.210 4.210 18 I -0.011 7.011 19 C 0.094 3.906 20 N -0.514 5.514 21 H 0.439 0.561 22 H 0.266 0.734 23 H 0.021 0.979 24 H 0.020 0.980 25 H 0.066 0.934 26 H 0.066 0.934 27 H 0.061 0.939 28 H 0.062 0.938 29 H 0.411 0.589 30 H 0.141 0.859 31 H 0.216 0.784 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.778 -25.140 -0.001 34.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.193 4.193 3 Si 0.770 3.230 4 H -0.193 1.193 5 H -0.211 1.211 6 H -0.171 1.171 7 C -0.568 4.568 8 H 0.057 0.943 9 C -0.051 4.051 10 C -0.138 4.138 11 C 0.003 3.997 12 N -0.364 5.364 13 C 0.373 3.627 14 O -0.454 6.454 15 C -0.173 4.173 16 C -0.116 4.116 17 C -0.356 4.356 18 I 0.135 6.865 19 C -0.048 4.048 20 N -0.112 5.112 21 H 0.280 0.720 22 H 0.075 0.925 23 H 0.039 0.961 24 H 0.038 0.962 25 H 0.085 0.915 26 H 0.085 0.915 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.247 0.753 30 H 0.159 0.841 31 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges 25.123 -25.114 0.001 35.524 hybrid contribution -1.881 1.424 -0.020 2.360 sum 23.242 -23.690 -0.019 33.188 Atomic orbital electron populations 1.70051 1.08197 1.28124 1.52683 1.25979 0.95584 1.03421 0.94279 0.85716 0.79553 0.78599 0.79160 1.19303 1.21141 1.17079 1.21455 0.91867 0.93245 1.50205 0.94280 1.19476 0.94090 0.94699 0.96883 1.21482 0.91714 0.98232 1.02334 1.21381 0.94560 0.81960 1.01822 1.45807 1.06262 1.09771 1.74516 1.17303 0.82343 0.87058 0.76003 1.90834 1.56446 1.45608 1.52501 1.20077 0.91705 0.85949 1.19572 1.21197 0.95058 0.94005 1.01324 1.23749 0.96219 0.95194 1.20484 1.96632 1.29683 1.61046 1.99099 1.22465 0.88111 0.93630 1.00626 1.42080 1.10087 1.04363 1.54627 0.71962 0.92525 0.96067 0.96172 0.91494 0.91503 0.92063 0.92000 0.75322 0.84140 0.76763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.54 13.96 21.45 0.30 -58.24 16 2 C 0.00 0.25 5.47 84.66 0.46 0.71 16 3 Si 0.95 43.73 27.47 68.60 1.88 45.62 16 4 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 5 H -0.29 -13.03 7.11 99.48 0.71 -12.33 16 6 H -0.25 -10.66 6.54 99.48 0.65 -10.01 16 7 C -0.53 -29.32 9.66 25.60 0.25 -29.07 16 8 H 0.04 2.34 7.99 -2.91 -0.02 2.32 16 9 C -0.01 -0.59 4.04 29.85 0.12 -0.47 16 10 C -0.10 -3.36 5.27 30.59 0.16 -3.20 16 11 C 0.13 3.76 5.67 86.38 0.49 4.25 16 12 N -0.71 -16.85 5.55 -467.07 -2.59 -19.44 16 13 C 0.58 15.86 7.79 86.45 0.67 16.53 16 14 O -0.57 -20.66 16.88 -4.33 -0.07 -20.73 16 15 C -0.06 -1.22 7.06 40.35 0.28 -0.93 16 16 C -0.09 -1.87 10.63 22.58 0.24 -1.63 16 17 C -0.21 -3.42 6.51 22.03 0.14 -3.27 16 18 I -0.01 -0.16 40.67 -18.82 -0.77 -0.93 16 19 C 0.09 1.01 11.85 83.48 0.99 2.00 16 20 N -0.51 -6.09 5.99 -183.57 -1.10 -7.19 16 21 H 0.44 2.40 8.19 -92.71 -0.76 1.64 16 22 H 0.27 15.34 8.31 -92.71 -0.77 14.57 16 23 H 0.02 0.93 7.20 -2.39 -0.02 0.91 16 24 H 0.02 0.87 7.57 -2.38 -0.02 0.85 16 25 H 0.07 2.17 8.14 -2.39 -0.02 2.15 16 26 H 0.07 2.17 8.14 -2.39 -0.02 2.16 16 27 H 0.06 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.06 1.95 8.14 -2.38 -0.02 1.93 16 29 H 0.41 6.75 7.60 -92.71 -0.70 6.04 16 30 H 0.14 3.29 8.06 -2.91 -0.02 3.27 16 31 H 0.22 0.69 8.06 -2.91 -0.02 0.67 16 Total: -1.00 -72.27 300.76 1.11 -71.16 By element: Atomic # 1 Polarization: 5.20 SS G_CDS: -0.35 Total: 4.84 kcal Atomic # 6 Polarization: -18.90 SS G_CDS: 3.81 Total: -15.09 kcal Atomic # 7 Polarization: -81.48 SS G_CDS: -3.39 Total: -84.88 kcal Atomic # 8 Polarization: -20.66 SS G_CDS: -0.07 Total: -20.73 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 1.88 Total: 45.62 kcal Atomic # 53 Polarization: -0.16 SS G_CDS: -0.77 Total: -0.93 kcal Total: -72.27 1.11 -71.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000172216259.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.026 kcal (2) G-P(sol) polarization free energy of solvation -72.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.161 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds