Wall clock time and date at job start Wed Apr 1 2020 05:19:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46975 * 2 1 4 4 C 1.46499 * 120.00108 * 274.99852 * 3 2 1 5 5 C 1.50700 * 109.46901 * 274.99827 * 4 3 2 6 6 H 1.07992 * 120.00098 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99506 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99832 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00508 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46899 * 89.99745 * 9 7 5 11 11 H 1.48489 * 109.47482 * 209.99611 * 9 7 5 12 12 H 1.48500 * 109.46884 * 329.99993 * 9 7 5 13 13 S 1.65602 * 119.99995 * 94.99626 * 3 2 1 14 14 O 1.42104 * 106.40356 * 336.46299 * 13 3 2 15 15 O 1.42095 * 106.40469 * 203.54037 * 13 3 2 16 16 C 1.76198 * 107.21593 * 89.99905 * 13 3 2 17 17 C 1.38233 * 119.60851 * 149.99990 * 16 13 3 18 18 C 1.38613 * 119.17625 * 180.02562 * 17 16 13 19 19 C 1.38752 * 118.40879 * 0.25567 * 18 17 16 20 20 Br 1.89107 * 120.42763 * 179.75035 * 19 18 17 21 21 C 1.38281 * 119.14439 * 359.51903 * 19 18 17 22 22 N 1.31858 * 119.60926 * 330.02645 * 16 13 3 23 23 H 1.09007 * 109.47038 * 59.99841 * 1 2 3 24 24 H 1.08994 * 109.47339 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47573 * 300.00372 * 1 2 3 26 26 H 1.08996 * 109.47287 * 240.00353 * 2 1 3 27 27 H 1.08994 * 109.46973 * 119.99841 * 2 1 3 28 28 H 1.08999 * 109.47091 * 35.00093 * 4 3 2 29 29 H 1.09002 * 109.46965 * 154.99799 * 4 3 2 30 30 H 0.96995 * 119.99974 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.41515 * 0.02562 * 17 16 13 32 32 H 1.08002 * 120.79267 * 179.97438 * 18 17 16 33 33 H 1.08007 * 119.62545 * 180.20793 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4948 1.7889 -1.8822 6 1 4.1720 1.1112 -1.3838 7 6 3.8525 2.3607 -3.0847 8 7 5.0188 2.0812 -3.6247 9 14 2.6808 3.5324 -3.9472 10 1 2.9452 4.9210 -3.4920 11 1 2.8853 3.4455 -5.4154 12 1 1.2805 3.1622 -3.6196 13 16 2.4120 2.1203 1.4287 14 8 1.6867 1.4415 2.4449 15 8 2.3055 3.5186 1.1999 16 6 4.1168 1.7942 1.7321 17 6 4.8734 2.7131 2.4349 18 6 6.2138 2.4477 2.6680 19 6 6.7473 1.2641 2.1782 20 35 8.5707 0.8478 2.4571 21 6 5.9272 0.3907 1.4877 22 7 4.6558 0.6767 1.2855 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.3617 1.8098 -1.9453 29 1 2.0921 3.1803 -1.0755 30 1 5.2703 2.4832 -4.4708 31 1 4.4258 3.6265 2.7979 32 1 6.8292 3.1475 3.2137 33 1 6.3335 -0.5344 1.1061 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000265440946.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:43 Heat of formation + Delta-G solvation = -28.708745 kcal Electronic energy + Delta-G solvation = -21055.184313 eV Core-core repulsion = 17675.767019 eV Total energy + Delta-G solvation = -3379.417295 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -40.12298 -36.88595 -36.22120 -35.53877 -33.28859 -32.62902 -32.16525 -30.24542 -29.75971 -27.18058 -24.06298 -23.62470 -22.88454 -21.53257 -19.05116 -17.68180 -17.20376 -16.84884 -16.41919 -15.89771 -15.70294 -14.82612 -14.54694 -14.16156 -14.00275 -13.44511 -13.36867 -12.76237 -12.57979 -12.52426 -12.08559 -11.96131 -11.79006 -11.58936 -11.50116 -11.25400 -11.14935 -10.97993 -10.65098 -10.47866 -10.41972 -10.14790 -9.92844 -9.64913 -9.49232 -9.20402 -8.64068 -8.15293 -6.14152 -4.14479 0.41045 0.79494 1.08000 1.29332 3.16692 3.27207 3.33637 3.35658 3.41252 3.94329 4.35694 4.38979 4.59225 4.68804 4.92976 5.04584 5.18551 5.37000 5.39691 5.52289 5.70007 5.73146 5.77480 6.03969 6.25074 6.29214 6.53051 6.64067 6.83055 7.08285 7.33988 7.53950 7.57582 8.42940 8.94725 9.46276 10.98299 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.012039 B = 0.004735 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.176852 B = 5911.682071 C = 7262.155442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.130 3.870 3 N -0.958 5.958 4 C 0.211 3.789 5 C -0.544 4.544 6 H 0.088 0.912 7 C 0.076 3.924 8 N -0.894 5.894 9 Si 0.867 3.133 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.262 1.262 13 S 2.697 3.303 14 O -0.960 6.960 15 O -0.950 6.950 16 C -0.407 4.407 17 C -0.087 4.087 18 C -0.061 4.061 19 C -0.105 4.105 20 Br -0.031 7.031 21 C 0.122 3.878 22 N -0.371 5.371 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.056 0.944 26 H 0.086 0.914 27 H 0.073 0.927 28 H 0.044 0.956 29 H 0.044 0.956 30 H 0.264 0.736 31 H 0.155 0.845 32 H 0.152 0.848 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.323 -2.977 12.885 13.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.004 3.996 3 N -0.797 5.797 4 C 0.088 3.912 5 C -0.582 4.582 6 H 0.106 0.894 7 C -0.128 4.128 8 N -0.532 5.532 9 Si 0.693 3.307 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.187 1.187 13 S 2.781 3.219 14 O -0.950 6.950 15 O -0.939 6.939 16 C -0.625 4.625 17 C -0.109 4.109 18 C -0.089 4.089 19 C -0.187 4.187 20 Br 0.054 6.946 21 C -0.041 4.041 22 N -0.081 5.081 23 H 0.078 0.922 24 H 0.081 0.919 25 H 0.075 0.925 26 H 0.105 0.895 27 H 0.091 0.909 28 H 0.062 0.938 29 H 0.061 0.939 30 H 0.074 0.926 31 H 0.173 0.827 32 H 0.170 0.830 33 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 3.071 -3.201 12.889 13.631 hybrid contribution 0.715 1.103 -0.498 1.406 sum 3.786 -2.098 12.391 13.125 Atomic orbital electron populations 1.22245 0.96801 1.01751 1.02282 1.21098 0.93192 0.81852 1.03422 1.56923 1.76982 1.23635 1.22169 1.19693 0.98616 0.92097 0.80770 1.21558 1.01033 1.29208 1.06449 0.89382 1.24861 0.94961 0.96032 0.96899 1.69895 1.20566 1.43886 1.18840 0.86988 0.82260 0.82241 0.79182 1.19805 1.21044 1.18653 1.02241 0.72891 0.73613 0.73197 1.93575 1.68497 1.75649 1.57249 1.93587 1.85321 1.29616 1.85413 1.34220 1.27187 0.97311 1.03794 1.21864 0.94282 0.99069 0.95718 1.21587 0.95269 0.95057 0.96991 1.23176 0.92899 0.99088 1.03539 1.96752 1.08106 1.94081 1.95624 1.23113 0.89137 0.98732 0.93077 1.67950 1.12165 1.15885 1.12101 0.92222 0.91925 0.92530 0.89537 0.90858 0.93819 0.93854 0.92572 0.82738 0.83033 0.81017 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.50 10.24 37.16 0.38 -2.12 16 2 C 0.13 2.20 6.06 -4.04 -0.02 2.18 16 3 N -0.96 -19.05 2.71 -115.67 -0.31 -19.36 16 4 C 0.21 4.83 4.50 -5.19 -0.02 4.80 16 5 C -0.54 -14.42 9.94 -34.44 -0.34 -14.76 16 6 H 0.09 2.49 8.05 -52.49 -0.42 2.07 16 7 C 0.08 2.09 5.47 -17.82 -0.10 1.99 16 8 N -0.89 -26.28 13.96 55.43 0.77 -25.51 16 9 Si 0.87 20.63 27.47 -169.99 -4.67 15.96 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 12 H -0.26 -5.86 6.54 56.52 0.37 -5.49 16 13 S 2.70 52.04 5.61 -107.50 -0.60 51.43 16 14 O -0.96 -18.59 16.99 -57.17 -0.97 -19.56 16 15 O -0.95 -19.98 16.20 -57.17 -0.93 -20.91 16 16 C -0.41 -7.47 6.77 -17.54 -0.12 -7.58 16 17 C -0.09 -1.36 9.57 -39.44 -0.38 -1.73 16 18 C -0.06 -0.82 9.94 -39.25 -0.39 -1.21 16 19 C -0.11 -1.49 6.25 -39.38 -0.25 -1.74 16 20 Br -0.03 -0.36 33.74 -68.01 -2.29 -2.65 16 21 C 0.12 1.93 10.95 -17.52 -0.19 1.74 16 22 N -0.37 -6.83 10.22 -12.43 -0.13 -6.96 16 23 H 0.06 0.87 8.14 -51.92 -0.42 0.44 16 24 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.09 1.48 8.11 -51.93 -0.42 1.05 16 27 H 0.07 1.15 7.61 -51.93 -0.40 0.76 16 28 H 0.04 0.96 7.17 -51.93 -0.37 0.59 16 29 H 0.04 1.02 6.34 -51.93 -0.33 0.69 16 30 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 31 H 0.15 1.97 7.94 -52.49 -0.42 1.56 16 32 H 0.15 1.51 8.06 -52.49 -0.42 1.08 16 33 H 0.17 2.31 8.06 -52.48 -0.42 1.89 16 LS Contribution 321.39 15.07 4.84 4.84 Total: -1.00 -31.84 321.39 -9.36 -41.20 By element: Atomic # 1 Polarization: 3.58 SS G_CDS: -3.64 Total: -0.06 kcal Atomic # 6 Polarization: -17.00 SS G_CDS: -1.43 Total: -18.43 kcal Atomic # 7 Polarization: -52.16 SS G_CDS: 0.33 Total: -51.83 kcal Atomic # 8 Polarization: -38.57 SS G_CDS: -1.90 Total: -40.47 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -4.67 Total: 15.96 kcal Atomic # 16 Polarization: 52.04 SS G_CDS: -0.60 Total: 51.43 kcal Atomic # 35 Polarization: -0.36 SS G_CDS: -2.29 Total: -2.65 kcal Total LS contribution 4.84 Total: 4.84 kcal Total: -31.84 -9.36 -41.20 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265440946.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.488 kcal (2) G-P(sol) polarization free energy of solvation -31.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.352 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.196 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds