Wall clock time and date at job start Wed Apr 1 2020 05:19:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46504 * 109.46975 * 2 1 4 4 C 1.46499 * 120.00108 * 274.99852 * 3 2 1 5 5 C 1.50700 * 109.46901 * 274.99827 * 4 3 2 6 6 H 1.07992 * 120.00098 * 0.02562 * 5 4 3 7 7 C 1.37878 * 119.99506 * 179.97438 * 5 4 3 8 8 N 1.31522 * 119.99832 * 180.02562 * 7 5 4 9 9 Si 1.86803 * 120.00508 * 0.02562 * 7 5 4 10 10 H 1.48504 * 109.46899 * 89.99745 * 9 7 5 11 11 H 1.48489 * 109.47482 * 209.99611 * 9 7 5 12 12 H 1.48500 * 109.46884 * 329.99993 * 9 7 5 13 13 S 1.65602 * 119.99995 * 94.99626 * 3 2 1 14 14 O 1.42104 * 106.40356 * 336.46299 * 13 3 2 15 15 O 1.42095 * 106.40469 * 203.54037 * 13 3 2 16 16 C 1.76198 * 107.21593 * 89.99905 * 13 3 2 17 17 C 1.38233 * 119.60851 * 149.99990 * 16 13 3 18 18 C 1.38613 * 119.17625 * 180.02562 * 17 16 13 19 19 C 1.38752 * 118.40879 * 0.25567 * 18 17 16 20 20 Br 1.89107 * 120.42763 * 179.75035 * 19 18 17 21 21 C 1.38281 * 119.14439 * 359.51903 * 19 18 17 22 22 N 1.31858 * 119.60926 * 330.02645 * 16 13 3 23 23 H 1.09007 * 109.47038 * 59.99841 * 1 2 3 24 24 H 1.08994 * 109.47339 * 179.97438 * 1 2 3 25 25 H 1.08997 * 109.47573 * 300.00372 * 1 2 3 26 26 H 1.08996 * 109.47287 * 240.00353 * 2 1 3 27 27 H 1.08994 * 109.46973 * 119.99841 * 2 1 3 28 28 H 1.08999 * 109.47091 * 35.00093 * 4 3 2 29 29 H 1.09002 * 109.46965 * 154.99799 * 4 3 2 30 30 H 0.96995 * 119.99974 * 179.97438 * 8 7 5 31 31 H 1.08002 * 120.41515 * 0.02562 * 17 16 13 32 32 H 1.08002 * 120.79267 * 179.97438 * 18 17 16 33 33 H 1.08007 * 119.62545 * 180.20793 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1582 2.1087 -1.2639 5 6 3.4948 1.7889 -1.8822 6 1 4.1720 1.1112 -1.3838 7 6 3.8525 2.3607 -3.0847 8 7 5.0188 2.0812 -3.6247 9 14 2.6808 3.5324 -3.9472 10 1 2.9452 4.9210 -3.4920 11 1 2.8853 3.4455 -5.4154 12 1 1.2805 3.1622 -3.6196 13 16 2.4120 2.1203 1.4287 14 8 1.6867 1.4415 2.4449 15 8 2.3055 3.5186 1.1999 16 6 4.1168 1.7942 1.7321 17 6 4.8734 2.7131 2.4349 18 6 6.2138 2.4477 2.6680 19 6 6.7473 1.2641 2.1782 20 35 8.5707 0.8478 2.4571 21 6 5.9272 0.3907 1.4877 22 7 4.6558 0.6767 1.2855 23 1 -0.3633 0.5139 -0.8900 24 1 -0.3634 -1.0276 -0.0005 25 1 -0.3634 0.5139 0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8933 -0.5138 0.8900 28 1 1.3617 1.8098 -1.9453 29 1 2.0921 3.1803 -1.0755 30 1 5.2703 2.4832 -4.4708 31 1 4.4258 3.6265 2.7979 32 1 6.8292 3.1475 3.2137 33 1 6.3335 -0.5344 1.1061 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000265440946.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:42 Heat of formation + Delta-G solvation = -51.145159 kcal Electronic energy + Delta-G solvation = -21056.157229 eV Core-core repulsion = 17675.767019 eV Total energy + Delta-G solvation = -3380.390211 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -41.33068 -38.42819 -37.78765 -37.09005 -34.63046 -34.45205 -33.34819 -31.78921 -30.89343 -28.93825 -25.27532 -24.90860 -24.48751 -23.11810 -20.44020 -19.19647 -18.85747 -18.57375 -17.80295 -17.27404 -17.06259 -16.28172 -16.06920 -15.72521 -15.40289 -14.75030 -14.55104 -14.51674 -14.13329 -13.80981 -13.70932 -13.53133 -13.34460 -13.16798 -12.78459 -12.63291 -12.60805 -12.54591 -12.19299 -12.07174 -11.72303 -11.62865 -11.55270 -11.08576 -10.83044 -10.73730 -10.36042 -9.77572 -8.24690 -6.28491 -0.84383 -0.65157 -0.08026 0.18962 1.38868 1.41649 1.49356 1.71564 2.15087 2.37691 2.49144 3.08934 3.16787 3.45456 3.52946 3.66098 3.76042 3.97380 4.25693 4.35909 4.47168 4.50863 4.60132 4.75525 4.95010 5.05933 5.07298 5.10444 5.45227 5.46098 5.51125 5.79637 6.32665 6.36230 6.81601 7.35338 8.90502 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.012039 B = 0.004735 C = 0.003855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2325.176852 B = 5911.682071 C = 7262.155442 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.122 3.878 3 N -0.965 5.965 4 C 0.218 3.782 5 C -0.538 4.538 6 H 0.060 0.940 7 C 0.019 3.981 8 N -0.940 5.940 9 Si 0.922 3.078 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.237 1.237 13 S 2.708 3.292 14 O -0.966 6.966 15 O -0.972 6.972 16 C -0.439 4.439 17 C -0.095 4.095 18 C -0.054 4.054 19 C -0.106 4.106 20 Br -0.001 7.001 21 C 0.103 3.897 22 N -0.399 5.399 23 H 0.059 0.941 24 H 0.091 0.909 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.081 0.919 28 H 0.057 0.943 29 H 0.040 0.960 30 H 0.265 0.735 31 H 0.178 0.822 32 H 0.192 0.808 33 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.053 -2.533 13.683 14.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.003 4.003 3 N -0.804 5.804 4 C 0.093 3.907 5 C -0.577 4.577 6 H 0.078 0.922 7 C -0.180 4.180 8 N -0.581 5.581 9 Si 0.746 3.254 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.160 1.160 13 S 2.794 3.206 14 O -0.956 6.956 15 O -0.962 6.962 16 C -0.658 4.658 17 C -0.117 4.117 18 C -0.083 4.083 19 C -0.188 4.188 20 Br 0.084 6.916 21 C -0.059 4.059 22 N -0.109 5.109 23 H 0.078 0.922 24 H 0.109 0.891 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.099 0.901 28 H 0.075 0.925 29 H 0.058 0.942 30 H 0.074 0.926 31 H 0.195 0.805 32 H 0.209 0.791 33 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 2.745 -2.771 13.704 14.249 hybrid contribution 0.987 0.866 -0.631 1.457 sum 3.732 -1.905 13.073 13.728 Atomic orbital electron populations 1.22224 0.94704 1.03625 1.02099 1.21315 0.94946 0.80483 1.03515 1.56906 1.77648 1.24599 1.21206 1.19461 0.96875 0.92231 0.82085 1.21799 1.02094 1.27777 1.06073 0.92180 1.25665 0.96480 0.97902 0.97906 1.70033 1.22703 1.45794 1.19548 0.86084 0.81528 0.79842 0.77956 1.19809 1.20856 1.15965 1.01692 0.73122 0.72940 0.72801 1.93555 1.69298 1.75558 1.57144 1.93549 1.86037 1.30943 1.85661 1.33901 1.26904 0.98747 1.06208 1.22266 0.95187 0.99277 0.94927 1.22071 0.94801 0.95237 0.96154 1.23393 0.94263 0.98856 1.02287 1.96782 1.05439 1.94000 1.95359 1.23457 0.88855 0.99903 0.93719 1.67849 1.13607 1.16418 1.13057 0.92201 0.89074 0.92847 0.90175 0.90104 0.92470 0.94196 0.92639 0.80451 0.79091 0.79614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.60 10.24 71.98 0.74 -3.87 16 2 C 0.12 4.07 6.06 86.38 0.52 4.60 16 3 N -0.96 -38.17 2.71 -519.86 -1.41 -39.57 16 4 C 0.22 9.84 4.50 85.63 0.39 10.22 16 5 C -0.54 -28.85 9.94 25.60 0.25 -28.60 16 6 H 0.06 3.50 8.05 -2.91 -0.02 3.48 16 7 C 0.02 1.06 5.47 84.65 0.46 1.52 16 8 N -0.94 -56.35 13.96 21.45 0.30 -56.05 16 9 Si 0.92 41.99 27.47 68.60 1.88 43.87 16 10 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.24 -9.71 6.54 99.48 0.65 -9.05 16 13 S 2.71 104.15 5.61 -56.49 -0.32 103.84 16 14 O -0.97 -37.08 16.99 -128.00 -2.17 -39.25 16 15 O -0.97 -40.68 16.20 -128.00 -2.07 -42.75 16 16 C -0.44 -16.05 6.77 84.69 0.57 -15.48 16 17 C -0.09 -2.83 9.57 22.36 0.21 -2.61 16 18 C -0.05 -1.36 9.94 22.48 0.22 -1.14 16 19 C -0.11 -2.86 6.25 22.40 0.14 -2.72 16 20 Br 0.00 -0.02 33.74 -20.37 -0.69 -0.71 16 21 C 0.10 3.27 10.95 84.70 0.93 4.20 16 22 N -0.40 -14.85 10.22 -193.23 -1.97 -16.82 16 23 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16 24 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16 25 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 26 H 0.08 2.74 8.11 -2.39 -0.02 2.72 16 27 H 0.08 2.54 7.61 -2.39 -0.02 2.52 16 28 H 0.06 2.42 7.17 -2.39 -0.02 2.40 16 29 H 0.04 1.84 6.34 -2.39 -0.02 1.83 16 30 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16 31 H 0.18 4.26 7.94 -2.91 -0.02 4.24 16 32 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16 33 H 0.19 5.02 8.06 -2.91 -0.02 4.99 16 Total: -1.00 -68.60 321.39 -0.94 -69.54 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 1.07 Total: 11.78 kcal Atomic # 6 Polarization: -38.32 SS G_CDS: 4.44 Total: -33.88 kcal Atomic # 7 Polarization: -109.36 SS G_CDS: -3.08 Total: -112.44 kcal Atomic # 8 Polarization: -77.76 SS G_CDS: -4.25 Total: -82.01 kcal Atomic # 14 Polarization: 41.99 SS G_CDS: 1.88 Total: 43.87 kcal Atomic # 16 Polarization: 104.15 SS G_CDS: -0.32 Total: 103.84 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.69 Total: -0.71 kcal Total: -68.60 -0.94 -69.54 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000265440946.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.397 kcal (2) G-P(sol) polarization free energy of solvation -68.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.207 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds