Wall clock time and date at job start Wed Apr 1 2020 05:44:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46760 * 2 1 4 4 C 1.46501 * 120.00126 * 274.99781 * 3 2 1 5 5 C 1.50704 * 109.47326 * 275.00674 * 4 3 2 6 6 H 1.08006 * 119.99500 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00185 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99843 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99957 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46974 * 89.99810 * 9 7 5 11 11 H 1.48498 * 109.46770 * 209.99656 * 9 7 5 12 12 H 1.48499 * 109.46982 * 330.00006 * 9 7 5 13 13 S 1.65600 * 120.00209 * 95.00396 * 3 2 1 14 14 O 1.42104 * 106.39850 * 336.45583 * 13 3 2 15 15 O 1.42094 * 106.40372 * 203.54007 * 13 3 2 16 16 C 1.76198 * 107.22183 * 89.99329 * 13 3 2 17 17 C 1.38372 * 120.00425 * 84.39192 * 16 13 3 18 18 Cl 1.73605 * 120.01566 * 359.95738 * 17 16 13 19 19 C 1.38330 * 119.97276 * 180.23234 * 17 16 13 20 20 C 1.38231 * 119.98963 * 359.47135 * 19 17 16 21 21 C 1.38220 * 120.00888 * 0.53133 * 20 19 17 22 22 C 1.38188 * 120.00776 * 264.37282 * 16 13 3 23 23 N 1.48016 * 119.99619 * 0.02562 * 22 16 13 24 24 O 1.21803 * 119.99568 * 292.76070 * 23 22 16 25 25 O 1.21798 * 120.00475 * 112.76418 * 23 22 16 26 26 H 1.09000 * 109.47187 * 60.00340 * 1 2 3 27 27 H 1.08999 * 109.46936 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47115 * 300.00030 * 1 2 3 29 29 H 1.08997 * 109.47115 * 239.99970 * 2 1 3 30 30 H 1.09000 * 109.47187 * 119.99659 * 2 1 3 31 31 H 1.09003 * 109.46997 * 35.00007 * 4 3 2 32 32 H 1.08994 * 109.47112 * 155.00465 * 4 3 2 33 33 H 0.97000 * 119.99923 * 180.02562 * 8 7 5 34 34 H 1.08004 * 120.00422 * 179.74863 * 19 17 16 35 35 H 1.07998 * 120.00189 * 180.24831 * 20 19 17 36 36 H 1.08008 * 119.98710 * 179.76736 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.4947 1.7889 -1.8824 6 1 4.1723 1.1117 -1.3836 7 6 3.8524 2.3606 -3.0849 8 7 5.0190 2.0818 -3.6243 9 14 2.6801 3.5313 -3.9479 10 1 2.9434 4.9201 -3.4929 11 1 2.8852 3.4441 -5.4161 12 1 1.2799 3.1602 -3.6206 13 16 2.4122 2.1203 1.4286 14 8 1.6868 1.4416 2.4448 15 8 2.3056 3.5186 1.1998 16 6 4.1169 1.7942 1.7320 17 6 5.0876 2.5957 1.1576 18 17 4.6264 3.9221 0.1369 19 6 6.4259 2.3362 1.3923 20 6 6.7926 1.2831 2.2092 21 6 5.8225 0.4828 2.7827 22 6 4.4847 0.7382 2.5439 23 7 3.4465 -0.1193 3.1584 24 8 2.7027 0.3384 4.0073 25 8 3.3360 -1.2827 2.8152 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3617 1.8098 -1.9453 32 1 2.0921 3.1803 -1.0756 33 1 5.2708 2.4843 -4.4702 34 1 7.1841 2.9590 0.9409 35 1 7.8373 1.0828 2.3958 36 1 6.1095 -0.3422 3.4180 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264024177.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:05 Heat of formation + Delta-G solvation = -20.359035 kcal Electronic energy + Delta-G solvation = -28359.963209 eV Core-core repulsion = 24195.335671 eV Total energy + Delta-G solvation = -4164.627538 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.03585 -39.44908 -37.08922 -36.41254 -36.32360 -36.14762 -35.53543 -32.73864 -32.25196 -31.41040 -30.33099 -27.28714 -26.58628 -23.80992 -23.00161 -22.60523 -21.68704 -19.66280 -18.61380 -18.52892 -17.63982 -17.45813 -17.13619 -16.82294 -15.97974 -15.65267 -15.31334 -14.98683 -14.37674 -14.16247 -13.98417 -13.45455 -13.11562 -12.82118 -12.63814 -12.46042 -12.22784 -12.11476 -12.02635 -11.65688 -11.51424 -11.37458 -11.33854 -11.15228 -11.08495 -10.95612 -10.71001 -10.56473 -10.43430 -10.23441 -10.19337 -9.92589 -9.70149 -9.11294 -8.72006 -8.31111 -6.24556 -4.23879 0.01701 0.46717 0.60799 0.91150 1.32876 2.12125 2.82251 3.16684 3.21982 3.27271 3.29866 3.91632 4.06682 4.26381 4.34677 4.61830 4.80693 4.83595 4.92747 5.08561 5.23695 5.29102 5.53166 5.64191 5.66623 5.68949 5.95867 5.98130 6.21055 6.42154 6.48400 6.55676 6.73956 6.96091 7.19481 7.42048 7.78938 8.29877 8.75581 9.36026 10.87750 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.012431 B = 0.006769 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.938931 B = 4135.457504 C = 5141.647276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.123 3.877 3 N -0.964 5.964 4 C 0.210 3.790 5 C -0.537 4.537 6 H 0.077 0.923 7 C 0.086 3.914 8 N -0.889 5.889 9 Si 0.857 3.143 10 H -0.272 1.272 11 H -0.283 1.283 12 H -0.261 1.261 13 S 2.662 3.338 14 O -0.943 6.943 15 O -0.930 6.930 16 C -0.638 4.638 17 C 0.083 3.917 18 Cl 0.028 6.972 19 C -0.098 4.098 20 C -0.049 4.049 21 C -0.098 4.098 22 C 0.070 3.930 23 N -0.002 5.002 24 O -0.052 6.052 25 O -0.171 6.171 26 H 0.060 0.940 27 H 0.065 0.935 28 H 0.058 0.942 29 H 0.088 0.912 30 H 0.066 0.934 31 H 0.045 0.955 32 H 0.046 0.954 33 H 0.265 0.735 34 H 0.158 0.842 35 H 0.158 0.842 36 H 0.150 0.850 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.481 -1.129 10.178 10.537 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.804 5.804 4 C 0.087 3.913 5 C -0.576 4.576 6 H 0.095 0.905 7 C -0.118 4.118 8 N -0.526 5.526 9 Si 0.683 3.317 10 H -0.197 1.197 11 H -0.208 1.208 12 H -0.186 1.186 13 S 2.745 3.255 14 O -0.933 6.933 15 O -0.920 6.920 16 C -0.720 4.720 17 C 0.054 3.946 18 Cl 0.058 6.942 19 C -0.117 4.117 20 C -0.068 4.068 21 C -0.118 4.118 22 C -0.011 4.011 23 N 0.528 4.472 24 O -0.292 6.292 25 O -0.377 6.377 26 H 0.079 0.921 27 H 0.084 0.916 28 H 0.077 0.923 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.075 0.925 34 H 0.175 0.825 35 H 0.175 0.825 36 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges 2.662 -0.166 10.017 10.366 hybrid contribution 0.172 0.130 -0.848 0.875 sum 2.834 -0.036 9.169 9.597 Atomic orbital electron populations 1.22182 0.95982 1.02080 1.02453 1.21192 0.94318 0.81653 1.03137 1.57287 1.76709 1.23780 1.22650 1.19768 0.98781 0.92298 0.80475 1.21288 1.00640 1.29145 1.06534 0.90530 1.24704 0.94745 0.95748 0.96604 1.69868 1.20346 1.43582 1.18823 0.87134 0.82613 0.82404 0.79552 1.19712 1.20839 1.18585 1.03358 0.73396 0.75019 0.73724 1.93741 1.68466 1.75288 1.55769 1.93640 1.84848 1.28448 1.85018 1.30969 1.29999 1.02847 1.08198 1.20469 0.92997 0.90693 0.90457 1.98545 1.91558 1.41164 1.62893 1.21589 0.94820 0.98097 0.97201 1.21331 1.00056 0.92271 0.93166 1.20912 0.89247 1.00748 1.00855 1.20305 0.89244 0.92774 0.98819 1.43502 1.00974 1.01415 1.01276 1.94611 1.35964 1.76792 1.21840 1.94553 1.76179 1.00419 1.66570 0.92095 0.91620 0.92262 0.89328 0.91536 0.93721 0.93593 0.92478 0.82484 0.82454 0.83254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.60 10.24 37.16 0.38 -2.22 16 2 C 0.12 2.19 6.06 -4.04 -0.02 2.17 16 3 N -0.96 -19.51 2.77 -115.66 -0.32 -19.83 16 4 C 0.21 4.69 4.18 -5.19 -0.02 4.66 16 5 C -0.54 -13.36 8.34 -34.44 -0.29 -13.65 16 6 H 0.08 2.07 8.06 -52.48 -0.42 1.64 16 7 C 0.09 2.23 5.47 -17.82 -0.10 2.13 16 8 N -0.89 -24.45 13.96 55.43 0.77 -23.68 16 9 Si 0.86 19.86 27.47 -169.99 -4.67 15.19 16 10 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 11 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 12 H -0.26 -5.79 6.54 56.52 0.37 -5.42 16 13 S 2.66 53.45 5.34 -107.50 -0.57 52.88 16 14 O -0.94 -19.24 12.34 -67.33 -0.83 -20.07 16 15 O -0.93 -19.86 13.64 -57.17 -0.78 -20.64 16 16 C -0.64 -11.74 5.97 -39.55 -0.24 -11.98 16 17 C 0.08 1.46 6.30 -39.50 -0.25 1.21 16 18 Cl 0.03 0.55 23.65 -51.86 -1.23 -0.68 16 19 C -0.10 -1.31 9.83 -39.55 -0.39 -1.70 16 20 C -0.05 -0.53 10.05 -39.59 -0.40 -0.93 16 21 C -0.10 -1.24 9.97 -39.58 -0.39 -1.64 16 22 C 0.07 1.17 6.13 -79.95 -0.49 0.68 16 23 N 0.00 -0.04 3.30 33.96 0.11 0.07 16 24 O -0.05 -0.98 15.95 -37.36 -0.60 -1.57 16 25 O -0.17 -3.08 18.44 -29.46 -0.54 -3.62 16 26 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 27 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.09 1.57 8.11 -51.93 -0.42 1.15 16 30 H 0.07 1.18 6.78 -51.93 -0.35 0.83 16 31 H 0.04 0.98 7.16 -51.93 -0.37 0.60 16 32 H 0.05 1.06 6.15 -51.93 -0.32 0.74 16 33 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 34 H 0.16 1.69 8.06 -52.48 -0.42 1.27 16 35 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.15 1.45 8.06 -52.48 -0.42 1.03 16 LS Contribution 333.33 15.07 5.02 5.02 Total: -1.00 -30.32 333.33 -9.43 -39.75 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -3.59 Total: -1.56 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -2.21 Total: -21.27 kcal Atomic # 7 Polarization: -44.00 SS G_CDS: 0.57 Total: -43.43 kcal Atomic # 8 Polarization: -43.15 SS G_CDS: -2.75 Total: -45.90 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -4.67 Total: 15.19 kcal Atomic # 16 Polarization: 53.45 SS G_CDS: -0.57 Total: 52.88 kcal Atomic # 17 Polarization: 0.55 SS G_CDS: -1.23 Total: -0.68 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.32 -9.43 -39.75 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264024177.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.390 kcal (2) G-P(sol) polarization free energy of solvation -30.320 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.429 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.359 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds