Wall clock time and date at job start Wed Apr 1 2020 05:22:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.47061 * 240.00082 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.46499 * 109.46992 * 179.97438 * 13 11 10 15 15 C 1.39888 * 120.00234 * 179.97438 * 14 13 11 16 16 C 1.38810 * 120.05171 * 0.02562 * 15 14 13 17 17 C 1.38348 * 119.93446 * 180.02562 * 16 15 14 18 18 F 1.35096 * 119.97445 * 180.02562 * 17 16 15 19 19 C 1.38556 * 120.05039 * 359.97438 * 17 16 15 20 20 Br 1.89099 * 119.94051 * 179.97438 * 19 17 16 21 21 C 1.38341 * 120.11972 * 0.02562 * 19 17 16 22 22 C 1.38282 * 120.06136 * 359.72431 * 21 19 17 23 23 F 1.35099 * 120.02775 * 180.27743 * 22 21 19 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 26 26 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 27 27 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 28 28 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 29 29 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 30 30 H 0.97000 * 120.00420 * 0.02562 * 14 13 11 31 31 H 1.08003 * 120.03706 * 359.97438 * 16 15 14 32 32 H 1.07996 * 119.96845 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 7 2.0007 -7.2975 0.0032 15 6 2.7001 -8.5089 0.0042 16 6 4.0882 -8.5102 0.0059 17 6 4.7775 -9.7098 0.0063 18 9 6.1284 -9.7120 0.0085 19 6 4.0832 -10.9089 0.0057 20 35 5.0285 -12.5467 0.0056 21 6 2.6998 -10.9101 0.0040 22 6 2.0061 -9.7140 0.0088 23 9 0.6551 -9.7160 0.0128 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 3.1568 -3.4354 0.0021 28 1 3.3612 -5.9713 -0.8858 29 1 3.3585 -5.9707 0.8942 30 1 1.0307 -7.2975 0.0017 31 1 4.6297 -7.5758 0.0060 32 1 2.1612 -11.8462 0.0031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000229065520.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:20 Heat of formation + Delta-G solvation = -99.656302 kcal Electronic energy + Delta-G solvation = -21039.259890 eV Core-core repulsion = 17102.925691 eV Total energy + Delta-G solvation = -3936.334198 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 348.003 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.30855 -49.07611 -39.83254 -38.91354 -35.80162 -34.40843 -32.53066 -31.96786 -30.68518 -29.61126 -27.74909 -26.16289 -23.57079 -22.65043 -22.12463 -20.10173 -18.84379 -17.85213 -17.56739 -17.04873 -16.34287 -16.04883 -15.75773 -15.67997 -15.41463 -15.29809 -14.82888 -14.60986 -14.39669 -13.86780 -13.59498 -13.40535 -12.91687 -12.73985 -12.68455 -12.08542 -11.96070 -11.67153 -11.43917 -11.10953 -10.95817 -10.63346 -10.43525 -10.07611 -9.55930 -9.44869 -9.21155 -8.87454 -8.13821 -7.86307 -6.27092 -4.35311 0.57365 0.65731 1.22814 2.76739 2.92599 2.99411 3.18783 3.24195 3.25298 3.68635 3.82989 3.87610 4.16597 4.25936 4.63496 4.90147 5.02703 5.09153 5.11600 5.16992 5.18433 5.34701 5.44051 5.64270 6.12295 6.65372 7.10284 7.14823 7.30569 7.34574 7.50341 7.83199 8.35123 8.57318 8.81357 9.31461 10.82884 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.029680 B = 0.001973 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.177308 B =14191.137973 C =15113.863489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.884 5.884 2 C 0.065 3.935 3 Si 0.906 3.094 4 H -0.275 1.275 5 H -0.285 1.285 6 H -0.275 1.275 7 C -0.548 4.548 8 H 0.064 0.936 9 C 0.249 3.751 10 N -0.703 5.703 11 C 0.493 3.507 12 O -0.550 6.550 13 C 0.095 3.905 14 N -0.711 5.711 15 C 0.243 3.757 16 C -0.215 4.215 17 C 0.175 3.825 18 F -0.120 7.120 19 C -0.175 4.175 20 Br -0.031 7.031 21 C -0.047 4.047 22 C 0.017 3.983 23 F -0.130 7.130 24 H 0.268 0.732 25 H 0.029 0.971 26 H 0.029 0.971 27 H 0.394 0.606 28 H 0.095 0.905 29 H 0.095 0.905 30 H 0.422 0.578 31 H 0.154 0.846 32 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.502 -24.823 0.010 27.359 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.140 4.140 3 Si 0.733 3.267 4 H -0.200 1.200 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.586 4.586 8 H 0.082 0.918 9 C 0.129 3.871 10 N -0.351 5.351 11 C 0.276 3.724 12 O -0.429 6.429 13 C -0.033 4.033 14 N -0.340 5.340 15 C 0.133 3.867 16 C -0.240 4.240 17 C 0.153 3.847 18 F -0.098 7.098 19 C -0.258 4.258 20 Br 0.053 6.947 21 C -0.068 4.068 22 C -0.008 4.008 23 F -0.109 7.109 24 H 0.078 0.922 25 H 0.047 0.953 26 H 0.047 0.953 27 H 0.227 0.773 28 H 0.113 0.887 29 H 0.113 0.887 30 H 0.263 0.737 31 H 0.172 0.828 32 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 10.882 -25.171 0.011 27.423 hybrid contribution 0.310 1.446 -0.004 1.479 sum 11.192 -23.726 0.007 26.233 Atomic orbital electron populations 1.69952 1.06148 1.27638 1.48381 1.24956 0.94941 0.99551 0.94504 0.86443 0.79412 0.82131 0.78757 1.19996 1.21009 1.19990 1.21149 0.93268 0.90289 1.53914 0.91802 1.19189 0.88188 0.81699 0.98013 1.46421 1.11588 1.05736 1.71316 1.20198 0.89255 0.84639 0.78309 1.90687 1.16551 1.84430 1.51269 1.21323 0.94985 0.83130 1.03867 1.44585 1.10142 1.01130 1.78130 1.17578 0.90997 0.85498 0.92644 1.20373 0.91793 0.98047 1.13797 1.16933 0.77186 0.92311 0.98276 1.91567 1.27915 1.97190 1.93122 1.21213 0.94432 0.91251 1.18862 1.96724 1.74804 1.25111 1.98030 1.20649 0.91699 0.97772 0.96657 1.16894 0.77581 0.92188 1.14154 1.91520 1.27573 1.97059 1.94700 0.92241 0.95257 0.95261 0.77276 0.88704 0.88703 0.73743 0.82802 0.82901 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.21 13.29 55.43 0.74 -24.47 16 2 C 0.06 1.73 5.46 -17.82 -0.10 1.63 16 3 Si 0.91 20.10 29.54 -169.99 -5.02 15.08 16 4 H -0.27 -5.97 7.11 56.52 0.40 -5.56 16 5 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 6 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 7 C -0.55 -14.10 9.28 -34.44 -0.32 -14.42 16 8 H 0.06 1.52 7.60 -52.49 -0.40 1.12 16 9 C 0.25 6.19 5.43 -5.19 -0.03 6.16 16 10 N -0.70 -13.11 5.55 -61.47 -0.34 -13.46 16 11 C 0.49 8.52 7.90 -10.98 -0.09 8.43 16 12 O -0.55 -11.85 15.67 5.56 0.09 -11.77 16 13 C 0.09 1.09 5.39 -5.19 -0.03 1.07 16 14 N -0.71 -8.69 5.71 -59.73 -0.34 -9.03 16 15 C 0.24 2.63 6.66 -83.66 -0.56 2.08 16 16 C -0.22 -2.05 9.29 -39.33 -0.37 -2.41 16 17 C 0.18 1.74 7.26 -39.42 -0.29 1.46 16 18 F -0.12 -1.24 16.72 2.25 0.04 -1.20 16 19 C -0.17 -1.69 6.23 -39.43 -0.25 -1.93 16 20 Br -0.03 -0.28 33.27 -68.01 -2.26 -2.54 16 21 C -0.05 -0.43 9.75 -39.53 -0.39 -0.81 16 22 C 0.02 0.18 7.31 -39.26 -0.29 -0.11 16 23 F -0.13 -1.56 16.64 2.25 0.04 -1.52 16 24 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 25 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 26 H 0.03 0.81 8.14 -51.93 -0.42 0.39 16 27 H 0.39 6.04 8.32 -40.82 -0.34 5.70 16 28 H 0.10 0.88 7.95 -51.93 -0.41 0.46 16 29 H 0.10 0.88 7.95 -51.93 -0.41 0.46 16 30 H 0.42 5.91 6.92 -40.82 -0.28 5.63 16 31 H 0.15 1.19 6.74 -52.48 -0.35 0.83 16 32 H 0.15 1.11 8.06 -52.49 -0.42 0.69 16 LS Contribution 315.79 15.07 4.76 4.76 Total: -1.00 -29.93 315.79 -7.60 -37.53 By element: Atomic # 1 Polarization: 8.08 SS G_CDS: -2.60 Total: 5.47 kcal Atomic # 6 Polarization: 3.83 SS G_CDS: -2.69 Total: 1.14 kcal Atomic # 7 Polarization: -47.01 SS G_CDS: 0.05 Total: -46.95 kcal Atomic # 8 Polarization: -11.85 SS G_CDS: 0.09 Total: -11.77 kcal Atomic # 9 Polarization: -2.80 SS G_CDS: 0.08 Total: -2.72 kcal Atomic # 14 Polarization: 20.10 SS G_CDS: -5.02 Total: 15.08 kcal Atomic # 35 Polarization: -0.28 SS G_CDS: -2.26 Total: -2.54 kcal Total LS contribution 4.76 Total: 4.76 kcal Total: -29.93 -7.60 -37.53 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229065520.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.129 kcal (2) G-P(sol) polarization free energy of solvation -29.929 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.598 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.527 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds