Wall clock time and date at job start Wed Apr 1 2020 05:29:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09004 * 109.46854 * 2 1 4 4 C 1.50702 * 109.47396 * 120.00213 * 2 1 3 5 5 H 1.08007 * 119.99618 * 114.34873 * 4 2 1 6 6 C 1.37869 * 119.99960 * 294.34805 * 4 2 1 7 7 N 1.31521 * 120.00032 * 158.26758 * 6 4 2 8 8 Si 1.86797 * 120.00356 * 338.54218 * 6 4 2 9 9 H 1.48495 * 109.47490 * 269.72714 * 8 6 4 10 10 H 1.48506 * 109.46917 * 29.72595 * 8 6 4 11 11 H 1.48498 * 109.47431 * 149.72062 * 8 6 4 12 12 N 1.46506 * 109.47220 * 240.00473 * 2 1 3 13 13 C 1.34778 * 119.99779 * 84.99104 * 12 2 1 14 14 O 1.21356 * 120.00036 * 0.02562 * 13 12 2 15 15 C 1.49347 * 119.99687 * 180.02562 * 13 12 2 16 16 O 1.21379 * 119.99902 * 0.02562 * 15 13 12 17 17 N 1.34776 * 119.99980 * 180.02562 * 15 13 12 18 18 C 1.39804 * 120.00011 * 185.20757 * 17 15 13 19 19 C 1.38902 * 120.03834 * 210.77548 * 18 17 15 20 20 C 1.38213 * 119.95657 * 179.74289 * 19 18 17 21 21 Cl 1.73603 * 119.97789 * 180.27767 * 20 19 18 22 22 C 1.38564 * 120.03972 * 0.53194 * 20 19 18 23 23 F 1.35100 * 119.96221 * 179.70056 * 22 20 19 24 24 C 1.38566 * 120.08309 * 359.72442 * 22 20 19 25 25 Cl 1.73609 * 119.98378 * 180.02562 * 24 22 20 26 26 C 1.38208 * 120.03825 * 0.02562 * 24 22 20 27 27 H 1.09005 * 109.47077 * 293.81966 * 1 2 3 28 28 H 1.08993 * 109.47358 * 53.82091 * 1 2 3 29 29 H 1.09000 * 109.46905 * 173.82648 * 1 2 3 30 30 H 0.97005 * 119.99558 * 355.21221 * 7 6 4 31 31 H 0.96996 * 120.00071 * 265.00468 * 12 2 1 32 32 H 0.97003 * 120.00091 * 5.20576 * 17 15 13 33 33 H 1.07999 * 120.02691 * 359.97438 * 19 18 17 34 34 H 1.08006 * 120.02018 * 179.97438 * 26 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.5760 -1.6387 1.1338 6 6 1.7981 -0.1754 2.4793 7 7 1.8352 -0.9479 3.5431 8 14 1.4204 1.6450 2.6598 9 1 2.6863 2.3963 2.8551 10 1 0.7393 2.1331 1.4337 11 1 0.5352 1.8530 3.8338 12 7 2.0184 -0.6905 -1.1963 13 6 2.1469 -0.0181 -2.3572 14 8 1.8586 1.1595 -2.4115 15 6 2.6442 -0.7222 -3.5768 16 8 2.9322 -1.9001 -3.5225 17 7 2.7733 -0.0496 -4.7376 18 6 3.1339 -0.7310 -5.9039 19 6 3.8676 -0.0828 -6.8892 20 6 4.2278 -0.7597 -8.0392 21 17 5.1510 0.0478 -9.2678 22 6 3.8480 -2.0807 -8.2143 23 9 4.1958 -2.7390 -9.3417 24 6 3.1115 -2.7274 -7.2348 25 17 2.6376 -4.3827 -7.4566 26 6 2.7540 -2.0553 -6.0813 27 1 -0.3633 0.4151 0.9402 28 1 -0.3634 0.6066 -0.8294 29 1 -0.3633 -1.0217 -0.1105 30 1 1.9583 -1.9049 3.4435 31 1 2.2490 -1.6317 -1.1528 32 1 2.6159 0.9072 -4.7639 33 1 4.1597 0.9482 -6.7553 34 1 2.1795 -2.5595 -5.3181 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000190811100.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:08 Heat of formation + Delta-G solvation = -114.515905 kcal Electronic energy + Delta-G solvation = -24711.780757 eV Core-core repulsion = 20417.566259 eV Total energy + Delta-G solvation = -4294.214498 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.023 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -50.21615 -42.34264 -40.70173 -39.48327 -38.04964 -37.72294 -37.11262 -35.90963 -34.48504 -32.16328 -31.72208 -30.77742 -27.01683 -26.44808 -24.82931 -23.85948 -22.34938 -21.40860 -20.55386 -19.55012 -19.08018 -18.80818 -18.08786 -17.58932 -17.21931 -17.03854 -16.66350 -16.26859 -15.72027 -15.60016 -15.25123 -15.04220 -14.94860 -14.66857 -14.64020 -14.48754 -14.24089 -13.61719 -13.51526 -13.26761 -13.24133 -12.88170 -12.65633 -12.45456 -12.41910 -12.16103 -12.13084 -11.61545 -11.40551 -11.22849 -10.83855 -10.47156 -10.14922 -10.13924 -9.50416 -8.82606 -6.45284 -0.62802 -0.45246 0.26531 0.40416 0.91566 1.13472 1.52638 1.53442 1.73880 1.83555 2.15039 2.46455 2.50307 2.66362 2.97906 3.29969 3.42060 3.63399 3.75628 3.81522 4.41271 4.46154 4.56677 4.64538 4.67636 4.69043 4.72611 5.01952 5.20218 5.30375 5.44023 5.55552 5.76058 5.99732 6.33908 6.48555 6.58782 6.92841 7.29758 8.56010 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.019911 B = 0.002339 C = 0.002161 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1405.913591 B =11968.217030 C =12954.231767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.244 3.756 3 H 0.043 0.957 4 C -0.627 4.627 5 H 0.038 0.962 6 C 0.000 4.000 7 N -0.921 5.921 8 Si 1.072 2.928 9 H -0.273 1.273 10 H -0.245 1.245 11 H -0.281 1.281 12 N -0.669 5.669 13 C 0.501 3.499 14 O -0.544 6.544 15 C 0.522 3.478 16 O -0.510 6.510 17 N -0.627 5.627 18 C 0.163 3.837 19 C -0.084 4.084 20 C -0.043 4.043 21 Cl -0.021 7.021 22 C 0.097 3.903 23 F -0.119 7.119 24 C -0.048 4.048 25 Cl -0.032 7.032 26 C -0.093 4.093 27 H 0.055 0.945 28 H 0.049 0.951 29 H 0.050 0.950 30 H 0.260 0.740 31 H 0.410 0.590 32 H 0.441 0.559 33 H 0.188 0.812 34 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.768 2.119 -26.665 26.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.140 3.860 3 H 0.061 0.939 4 C -0.664 4.664 5 H 0.056 0.944 6 C -0.201 4.201 7 N -0.554 5.554 8 Si 0.893 3.107 9 H -0.199 1.199 10 H -0.169 1.169 11 H -0.207 1.207 12 N -0.318 5.318 13 C 0.281 3.719 14 O -0.423 6.423 15 C 0.304 3.696 16 O -0.384 6.384 17 N -0.275 5.275 18 C 0.067 3.933 19 C -0.105 4.105 20 C -0.072 4.072 21 Cl 0.008 6.992 22 C 0.075 3.925 23 F -0.097 7.097 24 C -0.077 4.077 25 Cl -0.003 7.003 26 C -0.114 4.114 27 H 0.074 0.926 28 H 0.068 0.932 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.245 0.755 32 H 0.283 0.717 33 H 0.205 0.795 34 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 2.496 3.191 -25.614 25.933 hybrid contribution 0.574 -2.122 -0.953 2.396 sum 3.069 1.069 -26.567 26.765 Atomic orbital electron populations 1.22295 0.96851 1.00933 1.00690 1.19060 0.91929 0.93617 0.81396 0.93949 1.22160 1.41402 1.10436 0.92413 0.94402 1.26912 0.92603 1.09098 0.91524 1.70940 1.45474 1.06374 1.32630 0.83694 0.78237 0.71231 0.77512 1.19864 1.16869 1.20705 1.46112 1.61971 1.14930 1.08800 1.19912 0.80289 0.87033 0.84678 1.90731 1.51063 1.15610 1.84943 1.20269 0.78004 0.86780 0.84548 1.90794 1.46676 1.16087 1.84883 1.42968 1.65928 1.13956 1.04694 1.17341 0.97101 0.91814 0.87041 1.20972 0.96144 1.02962 0.90420 1.20474 1.01365 0.91138 0.94184 1.98427 1.70879 1.77987 1.51909 1.17085 1.00921 0.89976 0.84543 1.91569 1.89997 1.80353 1.47764 1.20556 1.02619 0.88828 0.95665 1.98416 1.90362 1.14632 1.96910 1.21100 0.99889 0.94216 0.96157 0.92622 0.93215 0.93108 0.93089 0.75471 0.71701 0.79452 0.82766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.97 8.93 71.98 0.64 -5.33 16 2 C 0.24 10.67 2.11 44.24 0.09 10.77 16 3 H 0.04 1.94 5.97 -2.38 -0.01 1.92 16 4 C -0.63 -32.62 8.96 25.60 0.23 -32.39 16 5 H 0.04 2.13 7.96 -2.91 -0.02 2.11 16 6 C 0.00 0.02 5.23 84.65 0.44 0.47 16 7 N -0.92 -53.90 13.70 21.45 0.29 -53.61 16 8 Si 1.07 46.68 26.36 68.60 1.81 48.49 16 9 H -0.27 -11.44 7.11 99.48 0.71 -10.73 16 10 H -0.25 -9.60 5.94 99.48 0.59 -9.01 16 11 H -0.28 -12.17 7.11 99.48 0.71 -11.47 16 12 N -0.67 -25.09 5.06 -447.52 -2.27 -27.36 16 13 C 0.50 16.32 7.85 87.24 0.68 17.01 16 14 O -0.54 -19.08 16.15 -3.27 -0.05 -19.13 16 15 C 0.52 13.71 7.64 87.24 0.67 14.37 16 16 O -0.51 -15.20 14.00 -3.34 -0.05 -15.25 16 17 N -0.63 -11.66 5.33 -304.82 -1.63 -13.29 16 18 C 0.16 2.83 6.32 38.19 0.24 3.07 16 19 C -0.08 -1.09 9.74 22.42 0.22 -0.88 16 20 C -0.04 -0.66 6.32 22.34 0.14 -0.52 16 21 Cl -0.02 -0.30 28.61 -2.72 -0.08 -0.38 16 22 C 0.10 1.80 7.25 22.43 0.16 1.96 16 23 F -0.12 -2.36 16.40 44.97 0.74 -1.62 16 24 C -0.05 -0.95 6.32 22.34 0.14 -0.81 16 25 Cl -0.03 -0.65 28.61 -2.72 -0.08 -0.73 16 26 C -0.09 -1.88 8.44 22.42 0.19 -1.69 16 27 H 0.05 2.26 5.71 -2.38 -0.01 2.25 16 28 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.05 1.96 8.14 -2.39 -0.02 1.95 16 30 H 0.26 15.35 8.73 -92.70 -0.81 14.54 16 31 H 0.41 14.95 7.99 -92.71 -0.74 14.21 16 32 H 0.44 6.23 8.29 -92.71 -0.77 5.46 16 33 H 0.19 1.27 8.06 -2.91 -0.02 1.25 16 34 H 0.15 3.53 6.24 -2.91 -0.02 3.51 16 Total: -1.00 -61.18 334.71 2.10 -59.08 By element: Atomic # 1 Polarization: 18.22 SS G_CDS: -0.45 Total: 17.77 kcal Atomic # 6 Polarization: 2.17 SS G_CDS: 3.85 Total: 6.02 kcal Atomic # 7 Polarization: -90.66 SS G_CDS: -3.60 Total: -94.26 kcal Atomic # 8 Polarization: -34.28 SS G_CDS: -0.10 Total: -34.38 kcal Atomic # 9 Polarization: -2.36 SS G_CDS: 0.74 Total: -1.62 kcal Atomic # 14 Polarization: 46.68 SS G_CDS: 1.81 Total: 48.49 kcal Atomic # 17 Polarization: -0.95 SS G_CDS: -0.16 Total: -1.10 kcal Total: -61.18 2.10 -59.08 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000190811100.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.440 kcal (2) G-P(sol) polarization free energy of solvation -61.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.616 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.076 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds