Wall clock time and date at job start Wed Apr 1 2020 05:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47198 * 2 1 4 4 C 1.50693 * 109.47160 * 120.00254 * 2 1 3 5 5 H 1.08000 * 120.00431 * 119.99989 * 4 2 1 6 6 C 1.37885 * 120.00167 * 299.99861 * 4 2 1 7 7 N 1.31514 * 119.99557 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00100 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47340 * 60.00148 * 8 6 4 10 10 H 1.48503 * 109.46818 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47178 * 299.99971 * 8 6 4 12 12 N 1.46502 * 109.47067 * 239.99912 * 2 1 3 13 13 C 1.46497 * 120.00023 * 300.00470 * 12 2 1 14 14 S 1.65605 * 119.99836 * 119.99748 * 12 2 1 15 15 O 1.42098 * 106.40122 * 336.46369 * 14 12 2 16 16 O 1.42097 * 106.40040 * 203.53964 * 14 12 2 17 17 C 1.76204 * 107.21535 * 90.00233 * 14 12 2 18 18 C 1.38375 * 120.00432 * 273.17392 * 17 14 12 19 19 Cl 1.73595 * 120.01519 * 0.02562 * 18 17 14 20 20 C 1.38329 * 119.96989 * 180.23169 * 18 17 14 21 21 C 1.38237 * 119.98867 * 359.77365 * 20 18 17 22 22 C 1.38221 * 120.01212 * 359.97438 * 21 20 18 23 23 C 1.38186 * 120.00488 * 92.92236 * 17 14 12 24 24 N 1.48017 * 119.99470 * 0.02562 * 23 17 14 25 25 O 1.21798 * 119.99798 * 309.40563 * 24 23 17 26 26 O 1.21805 * 120.00435 * 129.13581 * 24 23 17 27 27 H 1.09000 * 109.46793 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46806 * 299.99714 * 1 2 3 29 29 H 1.08997 * 109.46690 * 59.99966 * 1 2 3 30 30 H 0.97002 * 119.99581 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.46755 * 269.99371 * 13 12 2 32 32 H 1.08992 * 109.47607 * 29.99714 * 13 12 2 33 33 H 1.08999 * 109.47340 * 149.99781 * 13 12 2 34 34 H 1.08006 * 120.00817 * 179.79239 * 20 18 17 35 35 H 1.07995 * 119.99825 * 179.97438 * 21 20 18 36 36 H 1.08000 * 119.98722 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.8076 -1.1191 4.0077 10 1 1.8280 -0.4193 5.2204 11 1 1.8281 -2.5199 4.0081 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 16 2.9704 0.1142 -2.2863 15 8 2.6904 1.4973 -2.1193 16 8 2.8228 -0.5646 -3.5259 17 6 4.6445 -0.1182 -1.7881 18 6 5.2182 0.7410 -0.8676 19 17 4.2887 2.0478 -0.2027 20 6 6.5339 0.5608 -0.4806 21 6 7.2735 -0.4802 -1.0100 22 6 6.6983 -1.3412 -1.9256 23 6 5.3831 -1.1617 -2.3127 24 7 4.7680 -2.0838 -3.2936 25 8 3.6928 -2.6020 -3.0511 26 8 5.3348 -2.3207 -4.3454 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 0.7088 1.1612 3.4844 31 1 2.4157 -2.7377 -0.9718 32 1 0.6905 -2.3002 -0.9847 33 1 1.6237 -2.2852 -2.5002 34 1 6.9833 1.2331 0.2354 35 1 8.3008 -0.6208 -0.7083 36 1 7.2763 -2.1547 -2.3386 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264122736.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:49 Heat of formation + Delta-G solvation = -20.840596 kcal Electronic energy + Delta-G solvation = -28320.582920 eV Core-core repulsion = 24155.934500 eV Total energy + Delta-G solvation = -4164.648420 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.11199 -39.58282 -37.11191 -36.56892 -36.32574 -36.12763 -35.50020 -32.65923 -32.36356 -31.52487 -29.10676 -26.70580 -25.62378 -25.18191 -23.86215 -22.69978 -20.83480 -19.81123 -18.72000 -18.46982 -17.67808 -17.41870 -16.91050 -16.47419 -15.95902 -15.75156 -15.20734 -15.11414 -14.58881 -14.05257 -13.59266 -13.34805 -13.05514 -12.86495 -12.57431 -12.16810 -12.02846 -11.99132 -11.70637 -11.51785 -11.43511 -11.34743 -11.16240 -11.08371 -10.98811 -10.79162 -10.72764 -10.47898 -10.39587 -10.23296 -10.14893 -9.99705 -9.39554 -9.19131 -8.52393 -8.04057 -6.14716 -4.22691 -0.20140 0.30344 0.64604 1.00116 1.26708 1.92455 2.70683 3.19332 3.26119 3.26681 3.37608 3.94452 4.02535 4.20969 4.30183 4.48373 4.66496 4.71784 4.92533 5.16081 5.20705 5.38098 5.51700 5.75166 5.83882 6.29108 6.38798 6.54946 6.70396 6.82373 6.84956 7.04392 7.39765 7.57600 7.72643 7.74734 7.98061 8.19755 8.79559 9.43431 10.90315 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.012161 B = 0.006141 C = 0.005522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.806456 B = 4558.510948 C = 5069.677964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.260 3.740 3 H 0.068 0.932 4 C -0.525 4.525 5 H 0.060 0.940 6 C 0.069 3.931 7 N -0.885 5.885 8 Si 0.891 3.109 9 H -0.279 1.279 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.959 5.959 13 C 0.100 3.900 14 S 2.663 3.337 15 O -0.932 6.932 16 O -0.958 6.958 17 C -0.632 4.632 18 C 0.065 3.935 19 Cl 0.024 6.976 20 C -0.096 4.096 21 C -0.054 4.054 22 C -0.089 4.089 23 C 0.066 3.934 24 N 0.016 4.984 25 O -0.097 6.097 26 O -0.152 6.152 27 H 0.036 0.964 28 H 0.095 0.905 29 H 0.015 0.985 30 H 0.264 0.736 31 H 0.047 0.953 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.158 0.842 35 H 0.159 0.841 36 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.467 -1.655 -4.846 12.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.158 3.842 3 H 0.085 0.915 4 C -0.564 4.564 5 H 0.079 0.921 6 C -0.134 4.134 7 N -0.523 5.523 8 Si 0.719 3.281 9 H -0.204 1.204 10 H -0.211 1.211 11 H -0.201 1.201 12 N -0.801 5.801 13 C -0.046 4.046 14 S 2.745 3.255 15 O -0.922 6.922 16 O -0.948 6.948 17 C -0.713 4.713 18 C 0.036 3.964 19 Cl 0.054 6.946 20 C -0.116 4.116 21 C -0.073 4.073 22 C -0.109 4.109 23 C -0.016 4.016 24 N 0.543 4.457 25 O -0.325 6.325 26 O -0.366 6.366 27 H 0.055 0.945 28 H 0.114 0.886 29 H 0.034 0.966 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.176 0.824 35 H 0.177 0.823 36 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges 11.461 -0.460 -4.877 12.464 hybrid contribution 0.833 -0.928 1.334 1.826 sum 12.293 -1.389 -3.543 12.869 Atomic orbital electron populations 1.22082 0.97427 0.99998 1.01006 1.18995 0.92158 0.93190 0.79847 0.91484 1.21297 1.32065 1.13005 0.90083 0.92136 1.24850 0.94908 0.94896 0.98723 1.69856 1.36033 1.22501 1.23908 0.86678 0.79073 0.79970 0.82406 1.20442 1.21140 1.20128 1.57367 1.60257 1.22530 1.39923 1.21477 1.01519 0.80288 1.01282 1.03295 0.73114 0.74690 0.74383 1.93663 1.82270 1.30152 1.86105 1.93622 1.85040 1.75306 1.40861 1.31253 1.29617 1.01883 1.08519 1.20539 0.93125 0.90927 0.91818 1.98556 1.70302 1.43311 1.82462 1.21620 0.92161 0.98444 0.99328 1.21356 1.00645 0.92037 0.93281 1.21021 0.91455 1.00888 0.97512 1.20358 0.94434 0.92524 0.94259 1.43411 1.00671 1.00534 1.01092 1.94581 1.06332 1.49651 1.81976 1.94513 1.64351 1.66120 1.11662 0.94481 0.88627 0.96624 0.92549 0.93437 0.90337 0.90461 0.82411 0.82307 0.82804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.35 8.95 37.16 0.33 -3.01 16 2 C 0.26 6.12 2.62 -69.08 -0.18 5.94 16 3 H 0.07 1.68 5.45 -51.93 -0.28 1.40 16 4 C -0.52 -12.97 8.37 -34.44 -0.29 -13.26 16 5 H 0.06 1.49 7.65 -52.49 -0.40 1.08 16 6 C 0.07 1.75 5.30 -17.82 -0.09 1.65 16 7 N -0.88 -23.23 11.32 55.43 0.63 -22.60 16 8 Si 0.89 19.82 29.54 -169.99 -5.02 14.80 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 N -0.96 -20.12 3.06 -115.86 -0.35 -20.48 16 13 C 0.10 1.86 8.34 59.85 0.50 2.36 16 14 S 2.66 54.50 5.05 -107.50 -0.54 53.96 16 15 O -0.93 -20.41 13.57 -57.17 -0.78 -21.18 16 16 O -0.96 -20.45 12.94 -67.09 -0.87 -21.31 16 17 C -0.63 -11.28 5.97 -39.55 -0.24 -11.52 16 18 C 0.07 1.06 6.30 -39.50 -0.25 0.81 16 19 Cl 0.02 0.43 24.28 -51.86 -1.26 -0.83 16 20 C -0.10 -1.12 9.83 -39.55 -0.39 -1.51 16 21 C -0.05 -0.51 10.05 -39.59 -0.40 -0.91 16 22 C -0.09 -1.04 9.83 -39.58 -0.39 -1.43 16 23 C 0.07 1.07 6.26 -79.96 -0.50 0.57 16 24 N 0.02 0.28 3.23 33.96 0.11 0.39 16 25 O -0.10 -1.83 12.48 -37.16 -0.46 -2.29 16 26 O -0.15 -2.67 19.14 -29.46 -0.56 -3.23 16 27 H 0.04 0.79 6.66 -51.93 -0.35 0.45 16 28 H 0.10 2.38 6.07 -51.93 -0.32 2.07 16 29 H 0.01 0.32 8.14 -51.93 -0.42 -0.10 16 30 H 0.26 6.68 8.31 -40.82 -0.34 6.34 16 31 H 0.05 0.84 7.74 -51.93 -0.40 0.44 16 32 H 0.08 1.40 6.43 -51.93 -0.33 1.07 16 33 H 0.08 1.37 5.78 -51.93 -0.30 1.07 16 34 H 0.16 1.33 8.06 -52.48 -0.42 0.91 16 35 H 0.16 0.77 8.06 -52.49 -0.42 0.35 16 36 H 0.15 1.35 8.06 -52.49 -0.42 0.93 16 LS Contribution 324.13 15.07 4.88 4.88 Total: -1.00 -30.29 324.13 -9.33 -39.62 By element: Atomic # 1 Polarization: 1.80 SS G_CDS: -3.21 Total: -1.41 kcal Atomic # 6 Polarization: -18.42 SS G_CDS: -1.89 Total: -20.31 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: 0.38 Total: -42.69 kcal Atomic # 8 Polarization: -45.35 SS G_CDS: -2.67 Total: -48.02 kcal Atomic # 14 Polarization: 19.82 SS G_CDS: -5.02 Total: 14.80 kcal Atomic # 16 Polarization: 54.50 SS G_CDS: -0.54 Total: 53.96 kcal Atomic # 17 Polarization: 0.43 SS G_CDS: -1.26 Total: -0.83 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.29 -9.33 -39.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264122736.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.776 kcal (2) G-P(sol) polarization free energy of solvation -30.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.617 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.841 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds