Wall clock time and date at job start Wed Apr 1 2020 05:34:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99594 * 2 1 4 4 H 1.48498 * 109.46719 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47087 * 299.99739 * 3 2 1 6 6 H 1.48502 * 109.47302 * 59.99882 * 3 2 1 7 7 C 1.37865 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00151 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00347 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47373 * 179.97438 * 9 7 2 11 11 S 1.81406 * 109.47078 * 180.02562 * 10 9 7 12 12 O 1.42097 * 110.54242 * 68.37978 * 11 10 9 13 13 O 1.42100 * 110.54304 * 291.62695 * 11 10 9 14 14 N 1.65596 * 104.44797 * 180.02562 * 11 10 9 15 15 C 1.46505 * 119.99941 * 65.00238 * 14 11 10 16 16 C 1.50703 * 109.47064 * 164.99860 * 15 14 11 17 17 C 1.38231 * 120.00771 * 104.71992 * 16 15 14 18 18 C 1.38219 * 120.01459 * 179.76516 * 17 16 15 19 19 N 1.48021 * 119.98851 * 180.25540 * 18 17 16 20 20 O 1.21797 * 120.00039 * 180.25824 * 19 18 17 21 21 O 1.21800 * 120.00142 * 0.25619 * 19 18 17 22 22 C 1.38265 * 120.02448 * 0.51589 * 18 17 16 23 23 C 1.38192 * 120.01381 * 359.74102 * 22 18 17 24 24 C 1.38328 * 120.00556 * 284.99744 * 16 15 14 25 25 Cl 1.73599 * 120.01478 * 359.97438 * 24 16 15 26 26 H 0.97001 * 120.00561 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46718 * 60.00289 * 9 7 2 28 28 H 1.08996 * 109.47439 * 300.00201 * 9 7 2 29 29 H 1.09004 * 109.46523 * 60.00708 * 10 9 7 30 30 H 1.08991 * 109.47592 * 300.00265 * 10 9 7 31 31 H 0.96997 * 120.00145 * 244.99357 * 14 11 10 32 32 H 1.09002 * 109.47068 * 284.99828 * 15 14 11 33 33 H 1.09001 * 109.47372 * 44.99916 * 15 14 11 34 34 H 1.07997 * 119.99478 * 0.02562 * 17 16 15 35 35 H 1.08004 * 119.99377 * 179.72009 * 22 18 17 36 36 H 1.07997 * 120.00692 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 16 1.3384 -5.2330 0.0021 12 8 0.6640 -5.4199 -1.2346 13 8 0.6650 -5.4195 1.2394 14 7 2.5207 -6.3926 0.0025 15 6 3.4191 -6.5223 1.1524 16 6 4.1392 -7.8442 1.0807 17 6 5.4666 -7.8884 0.6975 18 6 6.1286 -9.1002 0.6363 19 7 7.5516 -9.1463 0.2314 20 8 8.1338 -10.2145 0.1729 21 8 8.1403 -8.1160 -0.0433 22 6 5.4606 -10.2700 0.9480 23 6 4.1320 -10.2276 1.3261 24 6 3.4704 -9.0141 1.3927 25 17 1.8015 -8.9601 1.8677 26 1 -0.4851 0.8400 -0.0004 27 1 0.6242 -2.5574 -0.8881 28 1 0.6248 -2.5563 0.8919 29 1 2.8726 -3.6038 0.8911 30 1 2.8714 -3.6046 -0.8889 31 1 2.6182 -6.9860 -0.7586 32 1 4.1468 -5.7109 1.1383 33 1 2.8390 -6.4741 2.0740 34 1 5.9878 -6.9755 0.4499 35 1 5.9770 -11.2171 0.8957 36 1 3.6102 -11.1414 1.5691 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000268275394.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:04 Heat of formation + Delta-G solvation = -63.377255 kcal Electronic energy + Delta-G solvation = -25204.808624 eV Core-core repulsion = 21038.315675 eV Total energy + Delta-G solvation = -4166.492948 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.59447 -40.36605 -37.17750 -36.96405 -36.74341 -35.89194 -35.51542 -33.96345 -32.31683 -31.91997 -31.23543 -26.98856 -26.45558 -25.67594 -23.44711 -22.34177 -21.75368 -19.60204 -19.13399 -19.04644 -17.92274 -17.65500 -17.55547 -16.76739 -16.65390 -16.25028 -15.52163 -15.20930 -14.87250 -14.61245 -14.37960 -14.01457 -13.78991 -13.43499 -13.24356 -12.61876 -12.56573 -12.37663 -11.97856 -11.85501 -11.82781 -11.70632 -11.62707 -11.59300 -11.50474 -11.34418 -11.13855 -11.02440 -10.48139 -10.45884 -10.07673 -9.94043 -9.84423 -9.63307 -9.14081 -8.55665 -6.17568 -4.23536 -0.76407 0.11243 0.64280 0.77791 0.88693 1.37449 2.43955 3.04365 3.22332 3.30014 3.33077 3.55395 3.71963 3.97281 4.09622 4.13560 4.32975 4.35713 4.55584 4.71215 4.81926 4.92995 5.05862 5.07014 5.17960 5.32783 5.39100 5.48927 5.55439 5.71578 5.93257 6.39052 6.82009 7.21699 7.23057 7.28587 7.75422 8.11194 8.80206 9.41913 10.93444 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.013084 B = 0.002795 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.495901 B =10014.687897 C =11706.911696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.058 3.942 3 Si 0.900 3.100 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.521 4.521 8 H 0.063 0.937 9 C 0.027 3.973 10 C -0.589 4.589 11 S 2.589 3.411 12 O -0.962 6.962 13 O -0.959 6.959 14 N -1.124 6.124 15 C 0.154 3.846 16 C -0.085 4.085 17 C -0.026 4.026 18 C -0.046 4.046 19 N 0.028 4.972 20 O -0.158 6.158 21 O -0.151 6.151 22 C -0.039 4.039 23 C -0.111 4.111 24 C 0.021 3.979 25 Cl -0.015 7.015 26 H 0.265 0.735 27 H 0.033 0.967 28 H 0.034 0.966 29 H 0.120 0.880 30 H 0.122 0.878 31 H 0.414 0.586 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.168 0.832 35 H 0.163 0.837 36 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.315 -22.222 3.755 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.727 3.273 4 H -0.196 1.196 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.561 4.561 8 H 0.081 0.919 9 C -0.012 4.012 10 C -0.722 4.722 11 S 2.687 3.313 12 O -0.952 6.952 13 O -0.949 6.949 14 N -0.881 5.881 15 C 0.028 3.972 16 C -0.089 4.089 17 C -0.046 4.046 18 C -0.129 4.129 19 N 0.549 4.451 20 O -0.373 6.373 21 O -0.368 6.368 22 C -0.059 4.059 23 C -0.130 4.130 24 C -0.007 4.007 25 Cl 0.014 6.986 26 H 0.075 0.925 27 H 0.052 0.948 28 H 0.053 0.947 29 H 0.138 0.862 30 H 0.141 0.859 31 H 0.247 0.753 32 H 0.106 0.894 33 H 0.121 0.879 34 H 0.185 0.815 35 H 0.181 0.819 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 8.336 -22.168 4.170 24.048 hybrid contribution 1.367 0.897 -0.412 1.686 sum 9.703 -21.272 3.758 23.680 Atomic orbital electron populations 1.69959 1.06137 1.27176 1.49535 1.25068 0.94974 0.99598 0.94832 0.86415 0.79956 0.83124 0.77806 1.19585 1.20773 1.20770 1.21029 0.93115 0.89695 1.52214 0.91926 1.18976 0.92679 0.90544 0.98956 1.30454 1.13768 1.17804 1.10200 1.05758 0.74635 0.76597 0.74337 1.93569 1.71198 1.85271 1.45211 1.93551 1.71062 1.84855 1.45451 1.55921 1.52791 1.52792 1.26580 1.20232 0.93290 0.92659 0.91034 1.19756 0.92895 0.95411 1.00790 1.21003 0.93148 0.97648 0.92831 1.21150 0.82590 0.96978 1.12166 1.43532 1.02866 1.00600 0.98147 1.94552 1.67920 1.18314 1.56545 1.94589 1.67349 1.23528 1.51340 1.21051 0.93791 0.97990 0.93021 1.21140 0.93318 0.97794 1.00783 1.21448 0.88463 0.94409 0.96373 1.98494 1.12553 1.98629 1.88886 0.92529 0.94830 0.94748 0.86192 0.85933 0.75282 0.89353 0.87858 0.81472 0.81930 0.82222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.97 13.29 55.43 0.74 -25.24 16 2 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 20.77 29.54 -169.99 -5.02 15.75 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.52 -13.96 9.11 -34.44 -0.31 -14.27 16 8 H 0.06 1.58 7.74 -52.48 -0.41 1.18 16 9 C 0.03 0.67 4.98 -27.88 -0.14 0.53 16 10 C -0.59 -10.29 6.01 37.16 0.22 -10.06 16 11 S 2.59 41.82 5.46 -107.50 -0.59 41.23 16 12 O -0.96 -18.73 18.08 -57.54 -1.04 -19.77 16 13 O -0.96 -17.90 17.49 -57.54 -1.01 -18.90 16 14 N -1.12 -12.22 5.77 -11.65 -0.07 -12.29 16 15 C 0.15 1.35 5.59 -5.19 -0.03 1.33 16 16 C -0.09 -0.65 5.28 -104.59 -0.55 -1.20 16 17 C -0.03 -0.19 9.18 -39.59 -0.36 -0.55 16 18 C -0.05 -0.36 6.85 -79.94 -0.55 -0.91 16 19 N 0.03 0.29 4.45 33.96 0.15 0.44 16 20 O -0.16 -1.71 18.45 -29.46 -0.54 -2.25 16 21 O -0.15 -1.73 18.45 -29.46 -0.54 -2.27 16 22 C -0.04 -0.23 9.55 -39.59 -0.38 -0.60 16 23 C -0.11 -0.59 9.83 -39.55 -0.39 -0.98 16 24 C 0.02 0.16 6.31 -39.50 -0.25 -0.09 16 25 Cl -0.02 -0.14 27.55 -51.86 -1.43 -1.57 16 26 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 27 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 28 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 29 H 0.12 1.80 8.14 -51.92 -0.42 1.37 16 30 H 0.12 1.92 8.14 -51.93 -0.42 1.49 16 31 H 0.41 3.80 8.61 -34.47 -0.30 3.51 16 32 H 0.09 0.58 7.95 -51.93 -0.41 0.17 16 33 H 0.10 0.97 7.14 -51.93 -0.37 0.60 16 34 H 0.17 1.03 7.55 -52.49 -0.40 0.63 16 35 H 0.16 0.66 7.61 -52.48 -0.40 0.26 16 36 H 0.16 0.46 8.06 -52.49 -0.42 0.04 16 LS Contribution 353.55 15.07 5.33 5.33 Total: -1.00 -35.17 353.55 -10.39 -45.56 By element: Atomic # 1 Polarization: 2.82 SS G_CDS: -3.53 Total: -0.71 kcal Atomic # 6 Polarization: -22.47 SS G_CDS: -2.84 Total: -25.31 kcal Atomic # 7 Polarization: -37.91 SS G_CDS: 0.82 Total: -37.08 kcal Atomic # 8 Polarization: -40.07 SS G_CDS: -3.13 Total: -43.20 kcal Atomic # 14 Polarization: 20.77 SS G_CDS: -5.02 Total: 15.75 kcal Atomic # 16 Polarization: 41.82 SS G_CDS: -0.59 Total: 41.23 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -1.43 Total: -1.57 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.17 -10.39 -45.56 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268275394.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.815 kcal (2) G-P(sol) polarization free energy of solvation -35.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds