Wall clock time and date at job start Wed Apr 1 2020 05:42:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08996 * 109.47198 * 2 1 4 4 C 1.50693 * 109.47160 * 120.00254 * 2 1 3 5 5 H 1.08000 * 120.00431 * 119.99989 * 4 2 1 6 6 C 1.37885 * 120.00167 * 299.99861 * 4 2 1 7 7 N 1.31514 * 119.99557 * 0.02562 * 6 4 2 8 8 Si 1.86794 * 120.00100 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.47340 * 60.00148 * 8 6 4 10 10 H 1.48503 * 109.46818 * 179.97438 * 8 6 4 11 11 H 1.48502 * 109.47178 * 299.99971 * 8 6 4 12 12 N 1.46502 * 109.47067 * 239.99912 * 2 1 3 13 13 C 1.46497 * 120.00023 * 300.00470 * 12 2 1 14 14 S 1.65605 * 119.99836 * 119.99748 * 12 2 1 15 15 O 1.42098 * 106.40122 * 336.46369 * 14 12 2 16 16 O 1.42097 * 106.40040 * 203.53964 * 14 12 2 17 17 C 1.76204 * 107.21535 * 90.00233 * 14 12 2 18 18 C 1.38375 * 120.00432 * 273.17392 * 17 14 12 19 19 Cl 1.73595 * 120.01519 * 0.02562 * 18 17 14 20 20 C 1.38329 * 119.96989 * 180.23169 * 18 17 14 21 21 C 1.38237 * 119.98867 * 359.77365 * 20 18 17 22 22 C 1.38221 * 120.01212 * 359.97438 * 21 20 18 23 23 C 1.38186 * 120.00488 * 92.92236 * 17 14 12 24 24 N 1.48017 * 119.99470 * 0.02562 * 23 17 14 25 25 O 1.21798 * 119.99798 * 309.40563 * 24 23 17 26 26 O 1.21805 * 120.00435 * 129.13581 * 24 23 17 27 27 H 1.09000 * 109.46793 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46806 * 299.99714 * 1 2 3 29 29 H 1.08997 * 109.46690 * 59.99966 * 1 2 3 30 30 H 0.97002 * 119.99581 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.46755 * 269.99371 * 13 12 2 32 32 H 1.08992 * 109.47607 * 29.99714 * 13 12 2 33 33 H 1.08999 * 109.47340 * 149.99781 * 13 12 2 34 34 H 1.08006 * 120.00817 * 179.79239 * 20 18 17 35 35 H 1.07995 * 119.99825 * 179.97438 * 21 20 18 36 36 H 1.08000 * 119.98722 * 180.02562 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9428 0.8296 2.6034 8 14 2.3226 -1.1196 4.0079 9 1 3.8076 -1.1191 4.0077 10 1 1.8280 -0.4193 5.2204 11 1 1.8281 -2.5199 4.0081 12 7 2.0184 -0.6906 -1.1962 13 6 1.6644 -2.0932 -1.4280 14 16 2.9704 0.1142 -2.2863 15 8 2.6904 1.4973 -2.1193 16 8 2.8228 -0.5646 -3.5259 17 6 4.6445 -0.1182 -1.7881 18 6 5.2182 0.7410 -0.8676 19 17 4.2887 2.0478 -0.2027 20 6 6.5339 0.5608 -0.4806 21 6 7.2735 -0.4802 -1.0100 22 6 6.6983 -1.3412 -1.9256 23 6 5.3831 -1.1617 -2.3127 24 7 4.7680 -2.0838 -3.2936 25 8 3.6928 -2.6020 -3.0511 26 8 5.3348 -2.3207 -4.3454 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3632 0.5138 -0.8900 30 1 0.7088 1.1612 3.4844 31 1 2.4157 -2.7377 -0.9718 32 1 0.6905 -2.3002 -0.9847 33 1 1.6237 -2.2852 -2.5002 34 1 6.9833 1.2331 0.2354 35 1 8.3008 -0.6208 -0.7083 36 1 7.2763 -2.1547 -2.3386 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264122736.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:49 Heat of formation + Delta-G solvation = -39.298781 kcal Electronic energy + Delta-G solvation = -28321.383327 eV Core-core repulsion = 24155.934500 eV Total energy + Delta-G solvation = -4165.448827 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -43.39531 -40.65659 -38.66919 -38.01625 -37.78836 -37.57064 -37.12975 -34.51306 -33.43364 -32.60055 -30.91109 -27.91392 -27.32126 -27.00492 -24.93275 -23.86400 -22.61431 -21.10270 -20.08573 -19.81582 -19.00747 -18.82630 -18.42408 -18.30726 -17.27033 -16.89973 -16.75484 -16.26159 -16.17711 -15.31297 -15.20232 -14.81606 -14.63082 -14.16325 -13.72166 -13.69614 -13.58686 -13.48265 -13.25996 -13.07218 -12.96522 -12.85119 -12.73237 -12.71026 -12.52961 -12.33928 -12.26042 -12.15685 -12.08083 -11.83702 -11.66493 -11.18512 -11.01964 -10.48337 -10.40617 -9.72182 -8.06228 -6.19638 -1.37780 -0.91934 -0.69490 -0.24854 0.06985 0.72309 1.43845 1.46944 1.52760 1.66075 1.90497 2.45729 2.46310 2.78910 3.22658 3.30560 3.52611 3.61184 3.64525 3.75871 4.13788 4.24758 4.55944 4.62594 4.78245 4.87686 4.93415 4.98902 5.07563 5.11855 5.18423 5.30352 5.61384 5.71843 5.86479 6.09031 6.30599 6.38250 6.86492 7.48851 8.98190 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.012161 B = 0.006141 C = 0.005522 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2301.806456 B = 4558.510948 C = 5069.677964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.264 3.736 3 H 0.049 0.951 4 C -0.525 4.525 5 H 0.059 0.941 6 C 0.028 3.972 7 N -0.912 5.912 8 Si 0.945 3.055 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.969 5.969 13 C 0.101 3.899 14 S 2.668 3.332 15 O -0.959 6.959 16 O -0.977 6.977 17 C -0.658 4.658 18 C 0.045 3.955 19 Cl -0.010 7.010 20 C -0.088 4.088 21 C -0.020 4.020 22 C -0.074 4.074 23 C 0.042 3.958 24 N 0.014 4.986 25 O -0.137 6.137 26 O -0.143 6.143 27 H 0.045 0.955 28 H 0.075 0.925 29 H 0.020 0.980 30 H 0.263 0.737 31 H 0.053 0.947 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.194 0.806 35 H 0.224 0.776 36 H 0.191 0.809 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.267 -2.866 -3.987 16.037 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.161 3.839 3 H 0.067 0.933 4 C -0.564 4.564 5 H 0.078 0.922 6 C -0.172 4.172 7 N -0.551 5.551 8 Si 0.771 3.229 9 H -0.195 1.195 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.810 5.810 13 C -0.044 4.044 14 S 2.756 3.244 15 O -0.949 6.949 16 O -0.967 6.967 17 C -0.743 4.743 18 C 0.016 3.984 19 Cl 0.020 6.980 20 C -0.106 4.106 21 C -0.038 4.038 22 C -0.094 4.094 23 C -0.040 4.040 24 N 0.538 4.462 25 O -0.357 6.357 26 O -0.363 6.363 27 H 0.064 0.936 28 H 0.094 0.906 29 H 0.039 0.961 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.099 0.901 33 H 0.100 0.900 34 H 0.212 0.788 35 H 0.241 0.759 36 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 15.149 -1.697 -4.012 15.763 hybrid contribution -0.109 -0.556 0.990 1.141 sum 15.040 -2.253 -3.022 15.506 Atomic orbital electron populations 1.22004 0.97685 1.00301 1.00238 1.18746 0.92046 0.92541 0.80566 0.93300 1.21428 1.31672 1.12735 0.90582 0.92243 1.25493 0.95145 0.95461 1.01141 1.69980 1.37106 1.23711 1.24266 0.85812 0.78959 0.78834 0.79264 1.19467 1.21300 1.19924 1.57245 1.61673 1.23079 1.38985 1.21539 1.01769 0.79392 1.01701 1.02613 0.73988 0.73868 0.73905 1.93627 1.83460 1.31495 1.86339 1.93592 1.85981 1.75414 1.41731 1.30587 1.28020 1.04436 1.11302 1.20820 0.94806 0.90358 0.92447 1.98543 1.71656 1.44891 1.82914 1.22190 0.90035 0.99336 0.99075 1.22152 1.02621 0.88966 0.90058 1.21697 0.89376 1.01666 0.96632 1.20587 0.96071 0.92347 0.95014 1.43714 1.00523 1.00608 1.01336 1.94577 1.07346 1.51254 1.82476 1.94472 1.63948 1.65862 1.11970 0.93585 0.90624 0.96114 0.92719 0.92866 0.90092 0.89995 0.78844 0.75919 0.79206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.77 8.95 71.98 0.64 -6.13 16 2 C 0.26 12.76 2.62 44.24 0.12 12.88 16 3 H 0.05 2.56 5.45 -2.39 -0.01 2.55 16 4 C -0.52 -26.08 8.37 25.60 0.21 -25.87 16 5 H 0.06 2.91 7.65 -2.91 -0.02 2.89 16 6 C 0.03 1.41 5.30 84.66 0.45 1.86 16 7 N -0.91 -48.66 11.32 21.45 0.24 -48.42 16 8 Si 0.95 40.09 29.54 68.60 2.03 42.12 16 9 H -0.27 -10.95 7.11 99.48 0.71 -10.24 16 10 H -0.29 -12.17 7.11 99.48 0.71 -11.47 16 11 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 12 N -0.97 -41.74 3.06 -520.47 -1.59 -43.33 16 13 C 0.10 3.84 8.34 127.77 1.07 4.90 16 14 S 2.67 112.44 5.05 -56.49 -0.29 112.16 16 15 O -0.96 -43.96 13.57 -128.00 -1.74 -45.70 16 16 O -0.98 -43.07 12.94 -118.52 -1.53 -44.61 16 17 C -0.66 -23.01 5.97 22.29 0.13 -22.87 16 18 C 0.04 1.38 6.30 22.32 0.14 1.53 16 19 Cl -0.01 -0.36 24.28 -2.72 -0.07 -0.43 16 20 C -0.09 -1.64 9.83 22.29 0.22 -1.42 16 21 C -0.02 -0.24 10.05 22.27 0.22 -0.02 16 22 C -0.07 -1.36 9.83 22.27 0.22 -1.14 16 23 C 0.04 1.27 6.26 36.37 0.23 1.50 16 24 N 0.01 0.49 3.23 -46.48 -0.15 0.34 16 25 O -0.14 -5.19 12.48 26.25 0.33 -4.86 16 26 O -0.14 -4.83 19.14 18.88 0.36 -4.46 16 27 H 0.05 2.03 6.66 -2.39 -0.02 2.01 16 28 H 0.08 3.90 6.07 -2.39 -0.01 3.89 16 29 H 0.02 0.90 8.14 -2.39 -0.02 0.89 16 30 H 0.26 13.51 8.31 -92.71 -0.77 12.73 16 31 H 0.05 1.92 7.74 -2.39 -0.02 1.90 16 32 H 0.08 2.95 6.43 -2.39 -0.02 2.94 16 33 H 0.08 3.01 5.78 -2.39 -0.01 3.00 16 34 H 0.19 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.22 -0.01 8.06 -2.91 -0.02 -0.03 16 36 H 0.19 2.13 8.06 -2.91 -0.02 2.11 16 Total: -1.00 -69.78 324.13 2.39 -67.39 By element: Atomic # 1 Polarization: 3.44 SS G_CDS: 1.15 Total: 4.58 kcal Atomic # 6 Polarization: -38.43 SS G_CDS: 3.65 Total: -34.78 kcal Atomic # 7 Polarization: -89.91 SS G_CDS: -1.50 Total: -91.41 kcal Atomic # 8 Polarization: -97.05 SS G_CDS: -2.58 Total: -99.63 kcal Atomic # 14 Polarization: 40.09 SS G_CDS: 2.03 Total: 42.12 kcal Atomic # 16 Polarization: 112.44 SS G_CDS: -0.29 Total: 112.16 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -0.07 Total: -0.43 kcal Total: -69.78 2.39 -67.39 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264122736.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.090 kcal (2) G-P(sol) polarization free energy of solvation -69.781 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.392 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.389 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds