Wall clock time and date at job start Wed Apr 1 2020 05:30:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34754 * 116.99954 * 2 1 4 4 O 1.21507 * 119.99631 * 0.02562 * 3 2 1 5 5 C 1.47470 * 119.99914 * 180.02562 * 3 2 1 6 6 C 1.39801 * 120.08631 * 180.02562 * 5 3 2 7 7 C 1.37678 * 119.92451 * 180.27519 * 6 5 3 8 8 C 1.38991 * 120.11030 * 359.49219 * 7 6 5 9 9 O 1.35722 * 119.91228 * 180.25630 * 8 7 6 10 10 S 1.52195 * 114.00220 * 270.24723 * 9 8 7 11 11 O 1.42097 * 104.27989 * 191.07307 * 10 9 8 12 12 O 1.42109 * 104.27634 * 318.92946 * 10 9 8 13 13 C 1.81402 * 104.44708 * 74.99873 * 10 9 8 14 14 C 1.53009 * 109.47104 * 180.02562 * 13 10 9 15 15 C 1.50693 * 109.47085 * 180.02562 * 14 13 10 16 16 H 1.08000 * 120.00389 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99672 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00178 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99596 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47321 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47278 * 119.99675 * 19 17 15 22 22 H 1.48507 * 109.46577 * 239.99528 * 19 17 15 23 23 C 1.39096 * 120.17520 * 0.50364 * 8 7 6 24 24 Cl 1.73602 * 119.96073 * 179.73095 * 23 8 7 25 25 C 1.37788 * 120.07046 * 359.75172 * 23 8 7 26 26 H 1.08999 * 109.47036 * 59.99467 * 1 2 3 27 27 H 1.08996 * 109.47155 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46694 * 299.99684 * 1 2 3 29 29 H 1.08002 * 120.03464 * 359.97438 * 6 5 3 30 30 H 1.08005 * 119.94896 * 179.73974 * 7 6 5 31 31 H 1.09001 * 109.47295 * 300.00291 * 13 10 9 32 32 H 1.08994 * 109.47228 * 60.00604 * 13 10 9 33 33 H 1.08994 * 109.47103 * 300.00596 * 14 13 10 34 34 H 1.09004 * 109.46346 * 59.99758 * 14 13 10 35 35 H 0.97002 * 119.99809 * 180.02562 * 18 17 15 36 36 H 1.08008 * 120.04866 * 180.02562 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5365 1.2778 -0.0006 6 6 4.1730 2.5225 0.0000 7 6 5.5481 2.5907 -0.0063 8 6 6.3041 1.4244 -0.0025 9 8 7.6594 1.4963 -0.0034 10 16 8.2766 1.5301 -1.3942 11 8 9.6660 1.3388 -1.1658 12 8 7.5192 0.5844 -2.1368 13 6 7.9553 3.2127 -1.9912 14 6 8.5343 3.3739 -3.3982 15 6 8.2680 4.7718 -3.8939 16 1 7.7383 5.4749 -3.2682 17 6 8.6996 5.1530 -5.1467 18 7 9.3441 4.2968 -5.9088 19 14 8.3700 6.8861 -5.7608 20 1 7.6335 7.6482 -4.7206 21 1 9.6600 7.5625 -6.0501 22 1 7.5541 6.8253 -7.0001 23 6 5.6753 0.1836 -0.0029 24 17 6.6250 -1.2696 -0.0052 25 6 4.2996 0.1068 -0.0020 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 3.5867 3.4295 0.0004 30 1 6.0403 3.5521 -0.0101 31 1 6.8800 3.3893 -2.0187 32 1 8.4246 3.9320 -1.3202 33 1 9.6095 3.1970 -3.3711 34 1 8.0646 2.6544 -4.0690 35 1 9.6481 4.5651 -6.7900 36 1 3.8117 -0.8568 -0.0019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000264738988.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:30 Heat of formation + Delta-G solvation = -167.577847 kcal Electronic energy + Delta-G solvation = -25941.611153 eV Core-core repulsion = 21738.306977 eV Total energy + Delta-G solvation = -4203.304176 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.036 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.47639 -40.67365 -38.34645 -36.95635 -36.84458 -36.62378 -35.75066 -34.02986 -31.85422 -31.21508 -31.13873 -28.10156 -25.82936 -24.92619 -23.54734 -22.18295 -21.55965 -20.54255 -18.65724 -18.35953 -17.88592 -17.48631 -17.06069 -16.74958 -16.43967 -15.59879 -15.45975 -15.25687 -14.63536 -14.49439 -14.34785 -14.05650 -13.67676 -13.49914 -13.35248 -13.14930 -12.60297 -12.52599 -12.43783 -11.92443 -11.90949 -11.78384 -11.75996 -11.66035 -11.33699 -11.20519 -11.15229 -11.06462 -10.93059 -10.50220 -10.47403 -9.83475 -9.60162 -9.31363 -9.14396 -8.56300 -6.18163 -4.24327 -0.27837 0.59675 0.61195 1.68200 1.94401 2.17695 2.28093 3.03781 3.22328 3.29880 3.32745 3.90486 4.00170 4.10216 4.29950 4.32334 4.45000 4.50674 4.65938 4.73505 4.82534 4.99411 5.13552 5.17252 5.26076 5.36163 5.45835 5.48538 5.60548 5.71102 5.90143 6.09450 6.31423 7.20261 7.25689 7.26932 7.74372 8.09182 8.78872 9.41023 10.92826 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.010794 B = 0.003604 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.475824 B = 7767.122669 C = 9666.286133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.353 6.353 3 C 0.515 3.485 4 O -0.496 6.496 5 C -0.109 4.109 6 C -0.030 4.030 7 C -0.129 4.129 8 C 0.127 3.873 9 O -0.668 6.668 10 S 2.562 3.438 11 O -0.926 6.926 12 O -0.947 6.947 13 C -0.612 4.612 14 C 0.031 3.969 15 C -0.522 4.522 16 H 0.063 0.937 17 C 0.059 3.941 18 N -0.889 5.889 19 Si 0.900 3.100 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.032 4.032 24 Cl -0.026 7.026 25 C -0.039 4.039 26 H 0.066 0.934 27 H 0.105 0.895 28 H 0.065 0.935 29 H 0.161 0.839 30 H 0.166 0.834 31 H 0.123 0.877 32 H 0.128 0.872 33 H 0.036 0.964 34 H 0.037 0.963 35 H 0.265 0.735 36 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.274 -8.648 14.913 23.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.269 6.269 3 C 0.359 3.641 4 O -0.384 6.384 5 C -0.112 4.112 6 C -0.048 4.048 7 C -0.148 4.148 8 C 0.084 3.916 9 O -0.626 6.626 10 S 2.662 3.338 11 O -0.924 6.924 12 O -0.945 6.945 13 C -0.743 4.743 14 C -0.008 4.008 15 C -0.561 4.561 16 H 0.081 0.919 17 C -0.144 4.144 18 N -0.527 5.527 19 Si 0.728 3.272 20 H -0.196 1.196 21 H -0.207 1.207 22 H -0.208 1.208 23 C -0.061 4.061 24 Cl 0.004 6.996 25 C -0.057 4.057 26 H 0.085 0.915 27 H 0.123 0.877 28 H 0.084 0.916 29 H 0.179 0.821 30 H 0.183 0.817 31 H 0.142 0.858 32 H 0.147 0.853 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.075 0.925 36 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges -14.950 -9.239 14.980 23.092 hybrid contribution -0.117 1.441 -0.586 1.560 sum -15.067 -7.798 14.394 22.249 Atomic orbital electron populations 1.23347 0.75325 1.04094 1.02899 1.86549 1.24059 1.32152 1.84137 1.20813 0.88491 0.81794 0.72982 1.90882 1.66451 1.35890 1.45185 1.19124 0.89780 0.94207 1.08055 1.21232 0.93210 0.97646 0.92728 1.21432 0.93965 0.97952 1.01496 1.18067 0.78134 0.92999 1.02413 1.85785 1.24806 1.92339 1.59660 1.06569 0.75112 0.79375 0.72732 1.93604 1.30683 1.86061 1.82025 1.93636 1.70962 1.59154 1.70750 1.30763 1.11081 1.19856 1.12595 1.18969 0.96807 1.00168 0.84820 1.21008 1.37871 0.96239 1.01011 0.91859 1.25066 0.94805 0.97896 0.96661 1.69957 1.37583 1.34869 1.10248 0.86404 0.78144 0.83830 0.78859 1.19587 1.20746 1.20754 1.20942 0.92660 0.87970 1.04517 1.98424 1.71448 1.33449 1.96324 1.21281 0.90364 0.99849 0.94248 0.91480 0.87690 0.91613 0.82099 0.81681 0.85839 0.85333 0.94619 0.94523 0.92484 0.81963 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.22 10.57 101.05 1.07 1.28 16 2 O -0.35 -3.10 9.81 -40.64 -0.40 -3.50 16 3 C 0.51 5.40 7.89 34.49 0.27 5.67 16 4 O -0.50 -6.16 16.13 -19.27 -0.31 -6.47 16 5 C -0.11 -1.13 5.87 -104.98 -0.62 -1.75 16 6 C -0.03 -0.29 9.58 -39.20 -0.38 -0.67 16 7 C -0.13 -1.39 8.42 -39.51 -0.33 -1.73 16 8 C 0.13 1.74 4.81 -38.98 -0.19 1.55 16 9 O -0.67 -10.33 9.49 -51.20 -0.49 -10.82 16 10 S 2.56 47.16 5.14 -107.50 -0.55 46.60 16 11 O -0.93 -19.87 18.09 -67.04 -1.21 -21.08 16 12 O -0.95 -18.59 15.16 -67.04 -1.02 -19.61 16 13 C -0.61 -11.25 5.38 37.16 0.20 -11.05 16 14 C 0.03 0.77 4.98 -27.88 -0.14 0.63 16 15 C -0.52 -13.96 9.11 -34.44 -0.31 -14.28 16 16 H 0.06 1.59 7.74 -52.49 -0.41 1.18 16 17 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 18 N -0.89 -25.89 13.29 55.43 0.74 -25.15 16 19 Si 0.90 20.74 29.54 -169.99 -5.02 15.72 16 20 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 H -0.28 -6.44 7.11 56.52 0.40 -6.03 16 23 C -0.03 -0.42 5.65 -39.43 -0.22 -0.64 16 24 Cl -0.03 -0.36 27.23 -51.86 -1.41 -1.77 16 25 C -0.04 -0.40 9.38 -39.17 -0.37 -0.77 16 26 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.16 1.30 7.64 -52.49 -0.40 0.90 16 30 H 0.17 1.40 7.46 -52.48 -0.39 1.00 16 31 H 0.12 1.95 6.57 -51.92 -0.34 1.61 16 32 H 0.13 2.07 8.14 -51.93 -0.42 1.65 16 33 H 0.04 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.04 0.95 8.14 -51.93 -0.42 0.52 16 35 H 0.27 7.23 8.31 -40.82 -0.34 6.89 16 36 H 0.16 1.32 7.60 -52.48 -0.40 0.92 16 LS Contribution 346.47 15.07 5.22 5.22 Total: -1.00 -34.60 346.47 -9.18 -43.78 By element: Atomic # 1 Polarization: 0.92 SS G_CDS: -3.61 Total: -2.69 kcal Atomic # 6 Polarization: -19.12 SS G_CDS: -1.11 Total: -20.24 kcal Atomic # 7 Polarization: -25.89 SS G_CDS: 0.74 Total: -25.15 kcal Atomic # 8 Polarization: -58.05 SS G_CDS: -3.42 Total: -61.48 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 16 Polarization: 47.16 SS G_CDS: -0.55 Total: 46.60 kcal Atomic # 17 Polarization: -0.36 SS G_CDS: -1.41 Total: -1.77 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.60 -9.18 -43.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264738988.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.801 kcal (2) G-P(sol) polarization free energy of solvation -34.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.176 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.578 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds