Wall clock time and date at job start Wed Apr 1 2020 05:29:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46854 * 2 1 4 4 C 1.50702 * 109.47396 * 120.00213 * 2 1 3 5 5 H 1.08007 * 119.99618 * 114.34873 * 4 2 1 6 6 C 1.37869 * 119.99960 * 294.34805 * 4 2 1 7 7 N 1.31521 * 120.00032 * 158.26758 * 6 4 2 8 8 Si 1.86797 * 120.00356 * 338.54218 * 6 4 2 9 9 H 1.48495 * 109.47490 * 269.72714 * 8 6 4 10 10 H 1.48506 * 109.46917 * 29.72595 * 8 6 4 11 11 H 1.48498 * 109.47431 * 149.72062 * 8 6 4 12 12 N 1.46506 * 109.47220 * 240.00473 * 2 1 3 13 13 C 1.34778 * 119.99779 * 84.99104 * 12 2 1 14 14 O 1.21356 * 120.00036 * 0.02562 * 13 12 2 15 15 C 1.49347 * 119.99687 * 180.02562 * 13 12 2 16 16 O 1.21379 * 119.99902 * 0.02562 * 15 13 12 17 17 N 1.34776 * 119.99980 * 180.02562 * 15 13 12 18 18 C 1.39804 * 120.00011 * 185.20757 * 17 15 13 19 19 C 1.38902 * 120.03834 * 210.77548 * 18 17 15 20 20 C 1.38213 * 119.95657 * 179.74289 * 19 18 17 21 21 Cl 1.73603 * 119.97789 * 180.27767 * 20 19 18 22 22 C 1.38564 * 120.03972 * 0.53194 * 20 19 18 23 23 F 1.35100 * 119.96221 * 179.70056 * 22 20 19 24 24 C 1.38566 * 120.08309 * 359.72442 * 22 20 19 25 25 Cl 1.73609 * 119.98378 * 180.02562 * 24 22 20 26 26 C 1.38208 * 120.03825 * 0.02562 * 24 22 20 27 27 H 1.09005 * 109.47077 * 293.81966 * 1 2 3 28 28 H 1.08993 * 109.47358 * 53.82091 * 1 2 3 29 29 H 1.09000 * 109.46905 * 173.82648 * 1 2 3 30 30 H 0.97005 * 119.99558 * 355.21221 * 7 6 4 31 31 H 0.96996 * 120.00071 * 265.00468 * 12 2 1 32 32 H 0.97003 * 120.00091 * 5.20576 * 17 15 13 33 33 H 1.07999 * 120.02691 * 359.97438 * 19 18 17 34 34 H 1.08006 * 120.02018 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5760 -1.6387 1.1338 6 6 1.7981 -0.1754 2.4793 7 7 1.8352 -0.9479 3.5431 8 14 1.4204 1.6450 2.6598 9 1 2.6863 2.3963 2.8551 10 1 0.7393 2.1331 1.4337 11 1 0.5352 1.8530 3.8338 12 7 2.0184 -0.6905 -1.1963 13 6 2.1469 -0.0181 -2.3572 14 8 1.8586 1.1595 -2.4115 15 6 2.6442 -0.7222 -3.5768 16 8 2.9322 -1.9001 -3.5225 17 7 2.7733 -0.0496 -4.7376 18 6 3.1339 -0.7310 -5.9039 19 6 3.8676 -0.0828 -6.8892 20 6 4.2278 -0.7597 -8.0392 21 17 5.1510 0.0478 -9.2678 22 6 3.8480 -2.0807 -8.2143 23 9 4.1958 -2.7390 -9.3417 24 6 3.1115 -2.7274 -7.2348 25 17 2.6376 -4.3827 -7.4566 26 6 2.7540 -2.0553 -6.0813 27 1 -0.3633 0.4151 0.9402 28 1 -0.3634 0.6066 -0.8294 29 1 -0.3633 -1.0217 -0.1105 30 1 1.9583 -1.9049 3.4435 31 1 2.2490 -1.6317 -1.1528 32 1 2.6159 0.9072 -4.7639 33 1 4.1597 0.9482 -6.7553 34 1 2.1795 -2.5595 -5.3181 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000190811100.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:09 Heat of formation + Delta-G solvation = -95.726414 kcal Electronic energy + Delta-G solvation = -24710.965984 eV Core-core repulsion = 20417.566259 eV Total energy + Delta-G solvation = -4293.399724 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.023 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -49.40323 -41.28237 -39.59267 -38.31498 -37.30555 -36.91153 -35.62069 -34.78317 -32.60017 -31.39629 -30.17001 -29.76546 -25.51282 -24.86962 -24.02617 -22.82619 -20.97714 -19.93267 -19.24869 -18.46589 -17.95795 -17.54861 -17.03829 -16.39884 -16.26652 -15.91407 -15.38589 -15.27956 -14.83649 -14.17266 -14.16583 -14.07556 -13.76251 -13.53372 -13.35566 -12.87535 -12.85214 -12.44717 -12.35717 -11.94355 -11.83861 -11.72256 -11.56428 -11.45335 -11.37758 -10.66867 -10.54691 -10.36612 -9.88673 -9.54152 -9.36074 -9.28564 -8.67923 -8.54830 -8.41333 -6.71019 -4.33955 0.21322 0.30129 1.15999 1.42304 1.68630 2.22360 2.71958 3.31469 3.34069 3.36686 3.43757 3.50399 3.66325 4.16132 4.33939 4.37218 4.54889 4.55761 4.75117 5.02230 5.14885 5.33457 5.46333 5.50404 6.06609 6.19988 6.33187 6.46561 6.62538 6.70732 6.94789 7.12477 7.36489 7.49112 8.05878 8.15934 8.32845 8.67041 9.33578 10.68391 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.019911 B = 0.002339 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.913591 B =11968.217030 C =12954.231767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.240 3.760 3 H 0.049 0.951 4 C -0.629 4.629 5 H 0.066 0.934 6 C 0.046 3.954 7 N -0.887 5.887 8 Si 1.036 2.964 9 H -0.282 1.282 10 H -0.270 1.270 11 H -0.282 1.282 12 N -0.658 5.658 13 C 0.497 3.503 14 O -0.533 6.533 15 C 0.510 3.490 16 O -0.494 6.494 17 N -0.647 5.647 18 C 0.172 3.828 19 C -0.107 4.107 20 C -0.042 4.042 21 Cl -0.031 7.031 22 C 0.099 3.901 23 F -0.114 7.114 24 C -0.041 4.041 25 Cl -0.029 7.029 26 C -0.087 4.087 27 H 0.060 0.940 28 H 0.031 0.969 29 H 0.047 0.953 30 H 0.273 0.727 31 H 0.407 0.593 32 H 0.430 0.570 33 H 0.157 0.843 34 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.676 0.224 -24.621 24.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.138 3.862 3 H 0.067 0.933 4 C -0.667 4.667 5 H 0.084 0.916 6 C -0.162 4.162 7 N -0.519 5.519 8 Si 0.862 3.138 9 H -0.208 1.208 10 H -0.195 1.195 11 H -0.208 1.208 12 N -0.307 5.307 13 C 0.275 3.725 14 O -0.412 6.412 15 C 0.294 3.706 16 O -0.366 6.366 17 N -0.295 5.295 18 C 0.075 3.925 19 C -0.128 4.128 20 C -0.070 4.070 21 Cl -0.002 7.002 22 C 0.077 3.923 23 F -0.093 7.093 24 C -0.069 4.069 25 Cl 0.000 7.000 26 C -0.108 4.108 27 H 0.079 0.921 28 H 0.050 0.950 29 H 0.066 0.934 30 H 0.083 0.917 31 H 0.242 0.758 32 H 0.269 0.731 33 H 0.175 0.825 34 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges 2.394 1.286 -23.502 23.659 hybrid contribution 0.534 -1.486 -1.443 2.139 sum 2.928 -0.200 -24.945 25.117 Atomic orbital electron populations 1.22389 0.98241 1.00328 1.00239 1.19337 0.90988 0.94416 0.81455 0.93288 1.21998 1.42524 1.11481 0.90672 0.91631 1.25667 0.93046 1.05915 0.91553 1.70828 1.42551 1.06909 1.31565 0.84153 0.77737 0.75436 0.76479 1.20796 1.19532 1.20776 1.46308 1.60953 1.14778 1.08681 1.19568 0.81274 0.87298 0.84390 1.90744 1.50866 1.15019 1.84532 1.21036 0.77674 0.87274 0.84656 1.90777 1.45591 1.15566 1.84716 1.43231 1.67079 1.13593 1.05582 1.17337 0.96094 0.92013 0.87012 1.20749 0.98175 1.01957 0.91902 1.20414 1.01430 0.91503 0.93698 1.98416 1.71198 1.78338 1.52287 1.16950 1.01012 0.89492 0.84804 1.91578 1.89974 1.80144 1.47567 1.20567 1.02066 0.88843 0.95471 1.98420 1.90286 1.14350 1.96901 1.21158 0.99670 0.93679 0.96263 0.92146 0.94960 0.93400 0.91705 0.75753 0.73066 0.82502 0.81635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.20 8.93 37.16 0.33 -2.87 16 2 C 0.24 5.38 2.11 -69.08 -0.15 5.23 16 3 H 0.05 1.16 5.97 -51.93 -0.31 0.85 16 4 C -0.63 -16.22 8.96 -34.44 -0.31 -16.53 16 5 H 0.07 1.79 7.96 -52.48 -0.42 1.37 16 6 C 0.05 1.24 5.23 -17.82 -0.09 1.15 16 7 N -0.89 -25.41 13.70 55.43 0.76 -24.65 16 8 Si 1.04 23.53 26.36 -169.99 -4.48 19.05 16 9 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 10 H -0.27 -5.74 5.94 56.52 0.34 -5.40 16 11 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 12 N -0.66 -12.60 5.06 -55.39 -0.28 -12.88 16 13 C 0.50 8.48 7.85 -11.63 -0.09 8.39 16 14 O -0.53 -9.94 16.15 5.49 0.09 -9.86 16 15 C 0.51 7.14 7.64 -11.63 -0.09 7.05 16 16 O -0.49 -7.60 14.00 5.47 0.08 -7.53 16 17 N -0.65 -6.84 5.33 -10.29 -0.05 -6.90 16 18 C 0.17 1.70 6.32 -83.73 -0.53 1.17 16 19 C -0.11 -0.87 9.74 -39.34 -0.38 -1.25 16 20 C -0.04 -0.38 6.32 -39.47 -0.25 -0.63 16 21 Cl -0.03 -0.26 28.61 -51.86 -1.48 -1.75 16 22 C 0.10 1.01 7.25 -39.34 -0.29 0.72 16 23 F -0.11 -1.22 16.40 2.25 0.04 -1.18 16 24 C -0.04 -0.43 6.32 -39.47 -0.25 -0.68 16 25 Cl -0.03 -0.30 28.61 -51.86 -1.48 -1.78 16 26 C -0.09 -0.94 8.44 -39.35 -0.33 -1.27 16 27 H 0.06 1.28 5.71 -51.93 -0.30 0.98 16 28 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.27 7.75 8.73 -40.82 -0.36 7.40 16 31 H 0.41 7.42 7.99 -40.82 -0.33 7.09 16 32 H 0.43 3.72 8.29 -40.82 -0.34 3.39 16 33 H 0.16 0.89 8.06 -52.49 -0.42 0.47 16 34 H 0.17 1.95 6.24 -52.48 -0.33 1.62 16 LS Contribution 334.71 15.07 5.04 5.04 Total: -1.00 -28.56 334.71 -6.70 -35.27 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -2.50 Total: 6.65 kcal Atomic # 6 Polarization: 2.93 SS G_CDS: -2.42 Total: 0.51 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: 0.42 Total: -44.43 kcal Atomic # 8 Polarization: -17.55 SS G_CDS: 0.17 Total: -17.38 kcal Atomic # 9 Polarization: -1.22 SS G_CDS: 0.04 Total: -1.18 kcal Atomic # 14 Polarization: 23.53 SS G_CDS: -4.48 Total: 19.05 kcal Atomic # 17 Polarization: -0.56 SS G_CDS: -2.97 Total: -3.52 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.56 -6.70 -35.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190811100.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.461 kcal (2) G-P(sol) polarization free energy of solvation -28.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.022 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.265 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds