Wall clock time and date at job start Wed Apr 1 2020 05:30:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34754 * 116.99954 * 2 1 4 4 O 1.21507 * 119.99631 * 0.02562 * 3 2 1 5 5 C 1.47470 * 119.99914 * 180.02562 * 3 2 1 6 6 C 1.39801 * 120.08631 * 180.02562 * 5 3 2 7 7 C 1.37678 * 119.92451 * 180.27519 * 6 5 3 8 8 C 1.38991 * 120.11030 * 359.49219 * 7 6 5 9 9 O 1.35722 * 119.91228 * 180.25630 * 8 7 6 10 10 S 1.52195 * 114.00220 * 270.24723 * 9 8 7 11 11 O 1.42097 * 104.27989 * 191.07307 * 10 9 8 12 12 O 1.42109 * 104.27634 * 318.92946 * 10 9 8 13 13 C 1.81402 * 104.44708 * 74.99873 * 10 9 8 14 14 C 1.53009 * 109.47104 * 180.02562 * 13 10 9 15 15 C 1.50693 * 109.47085 * 180.02562 * 14 13 10 16 16 H 1.08000 * 120.00389 * 359.97438 * 15 14 13 17 17 C 1.37879 * 119.99672 * 180.02562 * 15 14 13 18 18 N 1.31507 * 120.00178 * 359.97438 * 17 15 14 19 19 Si 1.86803 * 119.99596 * 180.02562 * 17 15 14 20 20 H 1.48496 * 109.47321 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47278 * 119.99675 * 19 17 15 22 22 H 1.48507 * 109.46577 * 239.99528 * 19 17 15 23 23 C 1.39096 * 120.17520 * 0.50364 * 8 7 6 24 24 Cl 1.73602 * 119.96073 * 179.73095 * 23 8 7 25 25 C 1.37788 * 120.07046 * 359.75172 * 23 8 7 26 26 H 1.08999 * 109.47036 * 59.99467 * 1 2 3 27 27 H 1.08996 * 109.47155 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.46694 * 299.99684 * 1 2 3 29 29 H 1.08002 * 120.03464 * 359.97438 * 6 5 3 30 30 H 1.08005 * 119.94896 * 179.73974 * 7 6 5 31 31 H 1.09001 * 109.47295 * 300.00291 * 13 10 9 32 32 H 1.08994 * 109.47228 * 60.00604 * 13 10 9 33 33 H 1.08994 * 109.47103 * 300.00596 * 14 13 10 34 34 H 1.09004 * 109.46346 * 59.99758 * 14 13 10 35 35 H 0.97002 * 119.99809 * 180.02562 * 18 17 15 36 36 H 1.08008 * 120.04866 * 180.02562 * 25 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2007 0.0000 4 8 1.4019 2.2197 0.0005 5 6 3.5365 1.2778 -0.0006 6 6 4.1730 2.5225 0.0000 7 6 5.5481 2.5907 -0.0063 8 6 6.3041 1.4244 -0.0025 9 8 7.6594 1.4963 -0.0034 10 16 8.2766 1.5301 -1.3942 11 8 9.6660 1.3388 -1.1658 12 8 7.5192 0.5844 -2.1368 13 6 7.9553 3.2127 -1.9912 14 6 8.5343 3.3739 -3.3982 15 6 8.2680 4.7718 -3.8939 16 1 7.7383 5.4749 -3.2682 17 6 8.6996 5.1530 -5.1467 18 7 9.3441 4.2968 -5.9088 19 14 8.3700 6.8861 -5.7608 20 1 7.6335 7.6482 -4.7206 21 1 9.6600 7.5625 -6.0501 22 1 7.5541 6.8253 -7.0001 23 6 5.6753 0.1836 -0.0029 24 17 6.6250 -1.2696 -0.0052 25 6 4.2996 0.1068 -0.0020 26 1 -0.3633 0.5139 -0.8899 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8901 29 1 3.5867 3.4295 0.0004 30 1 6.0403 3.5521 -0.0101 31 1 6.8800 3.3893 -2.0187 32 1 8.4246 3.9320 -1.3202 33 1 9.6095 3.1970 -3.3711 34 1 8.0646 2.6544 -4.0690 35 1 9.6481 4.5651 -6.7900 36 1 3.8117 -0.8568 -0.0019 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000264738988.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:29 Heat of formation + Delta-G solvation = -190.178218 kcal Electronic energy + Delta-G solvation = -25942.591178 eV Core-core repulsion = 21738.306977 eV Total energy + Delta-G solvation = -4204.284202 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.036 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.51400 -41.53151 -39.29723 -38.39805 -37.85365 -37.49074 -37.27993 -35.94023 -33.28708 -32.54164 -32.04673 -28.67688 -27.71833 -25.85149 -24.51663 -23.70449 -22.69016 -21.67566 -19.73736 -19.46298 -19.14858 -18.63640 -18.41215 -17.91166 -17.46307 -16.74144 -16.65889 -16.54074 -16.41655 -15.38895 -15.27003 -15.12863 -14.88957 -14.58339 -14.40876 -14.30851 -14.07539 -13.78437 -13.74959 -13.41822 -13.28772 -13.05718 -12.96346 -12.84832 -12.69997 -12.67016 -12.32178 -12.28982 -12.12122 -11.83500 -11.81084 -11.74249 -11.14702 -10.64428 -10.46068 -10.15811 -8.24817 -6.38403 -1.38752 -0.62177 -0.24774 0.67960 0.95226 1.12700 1.43798 1.44128 1.52379 1.57114 2.19030 2.38030 2.50361 2.78663 3.09728 3.17401 3.35755 3.48030 3.71365 3.84474 3.88146 3.94085 4.16811 4.31399 4.38529 4.44599 4.56090 4.68695 4.71778 4.76503 4.85169 5.18785 5.20056 5.24193 5.26591 5.69639 6.05399 6.50358 6.75436 7.32027 8.87684 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.010794 B = 0.003604 C = 0.002896 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2593.475824 B = 7767.122669 C = 9666.286133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.519 3.481 4 O -0.517 6.517 5 C -0.106 4.106 6 C -0.023 4.023 7 C -0.121 4.121 8 C 0.090 3.910 9 O -0.659 6.659 10 S 2.582 3.418 11 O -0.965 6.965 12 O -0.965 6.965 13 C -0.606 4.606 14 C 0.023 3.977 15 C -0.536 4.536 16 H 0.082 0.918 17 C -0.003 4.003 18 N -0.934 5.934 19 Si 0.972 3.028 20 H -0.252 1.252 21 H -0.281 1.281 22 H -0.280 1.280 23 C -0.047 4.047 24 Cl -0.042 7.042 25 C -0.031 4.031 26 H 0.065 0.935 27 H 0.134 0.866 28 H 0.069 0.931 29 H 0.184 0.816 30 H 0.192 0.808 31 H 0.154 0.846 32 H 0.155 0.845 33 H 0.007 0.993 34 H 0.013 0.987 35 H 0.267 0.733 36 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.684 -7.187 15.977 24.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.270 6.270 3 C 0.364 3.636 4 O -0.407 6.407 5 C -0.108 4.108 6 C -0.041 4.041 7 C -0.141 4.141 8 C 0.047 3.953 9 O -0.617 6.617 10 S 2.683 3.317 11 O -0.964 6.964 12 O -0.963 6.963 13 C -0.737 4.737 14 C -0.015 4.015 15 C -0.575 4.575 16 H 0.100 0.900 17 C -0.202 4.202 18 N -0.574 5.574 19 Si 0.796 3.204 20 H -0.176 1.176 21 H -0.207 1.207 22 H -0.206 1.206 23 C -0.076 4.076 24 Cl -0.012 7.012 25 C -0.049 4.049 26 H 0.083 0.917 27 H 0.152 0.848 28 H 0.088 0.912 29 H 0.201 0.799 30 H 0.209 0.791 31 H 0.172 0.828 32 H 0.173 0.827 33 H 0.026 0.974 34 H 0.031 0.969 35 H 0.076 0.924 36 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges -17.362 -7.791 16.054 24.897 hybrid contribution 0.443 0.909 -0.830 1.308 sum -16.919 -6.882 15.225 23.778 Atomic orbital electron populations 1.23665 0.73577 1.06145 1.03024 1.86545 1.25755 1.31155 1.83530 1.20777 0.88375 0.81993 0.72452 1.90877 1.66835 1.36633 1.46326 1.19295 0.90011 0.94429 1.07095 1.21531 0.92915 0.98342 0.91306 1.21759 0.94217 0.98044 1.00085 1.18540 0.77201 0.94364 1.05166 1.85737 1.26309 1.92269 1.57370 1.05833 0.74127 0.78969 0.72779 1.93549 1.33246 1.86540 1.83038 1.93598 1.71045 1.59851 1.71822 1.30616 1.12945 1.20867 1.09229 1.18816 0.95358 0.99142 0.88223 1.21541 1.37296 0.97289 1.01337 0.90008 1.26091 0.94600 1.02332 0.97146 1.70103 1.39164 1.37299 1.10796 0.85288 0.78031 0.78554 0.78534 1.17578 1.20693 1.20567 1.21164 0.93491 0.87379 1.05606 1.98416 1.72015 1.34342 1.96467 1.21461 0.89314 1.01016 0.93142 0.91656 0.84771 0.91222 0.79899 0.79063 0.82761 0.82675 0.97420 0.96852 0.92437 0.79944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.27 10.57 113.37 1.20 1.46 16 2 O -0.35 -5.38 9.81 -56.64 -0.56 -5.93 16 3 C 0.52 9.66 7.89 70.26 0.55 10.21 16 4 O -0.52 -11.66 16.13 19.81 0.32 -11.34 16 5 C -0.11 -1.93 5.87 -20.10 -0.12 -2.05 16 6 C -0.02 -0.38 9.58 22.52 0.22 -0.17 16 7 C -0.12 -2.28 8.42 22.32 0.19 -2.09 16 8 C 0.09 2.32 4.81 22.66 0.11 2.43 16 9 O -0.66 -19.81 9.49 -59.54 -0.57 -20.38 16 10 S 2.58 95.04 5.14 -56.49 -0.29 94.75 16 11 O -0.97 -42.44 18.09 -118.57 -2.15 -44.59 16 12 O -0.96 -38.26 15.16 -118.57 -1.80 -40.06 16 13 C -0.61 -21.51 5.38 71.99 0.39 -21.13 16 14 C 0.02 1.17 4.98 29.85 0.15 1.31 16 15 C -0.54 -28.28 9.11 25.60 0.23 -28.04 16 16 H 0.08 3.90 7.74 -2.91 -0.02 3.88 16 17 C 0.00 -0.17 5.46 84.66 0.46 0.29 16 18 N -0.93 -55.52 13.29 21.45 0.28 -55.24 16 19 Si 0.97 41.94 29.54 68.60 2.03 43.97 16 20 H -0.25 -10.01 7.11 99.48 0.71 -9.31 16 21 H -0.28 -12.01 7.11 99.48 0.71 -11.30 16 22 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 23 C -0.05 -1.18 5.65 22.37 0.13 -1.06 16 24 Cl -0.04 -1.14 27.23 -2.72 -0.07 -1.22 16 25 C -0.03 -0.59 9.38 22.53 0.21 -0.38 16 26 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 27 H 0.13 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.07 0.61 8.14 -2.38 -0.02 0.59 16 29 H 0.18 2.27 7.64 -2.91 -0.02 2.25 16 30 H 0.19 2.47 7.46 -2.91 -0.02 2.45 16 31 H 0.15 4.45 6.57 -2.39 -0.02 4.43 16 32 H 0.16 4.65 8.14 -2.39 -0.02 4.63 16 33 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 34 H 0.01 0.71 8.14 -2.38 -0.02 0.69 16 35 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 36 H 0.18 2.60 7.60 -2.91 -0.02 2.58 16 Total: -1.00 -76.06 346.47 2.05 -74.01 By element: Atomic # 1 Polarization: 4.09 SS G_CDS: 1.13 Total: 5.22 kcal Atomic # 6 Polarization: -42.91 SS G_CDS: 3.72 Total: -39.20 kcal Atomic # 7 Polarization: -55.52 SS G_CDS: 0.28 Total: -55.24 kcal Atomic # 8 Polarization: -117.55 SS G_CDS: -4.74 Total: -122.30 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Atomic # 16 Polarization: 95.04 SS G_CDS: -0.29 Total: 94.75 kcal Atomic # 17 Polarization: -1.14 SS G_CDS: -0.07 Total: -1.22 kcal Total: -76.06 2.05 -74.01 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000264738988.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -116.167 kcal (2) G-P(sol) polarization free energy of solvation -76.058 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -192.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.011 kcal (6) G-S(sol) free energy of system = (1) + (5) -190.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds