Wall clock time and date at job start Wed Apr 1 2020 05:44:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 N 1.46504 * 109.46760 * 2 1
4 4 C 1.46501 * 120.00126 * 274.99781 * 3 2 1
5 5 C 1.50704 * 109.47326 * 275.00674 * 4 3 2
6 6 H 1.08006 * 119.99500 * 359.97438 * 5 4 3
7 7 C 1.37872 * 120.00185 * 179.97438 * 5 4 3
8 8 N 1.31516 * 119.99843 * 179.97438 * 7 5 4
9 9 Si 1.86803 * 119.99957 * 359.97438 * 7 5 4
10 10 H 1.48499 * 109.46974 * 89.99810 * 9 7 5
11 11 H 1.48498 * 109.46770 * 209.99656 * 9 7 5
12 12 H 1.48499 * 109.46982 * 330.00006 * 9 7 5
13 13 S 1.65600 * 120.00209 * 95.00396 * 3 2 1
14 14 O 1.42104 * 106.39850 * 336.45583 * 13 3 2
15 15 O 1.42094 * 106.40372 * 203.54007 * 13 3 2
16 16 C 1.76198 * 107.22183 * 89.99329 * 13 3 2
17 17 C 1.38372 * 120.00425 * 84.39192 * 16 13 3
18 18 Cl 1.73605 * 120.01566 * 359.95738 * 17 16 13
19 19 C 1.38330 * 119.97276 * 180.23234 * 17 16 13
20 20 C 1.38231 * 119.98963 * 359.47135 * 19 17 16
21 21 C 1.38220 * 120.00888 * 0.53133 * 20 19 17
22 22 C 1.38188 * 120.00776 * 264.37282 * 16 13 3
23 23 N 1.48016 * 119.99619 * 0.02562 * 22 16 13
24 24 O 1.21803 * 119.99568 * 292.76070 * 23 22 16
25 25 O 1.21798 * 120.00475 * 112.76418 * 23 22 16
26 26 H 1.09000 * 109.47187 * 60.00340 * 1 2 3
27 27 H 1.08999 * 109.46936 * 180.02562 * 1 2 3
28 28 H 1.08997 * 109.47115 * 300.00030 * 1 2 3
29 29 H 1.08997 * 109.47115 * 239.99970 * 2 1 3
30 30 H 1.09000 * 109.47187 * 119.99659 * 2 1 3
31 31 H 1.09003 * 109.46997 * 35.00007 * 4 3 2
32 32 H 1.08994 * 109.47112 * 155.00465 * 4 3 2
33 33 H 0.97000 * 119.99923 * 180.02562 * 8 7 5
34 34 H 1.08004 * 120.00422 * 179.74863 * 19 17 16
35 35 H 1.07998 * 120.00189 * 180.24831 * 20 19 17
36 36 H 1.08008 * 119.98710 * 179.76736 * 21 20 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0182 1.3813 0.0000
4 6 2.1582 2.1088 -1.2639
5 6 3.4947 1.7889 -1.8824
6 1 4.1723 1.1117 -1.3836
7 6 3.8524 2.3606 -3.0849
8 7 5.0190 2.0818 -3.6243
9 14 2.6801 3.5313 -3.9479
10 1 2.9434 4.9201 -3.4929
11 1 2.8852 3.4441 -5.4161
12 1 1.2799 3.1602 -3.6206
13 16 2.4122 2.1203 1.4286
14 8 1.6868 1.4416 2.4448
15 8 2.3056 3.5186 1.1998
16 6 4.1169 1.7942 1.7320
17 6 5.0876 2.5957 1.1576
18 17 4.6264 3.9221 0.1369
19 6 6.4259 2.3362 1.3923
20 6 6.7926 1.2831 2.2092
21 6 5.8225 0.4828 2.7827
22 6 4.4847 0.7382 2.5439
23 7 3.4465 -0.1193 3.1584
24 8 2.7027 0.3384 4.0073
25 8 3.3360 -1.2827 2.8152
26 1 -0.3633 0.5138 -0.8900
27 1 -0.3633 -1.0277 0.0005
28 1 -0.3633 0.5138 0.8900
29 1 1.8933 -0.5138 -0.8900
30 1 1.8933 -0.5138 0.8900
31 1 1.3617 1.8098 -1.9453
32 1 2.0921 3.1803 -1.0756
33 1 5.2708 2.4843 -4.4702
34 1 7.1841 2.9590 0.9409
35 1 7.8373 1.0828 2.3958
36 1 6.1095 -0.3422 3.4180
RHF calculation, no. of doubly occupied orbitals= 58
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000264024177.mol2 36
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:44:05
Heat of formation + Delta-G solvation = -20.359035 kcal
Electronic energy + Delta-G solvation = -28359.963209 eV
Core-core repulsion = 24195.335671 eV
Total energy + Delta-G solvation = -4164.627538 eV
No. of doubly occupied orbitals = 58
Molecular weight
(most abundant/longest-lived isotopes) = 348.042 amu
Computer time = 0.73 seconds
Orbital eigenvalues (eV)
-42.03585 -39.44908 -37.08922 -36.41254 -36.32360 -36.14762 -35.53543 -32.73864
-32.25196 -31.41040 -30.33099 -27.28714 -26.58628 -23.80992 -23.00161 -22.60523
-21.68704 -19.66280 -18.61380 -18.52892 -17.63982 -17.45813 -17.13619 -16.82294
-15.97974 -15.65267 -15.31334 -14.98683 -14.37674 -14.16247 -13.98417 -13.45455
-13.11562 -12.82118 -12.63814 -12.46042 -12.22784 -12.11476 -12.02635 -11.65688
-11.51424 -11.37458 -11.33854 -11.15228 -11.08495 -10.95612 -10.71001 -10.56473
-10.43430 -10.23441 -10.19337 -9.92589 -9.70149 -9.11294 -8.72006 -8.31111
-6.24556 -4.23879 0.01701 0.46717 0.60799 0.91150 1.32876 2.12125
2.82251 3.16684 3.21982 3.27271 3.29866 3.91632 4.06682 4.26381
4.34677 4.61830 4.80693 4.83595 4.92747 5.08561 5.23695 5.29102
5.53166 5.64191 5.66623 5.68949 5.95867 5.98130 6.21055 6.42154
6.48400 6.55676 6.73956 6.96091 7.19481 7.42048 7.78938 8.29877
8.75581 9.36026 10.87750
Molecular weight = 348.04amu
Principal moments of inertia in cm(-1)
A = 0.012431 B = 0.006769 C = 0.005444
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2251.938931 B = 4135.457504 C = 5141.647276
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.123 3.877
3 N -0.964 5.964
4 C 0.210 3.790
5 C -0.537 4.537
6 H 0.077 0.923
7 C 0.086 3.914
8 N -0.889 5.889
9 Si 0.857 3.143
10 H -0.272 1.272
11 H -0.283 1.283
12 H -0.261 1.261
13 S 2.662 3.338
14 O -0.943 6.943
15 O -0.930 6.930
16 C -0.638 4.638
17 C 0.083 3.917
18 Cl 0.028 6.972
19 C -0.098 4.098
20 C -0.049 4.049
21 C -0.098 4.098
22 C 0.070 3.930
23 N -0.002 5.002
24 O -0.052 6.052
25 O -0.171 6.171
26 H 0.060 0.940
27 H 0.065 0.935
28 H 0.058 0.942
29 H 0.088 0.912
30 H 0.066 0.934
31 H 0.045 0.955
32 H 0.046 0.954
33 H 0.265 0.735
34 H 0.158 0.842
35 H 0.158 0.842
36 H 0.150 0.850
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 2.481 -1.129 10.178 10.537
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C -0.003 4.003
3 N -0.804 5.804
4 C 0.087 3.913
5 C -0.576 4.576
6 H 0.095 0.905
7 C -0.118 4.118
8 N -0.526 5.526
9 Si 0.683 3.317
10 H -0.197 1.197
11 H -0.208 1.208
12 H -0.186 1.186
13 S 2.745 3.255
14 O -0.933 6.933
15 O -0.920 6.920
16 C -0.720 4.720
17 C 0.054 3.946
18 Cl 0.058 6.942
19 C -0.117 4.117
20 C -0.068 4.068
21 C -0.118 4.118
22 C -0.011 4.011
23 N 0.528 4.472
24 O -0.292 6.292
25 O -0.377 6.377
26 H 0.079 0.921
27 H 0.084 0.916
28 H 0.077 0.923
29 H 0.107 0.893
30 H 0.085 0.915
31 H 0.063 0.937
32 H 0.064 0.936
33 H 0.075 0.925
34 H 0.175 0.825
35 H 0.175 0.825
36 H 0.167 0.833
Dipole moment (debyes) X Y Z Total
from point charges 2.662 -0.166 10.017 10.366
hybrid contribution 0.172 0.130 -0.848 0.875
sum 2.834 -0.036 9.169 9.597
Atomic orbital electron populations
1.22182 0.95982 1.02080 1.02453 1.21192 0.94318 0.81653 1.03137
1.57287 1.76709 1.23780 1.22650 1.19768 0.98781 0.92298 0.80475
1.21288 1.00640 1.29145 1.06534 0.90530 1.24704 0.94745 0.95748
0.96604 1.69868 1.20346 1.43582 1.18823 0.87134 0.82613 0.82404
0.79552 1.19712 1.20839 1.18585 1.03358 0.73396 0.75019 0.73724
1.93741 1.68466 1.75288 1.55769 1.93640 1.84848 1.28448 1.85018
1.30969 1.29999 1.02847 1.08198 1.20469 0.92997 0.90693 0.90457
1.98545 1.91558 1.41164 1.62893 1.21589 0.94820 0.98097 0.97201
1.21331 1.00056 0.92271 0.93166 1.20912 0.89247 1.00748 1.00855
1.20305 0.89244 0.92774 0.98819 1.43502 1.00974 1.01415 1.01276
1.94611 1.35964 1.76792 1.21840 1.94553 1.76179 1.00419 1.66570
0.92095 0.91620 0.92262 0.89328 0.91536 0.93721 0.93593 0.92478
0.82484 0.82454 0.83254
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 21.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -2.60 10.24 37.16 0.38 -2.22 16
2 C 0.12 2.19 6.06 -4.04 -0.02 2.17 16
3 N -0.96 -19.51 2.77 -115.66 -0.32 -19.83 16
4 C 0.21 4.69 4.18 -5.19 -0.02 4.66 16
5 C -0.54 -13.36 8.34 -34.44 -0.29 -13.65 16
6 H 0.08 2.07 8.06 -52.48 -0.42 1.64 16
7 C 0.09 2.23 5.47 -17.82 -0.10 2.13 16
8 N -0.89 -24.45 13.96 55.43 0.77 -23.68 16
9 Si 0.86 19.86 27.47 -169.99 -4.67 15.19 16
10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16
11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16
12 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16
13 S 2.66 53.45 5.34 -107.50 -0.57 52.88 16
14 O -0.94 -19.24 12.34 -67.33 -0.83 -20.07 16
15 O -0.93 -19.86 13.64 -57.17 -0.78 -20.64 16
16 C -0.64 -11.74 5.97 -39.55 -0.24 -11.98 16
17 C 0.08 1.46 6.30 -39.50 -0.25 1.21 16
18 Cl 0.03 0.55 23.65 -51.86 -1.23 -0.68 16
19 C -0.10 -1.31 9.83 -39.55 -0.39 -1.70 16
20 C -0.05 -0.53 10.05 -39.59 -0.40 -0.93 16
21 C -0.10 -1.24 9.97 -39.58 -0.39 -1.64 16
22 C 0.07 1.17 6.13 -79.95 -0.49 0.68 16
23 N 0.00 -0.04 3.30 33.96 0.11 0.07 16
24 O -0.05 -0.98 15.95 -37.36 -0.60 -1.57 16
25 O -0.17 -3.08 18.44 -29.46 -0.54 -3.62 16
26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16
27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16
28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16
29 H 0.09 1.57 8.11 -51.93 -0.42 1.15 16
30 H 0.07 1.18 6.78 -51.93 -0.35 0.83 16
31 H 0.04 0.98 7.16 -51.93 -0.37 0.60 16
32 H 0.05 1.06 6.15 -51.93 -0.32 0.74 16
33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16
34 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16
35 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16
36 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16
LS Contribution 333.33 15.07 5.02 5.02
Total: -1.00 -30.32 333.33 -9.43 -39.75
By element:
Atomic # 1 Polarization: 2.03 SS G_CDS: -3.59 Total: -1.56 kcal
Atomic # 6 Polarization: -19.06 SS G_CDS: -2.21 Total: -21.27 kcal
Atomic # 7 Polarization: -44.00 SS G_CDS: 0.57 Total: -43.43 kcal
Atomic # 8 Polarization: -43.15 SS G_CDS: -2.75 Total: -45.90 kcal
Atomic # 14 Polarization: 19.86 SS G_CDS: -4.67 Total: 15.19 kcal
Atomic # 16 Polarization: 53.45 SS G_CDS: -0.57 Total: 52.88 kcal
Atomic # 17 Polarization: 0.55 SS G_CDS: -1.23 Total: -0.68 kcal
Total LS contribution 5.02 Total: 5.02 kcal
Total: -30.32 -9.43 -39.75 kcal
The number of atoms in the molecule is 36
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000264024177.mol2 36
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 19.390 kcal
(2) G-P(sol) polarization free energy of solvation -30.320 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.930 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal
(6) G-S(sol) free energy of system = (1) + (5) -20.359 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.73 seconds