Wall clock time and date at job start Wed Apr 1 2020 05:19:42
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 N 1.46504 * 109.46975 * 2 1
4 4 C 1.46499 * 120.00108 * 274.99852 * 3 2 1
5 5 C 1.50700 * 109.46901 * 274.99827 * 4 3 2
6 6 H 1.07992 * 120.00098 * 0.02562 * 5 4 3
7 7 C 1.37878 * 119.99506 * 179.97438 * 5 4 3
8 8 N 1.31522 * 119.99832 * 180.02562 * 7 5 4
9 9 Si 1.86803 * 120.00508 * 0.02562 * 7 5 4
10 10 H 1.48504 * 109.46899 * 89.99745 * 9 7 5
11 11 H 1.48489 * 109.47482 * 209.99611 * 9 7 5
12 12 H 1.48500 * 109.46884 * 329.99993 * 9 7 5
13 13 S 1.65602 * 119.99995 * 94.99626 * 3 2 1
14 14 O 1.42104 * 106.40356 * 336.46299 * 13 3 2
15 15 O 1.42095 * 106.40469 * 203.54037 * 13 3 2
16 16 C 1.76198 * 107.21593 * 89.99905 * 13 3 2
17 17 C 1.38233 * 119.60851 * 149.99990 * 16 13 3
18 18 C 1.38613 * 119.17625 * 180.02562 * 17 16 13
19 19 C 1.38752 * 118.40879 * 0.25567 * 18 17 16
20 20 Br 1.89107 * 120.42763 * 179.75035 * 19 18 17
21 21 C 1.38281 * 119.14439 * 359.51903 * 19 18 17
22 22 N 1.31858 * 119.60926 * 330.02645 * 16 13 3
23 23 H 1.09007 * 109.47038 * 59.99841 * 1 2 3
24 24 H 1.08994 * 109.47339 * 179.97438 * 1 2 3
25 25 H 1.08997 * 109.47573 * 300.00372 * 1 2 3
26 26 H 1.08996 * 109.47287 * 240.00353 * 2 1 3
27 27 H 1.08994 * 109.46973 * 119.99841 * 2 1 3
28 28 H 1.08999 * 109.47091 * 35.00093 * 4 3 2
29 29 H 1.09002 * 109.46965 * 154.99799 * 4 3 2
30 30 H 0.96995 * 119.99974 * 179.97438 * 8 7 5
31 31 H 1.08002 * 120.41515 * 0.02562 * 17 16 13
32 32 H 1.08002 * 120.79267 * 179.97438 * 18 17 16
33 33 H 1.08007 * 119.62545 * 180.20793 * 21 19 18
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 7 2.0183 1.3813 0.0000
4 6 2.1582 2.1087 -1.2639
5 6 3.4948 1.7889 -1.8822
6 1 4.1720 1.1112 -1.3838
7 6 3.8525 2.3607 -3.0847
8 7 5.0188 2.0812 -3.6247
9 14 2.6808 3.5324 -3.9472
10 1 2.9452 4.9210 -3.4920
11 1 2.8853 3.4455 -5.4154
12 1 1.2805 3.1622 -3.6196
13 16 2.4120 2.1203 1.4287
14 8 1.6867 1.4415 2.4449
15 8 2.3055 3.5186 1.1999
16 6 4.1168 1.7942 1.7321
17 6 4.8734 2.7131 2.4349
18 6 6.2138 2.4477 2.6680
19 6 6.7473 1.2641 2.1782
20 35 8.5707 0.8478 2.4571
21 6 5.9272 0.3907 1.4877
22 7 4.6558 0.6767 1.2855
23 1 -0.3633 0.5139 -0.8900
24 1 -0.3634 -1.0276 -0.0005
25 1 -0.3634 0.5139 0.8899
26 1 1.8933 -0.5138 -0.8900
27 1 1.8933 -0.5138 0.8900
28 1 1.3617 1.8098 -1.9453
29 1 2.0921 3.1803 -1.0755
30 1 5.2703 2.4832 -4.4708
31 1 4.4258 3.6265 2.7979
32 1 6.8292 3.1475 3.2137
33 1 6.3335 -0.5344 1.1061
RHF calculation, no. of doubly occupied orbitals= 50
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990)
Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000265440946.mol2 33
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:19:42
Heat of formation + Delta-G solvation = -51.145159 kcal
Electronic energy + Delta-G solvation = -21056.157229 eV
Core-core repulsion = 17675.767019 eV
Total energy + Delta-G solvation = -3380.390211 eV
No. of doubly occupied orbitals = 50
Molecular weight
(most abundant/longest-lived isotopes) = 347.993 amu
Computer time = 0.37 seconds
Orbital eigenvalues (eV)
-41.33068 -38.42819 -37.78765 -37.09005 -34.63046 -34.45205 -33.34819 -31.78921
-30.89343 -28.93825 -25.27532 -24.90860 -24.48751 -23.11810 -20.44020 -19.19647
-18.85747 -18.57375 -17.80295 -17.27404 -17.06259 -16.28172 -16.06920 -15.72521
-15.40289 -14.75030 -14.55104 -14.51674 -14.13329 -13.80981 -13.70932 -13.53133
-13.34460 -13.16798 -12.78459 -12.63291 -12.60805 -12.54591 -12.19299 -12.07174
-11.72303 -11.62865 -11.55270 -11.08576 -10.83044 -10.73730 -10.36042 -9.77572
-8.24690 -6.28491 -0.84383 -0.65157 -0.08026 0.18962 1.38868 1.41649
1.49356 1.71564 2.15087 2.37691 2.49144 3.08934 3.16787 3.45456
3.52946 3.66098 3.76042 3.97380 4.25693 4.35909 4.47168 4.50863
4.60132 4.75525 4.95010 5.05933 5.07298 5.10444 5.45227 5.46098
5.51125 5.79637 6.32665 6.36230 6.81601 7.35338 8.90502
Molecular weight = 347.99amu
Principal moments of inertia in cm(-1)
A = 0.012039 B = 0.004735 C = 0.003855
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2325.176852 B = 5911.682071 C = 7262.155442
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.168 4.168
2 C 0.122 3.878
3 N -0.965 5.965
4 C 0.218 3.782
5 C -0.538 4.538
6 H 0.060 0.940
7 C 0.019 3.981
8 N -0.940 5.940
9 Si 0.922 3.078
10 H -0.273 1.273
11 H -0.283 1.283
12 H -0.237 1.237
13 S 2.708 3.292
14 O -0.966 6.966
15 O -0.972 6.972
16 C -0.439 4.439
17 C -0.095 4.095
18 C -0.054 4.054
19 C -0.106 4.106
20 Br -0.001 7.001
21 C 0.103 3.897
22 N -0.399 5.399
23 H 0.059 0.941
24 H 0.091 0.909
25 H 0.052 0.948
26 H 0.080 0.920
27 H 0.081 0.919
28 H 0.057 0.943
29 H 0.040 0.960
30 H 0.265 0.735
31 H 0.178 0.822
32 H 0.192 0.808
33 H 0.187 0.813
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.053 -2.533 13.683 14.247
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.227 4.227
2 C -0.003 4.003
3 N -0.804 5.804
4 C 0.093 3.907
5 C -0.577 4.577
6 H 0.078 0.922
7 C -0.180 4.180
8 N -0.581 5.581
9 Si 0.746 3.254
10 H -0.198 1.198
11 H -0.209 1.209
12 H -0.160 1.160
13 S 2.794 3.206
14 O -0.956 6.956
15 O -0.962 6.962
16 C -0.658 4.658
17 C -0.117 4.117
18 C -0.083 4.083
19 C -0.188 4.188
20 Br 0.084 6.916
21 C -0.059 4.059
22 N -0.109 5.109
23 H 0.078 0.922
24 H 0.109 0.891
25 H 0.072 0.928
26 H 0.098 0.902
27 H 0.099 0.901
28 H 0.075 0.925
29 H 0.058 0.942
30 H 0.074 0.926
31 H 0.195 0.805
32 H 0.209 0.791
33 H 0.204 0.796
Dipole moment (debyes) X Y Z Total
from point charges 2.745 -2.771 13.704 14.249
hybrid contribution 0.987 0.866 -0.631 1.457
sum 3.732 -1.905 13.073 13.728
Atomic orbital electron populations
1.22224 0.94704 1.03625 1.02099 1.21315 0.94946 0.80483 1.03515
1.56906 1.77648 1.24599 1.21206 1.19461 0.96875 0.92231 0.82085
1.21799 1.02094 1.27777 1.06073 0.92180 1.25665 0.96480 0.97902
0.97906 1.70033 1.22703 1.45794 1.19548 0.86084 0.81528 0.79842
0.77956 1.19809 1.20856 1.15965 1.01692 0.73122 0.72940 0.72801
1.93555 1.69298 1.75558 1.57144 1.93549 1.86037 1.30943 1.85661
1.33901 1.26904 0.98747 1.06208 1.22266 0.95187 0.99277 0.94927
1.22071 0.94801 0.95237 0.96154 1.23393 0.94263 0.98856 1.02287
1.96782 1.05439 1.94000 1.95359 1.23457 0.88855 0.99903 0.93719
1.67849 1.13607 1.16418 1.13057 0.92201 0.89074 0.92847 0.90175
0.90104 0.92470 0.94196 0.92639 0.80451 0.79091 0.79614
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.17 -4.60 10.24 71.98 0.74 -3.87 16
2 C 0.12 4.07 6.06 86.38 0.52 4.60 16
3 N -0.96 -38.17 2.71 -519.86 -1.41 -39.57 16
4 C 0.22 9.84 4.50 85.63 0.39 10.22 16
5 C -0.54 -28.85 9.94 25.60 0.25 -28.60 16
6 H 0.06 3.50 8.05 -2.91 -0.02 3.48 16
7 C 0.02 1.06 5.47 84.65 0.46 1.52 16
8 N -0.94 -56.35 13.96 21.45 0.30 -56.05 16
9 Si 0.92 41.99 27.47 68.60 1.88 43.87 16
10 H -0.27 -12.35 7.11 99.48 0.71 -11.65 16
11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16
12 H -0.24 -9.71 6.54 99.48 0.65 -9.05 16
13 S 2.71 104.15 5.61 -56.49 -0.32 103.84 16
14 O -0.97 -37.08 16.99 -128.00 -2.17 -39.25 16
15 O -0.97 -40.68 16.20 -128.00 -2.07 -42.75 16
16 C -0.44 -16.05 6.77 84.69 0.57 -15.48 16
17 C -0.09 -2.83 9.57 22.36 0.21 -2.61 16
18 C -0.05 -1.36 9.94 22.48 0.22 -1.14 16
19 C -0.11 -2.86 6.25 22.40 0.14 -2.72 16
20 Br 0.00 -0.02 33.74 -20.37 -0.69 -0.71 16
21 C 0.10 3.27 10.95 84.70 0.93 4.20 16
22 N -0.40 -14.85 10.22 -193.23 -1.97 -16.82 16
23 H 0.06 1.63 8.14 -2.38 -0.02 1.61 16
24 H 0.09 1.96 8.14 -2.39 -0.02 1.94 16
25 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16
26 H 0.08 2.74 8.11 -2.39 -0.02 2.72 16
27 H 0.08 2.54 7.61 -2.39 -0.02 2.52 16
28 H 0.06 2.42 7.17 -2.39 -0.02 2.40 16
29 H 0.04 1.84 6.34 -2.39 -0.02 1.83 16
30 H 0.26 14.96 8.31 -92.71 -0.77 14.19 16
31 H 0.18 4.26 7.94 -2.91 -0.02 4.24 16
32 H 0.19 3.11 8.06 -2.91 -0.02 3.09 16
33 H 0.19 5.02 8.06 -2.91 -0.02 4.99 16
Total: -1.00 -68.60 321.39 -0.94 -69.54
By element:
Atomic # 1 Polarization: 10.71 SS G_CDS: 1.07 Total: 11.78 kcal
Atomic # 6 Polarization: -38.32 SS G_CDS: 4.44 Total: -33.88 kcal
Atomic # 7 Polarization: -109.36 SS G_CDS: -3.08 Total: -112.44 kcal
Atomic # 8 Polarization: -77.76 SS G_CDS: -4.25 Total: -82.01 kcal
Atomic # 14 Polarization: 41.99 SS G_CDS: 1.88 Total: 43.87 kcal
Atomic # 16 Polarization: 104.15 SS G_CDS: -0.32 Total: 103.84 kcal
Atomic # 35 Polarization: -0.02 SS G_CDS: -0.69 Total: -0.71 kcal
Total: -68.60 -0.94 -69.54 kcal
The number of atoms in the molecule is 33
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000265440946.mol2 33
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 18.397 kcal
(2) G-P(sol) polarization free energy of solvation -68.605 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.207 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.938 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.542 kcal
(6) G-S(sol) free energy of system = (1) + (5) -51.145 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.37 seconds