Wall clock time and date at job start Wed Apr 1 2020 05:22:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86803 * 119.99930 * 2 1 4 4 H 1.48506 * 109.47061 * 240.00082 * 3 2 1 5 5 H 1.48505 * 109.46988 * 359.97438 * 3 2 1 6 6 H 1.48494 * 109.47116 * 119.99856 * 3 2 1 7 7 C 1.37880 * 120.00327 * 179.97438 * 2 1 3 8 8 H 1.07995 * 119.99932 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99788 * 0.02562 * 7 2 1 10 10 N 1.46497 * 109.46835 * 180.02562 * 9 7 2 11 11 C 1.34780 * 119.99566 * 180.02562 * 10 9 7 12 12 O 1.21280 * 120.00423 * 359.97438 * 11 10 9 13 13 C 1.50701 * 119.99795 * 180.02562 * 11 10 9 14 14 N 1.46499 * 109.46992 * 179.97438 * 13 11 10 15 15 C 1.39888 * 120.00234 * 179.97438 * 14 13 11 16 16 C 1.38810 * 120.05171 * 0.02562 * 15 14 13 17 17 C 1.38348 * 119.93446 * 180.02562 * 16 15 14 18 18 F 1.35096 * 119.97445 * 180.02562 * 17 16 15 19 19 C 1.38556 * 120.05039 * 359.97438 * 17 16 15 20 20 Br 1.89099 * 119.94051 * 179.97438 * 19 17 16 21 21 C 1.38341 * 120.11972 * 0.02562 * 19 17 16 22 22 C 1.38282 * 120.06136 * 359.72431 * 21 19 17 23 23 F 1.35099 * 120.02775 * 180.27743 * 22 21 19 24 24 H 0.97000 * 120.00354 * 0.02562 * 1 2 3 25 25 H 1.09001 * 109.46980 * 59.99966 * 9 7 2 26 26 H 1.09002 * 109.47152 * 300.00066 * 9 7 2 27 27 H 0.96995 * 120.00423 * 359.97438 * 10 9 7 28 28 H 1.09002 * 109.47060 * 299.99722 * 13 11 10 29 29 H 1.09001 * 109.47380 * 59.99809 * 13 11 10 30 30 H 0.97000 * 120.00420 * 0.02562 * 14 13 11 31 31 H 1.08003 * 120.03706 * 359.97438 * 16 15 14 32 32 H 1.07996 * 119.96845 * 179.97438 * 21 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 7 2.2031 -3.6126 0.0018 11 6 1.7539 -4.8833 0.0015 12 8 0.5615 -5.1050 0.0006 13 6 2.7332 -6.0287 0.0033 14 7 2.0007 -7.2975 0.0032 15 6 2.7001 -8.5089 0.0042 16 6 4.0882 -8.5102 0.0059 17 6 4.7775 -9.7098 0.0063 18 9 6.1284 -9.7120 0.0085 19 6 4.0832 -10.9089 0.0057 20 35 5.0285 -12.5467 0.0056 21 6 2.6998 -10.9101 0.0040 22 6 2.0061 -9.7140 0.0088 23 9 0.6551 -9.7160 0.0128 24 1 -0.4850 0.8400 -0.0004 25 1 0.6248 -2.5571 -0.8897 26 1 0.6241 -2.5567 0.8903 27 1 3.1568 -3.4354 0.0021 28 1 3.3612 -5.9713 -0.8858 29 1 3.3585 -5.9707 0.8942 30 1 1.0307 -7.2975 0.0017 31 1 4.6297 -7.5758 0.0060 32 1 2.1612 -11.8462 0.0031 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000229065520.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:19 Heat of formation + Delta-G solvation = -119.882831 kcal Electronic energy + Delta-G solvation = -21040.136978 eV Core-core repulsion = 17102.925691 eV Total energy + Delta-G solvation = -3937.211286 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 348.003 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.08297 -49.94305 -40.96909 -40.03503 -36.79412 -36.11422 -34.41555 -32.78474 -31.44471 -30.70480 -29.23499 -27.35936 -24.84254 -23.94674 -23.06734 -21.55938 -19.87804 -18.84444 -18.48904 -18.34747 -17.43650 -17.20344 -17.18138 -16.70678 -16.46348 -16.43083 -16.27028 -15.47508 -15.37842 -15.02389 -14.91171 -14.42580 -14.13312 -13.90568 -13.86433 -13.66619 -13.37709 -12.96956 -12.68713 -12.41756 -12.27444 -12.25098 -11.52771 -11.34884 -10.99092 -10.85010 -10.80444 -9.97305 -9.91782 -8.70172 -8.29961 -6.46439 -0.20762 -0.09369 0.48813 1.44293 1.47526 1.55647 1.58800 1.79170 2.17336 2.34259 2.56677 2.99259 3.05048 3.05616 3.43095 3.72861 3.88226 4.21612 4.28223 4.31665 4.33732 4.56005 4.70904 4.89042 5.07585 5.21896 5.34476 5.42755 5.62317 5.81533 5.85108 6.28583 6.63883 6.78675 7.21350 7.37683 8.81730 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.029680 B = 0.001973 C = 0.001852 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 943.177308 B =14191.137973 C =15113.863489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.983 3.017 4 H -0.262 1.262 5 H -0.289 1.289 6 H -0.262 1.262 7 C -0.556 4.556 8 H 0.087 0.913 9 C 0.265 3.735 10 N -0.698 5.698 11 C 0.491 3.509 12 O -0.598 6.598 13 C 0.110 3.890 14 N -0.724 5.724 15 C 0.236 3.764 16 C -0.205 4.205 17 C 0.170 3.830 18 F -0.121 7.121 19 C -0.178 4.178 20 Br -0.024 7.024 21 C -0.039 4.039 22 C 0.002 3.998 23 F -0.142 7.142 24 H 0.268 0.732 25 H -0.010 1.010 26 H -0.010 1.010 27 H 0.414 0.586 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.411 0.589 31 H 0.177 0.823 32 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.425 -25.171 0.011 29.012 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.806 3.194 4 H -0.186 1.186 5 H -0.214 1.214 6 H -0.186 1.186 7 C -0.594 4.594 8 H 0.105 0.895 9 C 0.143 3.857 10 N -0.348 5.348 11 C 0.277 3.723 12 O -0.480 6.480 13 C -0.016 4.016 14 N -0.353 5.353 15 C 0.127 3.873 16 C -0.229 4.229 17 C 0.147 3.853 18 F -0.100 7.100 19 C -0.260 4.260 20 Br 0.060 6.940 21 C -0.060 4.060 22 C -0.022 4.022 23 F -0.120 7.120 24 H 0.077 0.923 25 H 0.008 0.992 26 H 0.008 0.992 27 H 0.251 0.749 28 H 0.147 0.853 29 H 0.147 0.853 30 H 0.250 0.750 31 H 0.195 0.805 32 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 13.884 -25.567 0.012 29.093 hybrid contribution -0.605 1.412 -0.004 1.536 sum 13.280 -24.155 0.008 27.564 Atomic orbital electron populations 1.70121 1.08273 1.28632 1.49935 1.26049 0.95734 1.03910 0.93927 0.85232 0.77906 0.76710 0.79542 1.18616 1.21433 1.18606 1.21596 0.94455 0.90436 1.52886 0.89452 1.18576 0.88667 0.84163 0.94339 1.46070 1.11648 1.05116 1.71938 1.21194 0.89651 0.85321 0.76122 1.90670 1.19293 1.85161 1.52845 1.21353 0.93135 0.80134 1.07019 1.44592 1.09695 1.01722 1.79255 1.17638 0.91442 0.84853 0.93323 1.20536 0.91097 0.98857 1.12435 1.17027 0.77154 0.92589 0.98487 1.91566 1.28035 1.97207 1.93162 1.21365 0.94640 0.91675 1.18366 1.96740 1.74625 1.24612 1.97985 1.20789 0.91609 0.97993 0.95629 1.17128 0.77211 0.92906 1.14990 1.91491 1.28527 1.97143 1.94888 0.92290 0.99232 0.99239 0.74926 0.85319 0.85327 0.75045 0.80548 0.81222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -54.61 13.29 21.45 0.28 -54.33 16 2 C 0.00 0.19 5.46 84.66 0.46 0.65 16 3 Si 0.98 40.70 29.54 68.60 2.03 42.73 16 4 H -0.26 -10.23 7.11 99.48 0.71 -9.52 16 5 H -0.29 -12.04 7.11 99.48 0.71 -11.33 16 6 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 7 C -0.56 -28.54 9.28 25.60 0.24 -28.30 16 8 H 0.09 3.97 7.60 -2.91 -0.02 3.94 16 9 C 0.27 13.63 5.43 85.63 0.46 14.09 16 10 N -0.70 -25.73 5.55 -466.78 -2.59 -28.32 16 11 C 0.49 16.75 7.90 87.66 0.69 17.44 16 12 O -0.60 -26.61 15.67 -3.03 -0.05 -26.66 16 13 C 0.11 2.24 5.39 85.63 0.46 2.71 16 14 N -0.72 -16.65 5.71 -342.90 -1.96 -18.61 16 15 C 0.24 4.67 6.66 38.19 0.25 4.92 16 16 C -0.20 -3.28 9.29 22.43 0.21 -3.07 16 17 C 0.17 2.95 7.26 22.37 0.16 3.11 16 18 F -0.12 -2.21 16.72 44.97 0.75 -1.45 16 19 C -0.18 -3.07 6.23 22.37 0.14 -2.93 16 20 Br -0.02 -0.39 33.27 -20.37 -0.68 -1.07 16 21 C -0.04 -0.66 9.75 22.30 0.22 -0.44 16 22 C 0.00 0.05 7.31 22.48 0.16 0.21 16 23 F -0.14 -3.38 16.64 44.97 0.75 -2.63 16 24 H 0.27 14.80 8.31 -92.71 -0.77 14.03 16 25 H -0.01 -0.60 8.14 -2.39 -0.02 -0.62 16 26 H -0.01 -0.61 8.14 -2.39 -0.02 -0.62 16 27 H 0.41 11.79 8.32 -92.71 -0.77 11.02 16 28 H 0.13 1.83 7.95 -2.39 -0.02 1.81 16 29 H 0.13 1.83 7.95 -2.39 -0.02 1.81 16 30 H 0.41 11.55 6.92 -92.71 -0.64 10.91 16 31 H 0.18 1.94 6.74 -2.91 -0.02 1.92 16 32 H 0.17 2.17 8.06 -2.91 -0.02 2.15 16 Total: -1.00 -67.76 315.79 1.80 -65.96 By element: Atomic # 1 Polarization: 16.18 SS G_CDS: -0.21 Total: 15.98 kcal Atomic # 6 Polarization: 4.94 SS G_CDS: 3.47 Total: 8.40 kcal Atomic # 7 Polarization: -97.00 SS G_CDS: -4.26 Total: -101.26 kcal Atomic # 8 Polarization: -26.61 SS G_CDS: -0.05 Total: -26.66 kcal Atomic # 9 Polarization: -5.59 SS G_CDS: 1.50 Total: -4.09 kcal Atomic # 14 Polarization: 40.70 SS G_CDS: 2.03 Total: 42.73 kcal Atomic # 35 Polarization: -0.39 SS G_CDS: -0.68 Total: -1.07 kcal Total: -67.76 1.80 -65.96 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000229065520.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.921 kcal (2) G-P(sol) polarization free energy of solvation -67.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.883 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds