Wall clock time and date at job start Wed Apr 1 2020 05:44:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46504 * 109.46760 * 2 1 4 4 C 1.46501 * 120.00126 * 274.99781 * 3 2 1 5 5 C 1.50704 * 109.47326 * 275.00674 * 4 3 2 6 6 H 1.08006 * 119.99500 * 359.97438 * 5 4 3 7 7 C 1.37872 * 120.00185 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99843 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 119.99957 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.46974 * 89.99810 * 9 7 5 11 11 H 1.48498 * 109.46770 * 209.99656 * 9 7 5 12 12 H 1.48499 * 109.46982 * 330.00006 * 9 7 5 13 13 S 1.65600 * 120.00209 * 95.00396 * 3 2 1 14 14 O 1.42104 * 106.39850 * 336.45583 * 13 3 2 15 15 O 1.42094 * 106.40372 * 203.54007 * 13 3 2 16 16 C 1.76198 * 107.22183 * 89.99329 * 13 3 2 17 17 C 1.38372 * 120.00425 * 84.39192 * 16 13 3 18 18 Cl 1.73605 * 120.01566 * 359.95738 * 17 16 13 19 19 C 1.38330 * 119.97276 * 180.23234 * 17 16 13 20 20 C 1.38231 * 119.98963 * 359.47135 * 19 17 16 21 21 C 1.38220 * 120.00888 * 0.53133 * 20 19 17 22 22 C 1.38188 * 120.00776 * 264.37282 * 16 13 3 23 23 N 1.48016 * 119.99619 * 0.02562 * 22 16 13 24 24 O 1.21803 * 119.99568 * 292.76070 * 23 22 16 25 25 O 1.21798 * 120.00475 * 112.76418 * 23 22 16 26 26 H 1.09000 * 109.47187 * 60.00340 * 1 2 3 27 27 H 1.08999 * 109.46936 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47115 * 300.00030 * 1 2 3 29 29 H 1.08997 * 109.47115 * 239.99970 * 2 1 3 30 30 H 1.09000 * 109.47187 * 119.99659 * 2 1 3 31 31 H 1.09003 * 109.46997 * 35.00007 * 4 3 2 32 32 H 1.08994 * 109.47112 * 155.00465 * 4 3 2 33 33 H 0.97000 * 119.99923 * 180.02562 * 8 7 5 34 34 H 1.08004 * 120.00422 * 179.74863 * 19 17 16 35 35 H 1.07998 * 120.00189 * 180.24831 * 20 19 17 36 36 H 1.08008 * 119.98710 * 179.76736 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1582 2.1088 -1.2639 5 6 3.4947 1.7889 -1.8824 6 1 4.1723 1.1117 -1.3836 7 6 3.8524 2.3606 -3.0849 8 7 5.0190 2.0818 -3.6243 9 14 2.6801 3.5313 -3.9479 10 1 2.9434 4.9201 -3.4929 11 1 2.8852 3.4441 -5.4161 12 1 1.2799 3.1602 -3.6206 13 16 2.4122 2.1203 1.4286 14 8 1.6868 1.4416 2.4448 15 8 2.3056 3.5186 1.1998 16 6 4.1169 1.7942 1.7320 17 6 5.0876 2.5957 1.1576 18 17 4.6264 3.9221 0.1369 19 6 6.4259 2.3362 1.3923 20 6 6.7926 1.2831 2.2092 21 6 5.8225 0.4828 2.7827 22 6 4.4847 0.7382 2.5439 23 7 3.4465 -0.1193 3.1584 24 8 2.7027 0.3384 4.0073 25 8 3.3360 -1.2827 2.8152 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8900 31 1 1.3617 1.8098 -1.9453 32 1 2.0921 3.1803 -1.0756 33 1 5.2708 2.4843 -4.4702 34 1 7.1841 2.9590 0.9409 35 1 7.8373 1.0828 2.3958 36 1 6.1095 -0.3422 3.4180 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264024177.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:04 Heat of formation + Delta-G solvation = -38.578779 kcal Electronic energy + Delta-G solvation = -28360.753277 eV Core-core repulsion = 24195.335671 eV Total energy + Delta-G solvation = -4165.417606 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.37375 -40.61551 -38.64246 -37.97595 -37.69282 -37.56690 -37.12198 -34.65700 -33.41726 -32.58390 -31.89653 -29.02261 -27.86187 -25.01076 -24.60091 -23.86722 -23.29111 -20.99701 -20.04227 -19.89316 -19.08923 -18.93766 -18.83678 -18.38130 -17.45764 -16.85636 -16.67052 -16.22922 -16.10203 -15.70454 -15.26437 -14.86023 -14.60226 -14.32707 -14.14235 -13.88477 -13.67663 -13.57619 -13.50870 -13.26087 -12.90018 -12.85945 -12.76460 -12.69491 -12.65110 -12.36412 -12.22585 -12.21123 -12.04293 -11.73144 -11.66118 -11.61981 -11.05317 -10.72354 -10.36353 -9.95250 -8.24965 -6.25587 -1.24744 -0.87685 -0.70730 -0.40776 0.05022 0.81112 1.33178 1.38665 1.43397 1.61215 1.85745 2.34475 2.41381 2.76995 3.10860 3.34697 3.49871 3.63866 3.67222 3.73281 3.79723 4.24258 4.27831 4.33221 4.58173 4.58614 4.64508 4.87482 4.90162 4.93802 4.95779 5.20901 5.29219 5.31024 5.46106 5.62144 6.31273 6.37351 6.72625 7.36062 8.89809 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.012431 B = 0.006769 C = 0.005444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2251.938931 B = 4135.457504 C = 5141.647276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.117 3.883 3 N -0.971 5.971 4 C 0.216 3.784 5 C -0.518 4.518 6 H 0.050 0.950 7 C 0.046 3.954 8 N -0.925 5.925 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.281 1.281 12 H -0.245 1.245 13 S 2.664 3.336 14 O -0.953 6.953 15 O -0.952 6.952 16 C -0.662 4.662 17 C 0.060 3.940 18 Cl -0.006 7.006 19 C -0.098 4.098 20 C -0.019 4.019 21 C -0.085 4.085 22 C 0.047 3.953 23 N 0.001 4.999 24 O -0.084 6.084 25 O -0.167 6.167 26 H 0.063 0.937 27 H 0.093 0.907 28 H 0.051 0.949 29 H 0.087 0.913 30 H 0.065 0.935 31 H 0.052 0.948 32 H 0.040 0.960 33 H 0.265 0.735 34 H 0.185 0.815 35 H 0.220 0.780 36 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.941 -2.034 10.812 11.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.008 4.008 3 N -0.811 5.811 4 C 0.092 3.908 5 C -0.558 4.558 6 H 0.068 0.932 7 C -0.154 4.154 8 N -0.565 5.565 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.206 1.206 12 H -0.168 1.168 13 S 2.751 3.249 14 O -0.943 6.943 15 O -0.942 6.942 16 C -0.747 4.747 17 C 0.031 3.969 18 Cl 0.024 6.976 19 C -0.117 4.117 20 C -0.037 4.037 21 C -0.104 4.104 22 C -0.034 4.034 23 N 0.529 4.471 24 O -0.318 6.318 25 O -0.377 6.377 26 H 0.082 0.918 27 H 0.111 0.889 28 H 0.070 0.930 29 H 0.105 0.895 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.058 0.942 33 H 0.075 0.925 34 H 0.202 0.798 35 H 0.236 0.764 36 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 4.038 -1.045 10.691 11.476 hybrid contribution -0.098 0.291 -0.942 0.991 sum 3.940 -0.754 9.750 10.542 Atomic orbital electron populations 1.22174 0.94093 1.03858 1.02215 1.21357 0.95943 0.80531 1.02943 1.57262 1.77500 1.24490 1.21830 1.19563 0.97581 0.92237 0.81425 1.21272 1.00990 1.27613 1.05890 0.93217 1.25223 0.95785 0.97050 0.97353 1.69959 1.21936 1.45184 1.19427 0.86498 0.82069 0.80802 0.78697 1.19782 1.20645 1.16833 1.02959 0.74053 0.74480 0.73456 1.93728 1.69558 1.75270 1.55769 1.93606 1.85700 1.29679 1.85231 1.30514 1.28765 1.04807 1.10644 1.20721 0.94676 0.90385 0.91159 1.98523 1.92057 1.42829 1.64196 1.22093 0.93447 0.99035 0.97097 1.22071 1.02410 0.89407 0.89799 1.21571 0.87475 1.01363 1.00012 1.20533 0.90247 0.92844 0.99802 1.43713 1.01023 1.01418 1.00941 1.94610 1.37104 1.76950 1.23088 1.94522 1.76011 1.01013 1.66178 0.91768 0.88868 0.93005 0.89452 0.91707 0.92968 0.94204 0.92538 0.79792 0.76373 0.79558 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.95 10.24 71.98 0.74 -4.21 16 2 C 0.12 4.17 6.06 86.38 0.52 4.70 16 3 N -0.97 -39.63 2.77 -519.84 -1.44 -41.06 16 4 C 0.22 9.67 4.18 85.63 0.36 10.03 16 5 C -0.52 -25.98 8.34 25.60 0.21 -25.77 16 6 H 0.05 2.73 8.06 -2.91 -0.02 2.71 16 7 C 0.05 2.41 5.47 84.65 0.46 2.87 16 8 N -0.93 -51.29 13.96 21.45 0.30 -50.99 16 9 Si 0.89 40.36 27.47 68.60 1.88 42.24 16 10 H -0.27 -12.27 7.11 99.48 0.71 -11.56 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 H -0.24 -10.29 6.54 99.48 0.65 -9.64 16 13 S 2.66 108.92 5.34 -56.49 -0.30 108.62 16 14 O -0.95 -39.73 12.34 -118.29 -1.46 -41.19 16 15 O -0.95 -41.92 13.64 -128.00 -1.75 -43.67 16 16 C -0.66 -24.15 5.97 22.29 0.13 -24.02 16 17 C 0.06 2.05 6.30 22.32 0.14 2.19 16 18 Cl -0.01 -0.24 23.65 -2.72 -0.06 -0.30 16 19 C -0.10 -2.32 9.83 22.29 0.22 -2.10 16 20 C -0.02 -0.31 10.05 22.26 0.22 -0.08 16 21 C -0.08 -1.81 9.97 22.27 0.22 -1.58 16 22 C 0.05 1.51 6.13 36.37 0.22 1.74 16 23 N 0.00 0.03 3.30 -46.47 -0.15 -0.12 16 24 O -0.08 -3.16 15.95 26.43 0.42 -2.74 16 25 O -0.17 -5.85 18.44 18.89 0.35 -5.50 16 26 H 0.06 1.87 8.14 -2.39 -0.02 1.85 16 27 H 0.09 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 29 H 0.09 3.08 8.11 -2.39 -0.02 3.07 16 30 H 0.06 2.31 6.78 -2.39 -0.02 2.29 16 31 H 0.05 2.25 7.16 -2.39 -0.02 2.23 16 32 H 0.04 1.85 6.15 -2.39 -0.01 1.84 16 33 H 0.27 14.02 8.31 -92.71 -0.77 13.25 16 34 H 0.18 3.30 8.06 -2.91 -0.02 3.28 16 35 H 0.22 1.00 8.06 -2.91 -0.02 0.98 16 36 H 0.19 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -68.40 333.33 2.32 -66.08 By element: Atomic # 1 Polarization: 3.81 SS G_CDS: 1.07 Total: 4.88 kcal Atomic # 6 Polarization: -39.71 SS G_CDS: 3.46 Total: -36.25 kcal Atomic # 7 Polarization: -90.88 SS G_CDS: -1.29 Total: -92.18 kcal Atomic # 8 Polarization: -90.66 SS G_CDS: -2.44 Total: -93.10 kcal Atomic # 14 Polarization: 40.36 SS G_CDS: 1.88 Total: 42.24 kcal Atomic # 16 Polarization: 108.92 SS G_CDS: -0.30 Total: 108.62 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -0.06 Total: -0.30 kcal Total: -68.40 2.32 -66.08 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264024177.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.501 kcal (2) G-P(sol) polarization free energy of solvation -68.401 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.579 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds