Wall clock time and date at job start Wed Apr 1 2020 05:34:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86807 * 119.99594 * 2 1 4 4 H 1.48498 * 109.46719 * 180.02562 * 3 2 1 5 5 H 1.48506 * 109.47087 * 299.99739 * 3 2 1 6 6 H 1.48502 * 109.47302 * 59.99882 * 3 2 1 7 7 C 1.37865 * 120.00193 * 179.97438 * 2 1 3 8 8 H 1.08007 * 120.00151 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00347 * 359.97438 * 7 2 1 10 10 C 1.52999 * 109.47373 * 179.97438 * 9 7 2 11 11 S 1.81406 * 109.47078 * 180.02562 * 10 9 7 12 12 O 1.42097 * 110.54242 * 68.37978 * 11 10 9 13 13 O 1.42100 * 110.54304 * 291.62695 * 11 10 9 14 14 N 1.65596 * 104.44797 * 180.02562 * 11 10 9 15 15 C 1.46505 * 119.99941 * 65.00238 * 14 11 10 16 16 C 1.50703 * 109.47064 * 164.99860 * 15 14 11 17 17 C 1.38231 * 120.00771 * 104.71992 * 16 15 14 18 18 C 1.38219 * 120.01459 * 179.76516 * 17 16 15 19 19 N 1.48021 * 119.98851 * 180.25540 * 18 17 16 20 20 O 1.21797 * 120.00039 * 180.25824 * 19 18 17 21 21 O 1.21800 * 120.00142 * 0.25619 * 19 18 17 22 22 C 1.38265 * 120.02448 * 0.51589 * 18 17 16 23 23 C 1.38192 * 120.01381 * 359.74102 * 22 18 17 24 24 C 1.38328 * 120.00556 * 284.99744 * 16 15 14 25 25 Cl 1.73599 * 120.01478 * 359.97438 * 24 16 15 26 26 H 0.97001 * 120.00561 * 0.02562 * 1 2 3 27 27 H 1.09004 * 109.46718 * 60.00289 * 9 7 2 28 28 H 1.08996 * 109.47439 * 300.00201 * 9 7 2 29 29 H 1.09004 * 109.46523 * 60.00708 * 10 9 7 30 30 H 1.08991 * 109.47592 * 300.00265 * 10 9 7 31 31 H 0.96997 * 120.00145 * 244.99357 * 14 11 10 32 32 H 1.09002 * 109.47068 * 284.99828 * 15 14 11 33 33 H 1.09001 * 109.47372 * 44.99916 * 15 14 11 34 34 H 1.07997 * 119.99478 * 0.02562 * 17 16 15 35 35 H 1.08004 * 119.99377 * 179.72009 * 22 18 17 36 36 H 1.07997 * 120.00692 * 179.97438 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 3.7090 1.3465 -0.0006 5 1 1.8903 2.3965 -1.2126 6 1 1.8902 2.3966 1.2125 7 6 2.0045 -1.1939 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2511 -2.4991 0.0017 10 6 2.2454 -3.6620 0.0015 11 16 1.3384 -5.2330 0.0021 12 8 0.6640 -5.4199 -1.2346 13 8 0.6650 -5.4195 1.2394 14 7 2.5207 -6.3926 0.0025 15 6 3.4191 -6.5223 1.1524 16 6 4.1392 -7.8442 1.0807 17 6 5.4666 -7.8884 0.6975 18 6 6.1286 -9.1002 0.6363 19 7 7.5516 -9.1463 0.2314 20 8 8.1338 -10.2145 0.1729 21 8 8.1403 -8.1160 -0.0433 22 6 5.4606 -10.2700 0.9480 23 6 4.1320 -10.2276 1.3261 24 6 3.4704 -9.0141 1.3927 25 17 1.8015 -8.9601 1.8677 26 1 -0.4851 0.8400 -0.0004 27 1 0.6242 -2.5574 -0.8881 28 1 0.6248 -2.5563 0.8919 29 1 2.8726 -3.6038 0.8911 30 1 2.8714 -3.6046 -0.8889 31 1 2.6182 -6.9860 -0.7586 32 1 4.1468 -5.7109 1.1383 33 1 2.8390 -6.4741 2.0740 34 1 5.9878 -6.9755 0.4499 35 1 5.9770 -11.2171 0.8957 36 1 3.6102 -11.1414 1.5691 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000268275394.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:03 Heat of formation + Delta-G solvation = -87.776976 kcal Electronic energy + Delta-G solvation = -25205.866675 eV Core-core repulsion = 21038.315675 eV Total energy + Delta-G solvation = -4167.551000 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.31320 -40.95348 -38.16758 -37.81323 -37.72992 -37.03456 -36.63335 -35.88151 -33.11327 -32.88870 -32.61156 -27.68859 -27.57815 -27.15995 -24.00534 -23.58732 -22.99184 -20.44752 -20.20489 -19.79815 -19.10643 -18.64297 -18.32530 -18.11297 -17.50363 -17.28009 -16.91269 -16.52190 -16.13938 -15.67382 -15.15340 -15.02327 -14.60319 -14.46515 -14.35804 -13.93224 -13.70091 -13.36187 -13.18301 -13.08835 -13.01261 -12.94878 -12.86269 -12.76637 -12.75910 -12.35780 -12.32285 -12.23770 -12.10484 -12.02441 -11.72624 -11.19383 -10.64984 -10.62722 -10.49051 -10.37843 -8.25576 -6.39078 -1.43563 -0.75893 -0.30471 0.06222 0.22670 0.77153 1.42038 1.42451 1.55500 1.73741 2.06791 2.38597 2.79226 2.98056 3.08577 3.24074 3.28924 3.43347 3.56834 3.83289 3.98978 4.09393 4.16122 4.31029 4.41287 4.49998 4.57646 4.65168 4.75431 4.79917 4.96303 5.23581 5.29286 5.30926 5.69968 5.99202 6.07440 6.40148 6.75603 7.31499 8.86828 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.013084 B = 0.002795 C = 0.002391 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2139.495901 B =10014.687897 C =11706.911696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C -0.004 4.004 3 Si 0.971 3.029 4 H -0.254 1.254 5 H -0.280 1.280 6 H -0.279 1.279 7 C -0.536 4.536 8 H 0.078 0.922 9 C 0.018 3.982 10 C -0.589 4.589 11 S 2.619 3.381 12 O -0.998 6.998 13 O -0.986 6.986 14 N -1.106 6.106 15 C 0.142 3.858 16 C -0.087 4.087 17 C -0.021 4.021 18 C -0.057 4.057 19 N 0.030 4.970 20 O -0.163 6.163 21 O -0.182 6.182 22 C -0.026 4.026 23 C -0.098 4.098 24 C 0.018 3.982 25 Cl -0.035 7.035 26 H 0.267 0.733 27 H 0.004 0.996 28 H 0.009 0.991 29 H 0.149 0.851 30 H 0.144 0.856 31 H 0.425 0.575 32 H 0.117 0.883 33 H 0.098 0.902 34 H 0.177 0.823 35 H 0.184 0.816 36 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.355 -23.338 4.108 26.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.203 4.203 3 Si 0.795 3.205 4 H -0.178 1.178 5 H -0.206 1.206 6 H -0.205 1.205 7 C -0.575 4.575 8 H 0.096 0.904 9 C -0.020 4.020 10 C -0.721 4.721 11 S 2.715 3.285 12 O -0.989 6.989 13 O -0.976 6.976 14 N -0.867 5.867 15 C 0.017 3.983 16 C -0.090 4.090 17 C -0.041 4.041 18 C -0.141 4.141 19 N 0.547 4.453 20 O -0.380 6.380 21 O -0.394 6.394 22 C -0.046 4.046 23 C -0.117 4.117 24 C -0.010 4.010 25 Cl -0.005 7.005 26 H 0.075 0.925 27 H 0.022 0.978 28 H 0.027 0.973 29 H 0.167 0.833 30 H 0.162 0.838 31 H 0.261 0.739 32 H 0.135 0.865 33 H 0.116 0.884 34 H 0.195 0.805 35 H 0.201 0.799 36 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 10.411 -23.252 4.510 25.872 hybrid contribution 0.737 1.079 -0.485 1.394 sum 11.148 -22.173 4.025 25.142 Atomic orbital electron populations 1.70102 1.08065 1.28207 1.51116 1.26094 0.95812 1.03840 0.94510 0.85300 0.79305 0.78191 0.77678 1.17770 1.20625 1.20467 1.21571 0.94085 0.90751 1.51120 0.90397 1.18828 0.93686 0.93130 0.96393 1.30357 1.12830 1.16171 1.12775 1.04548 0.74593 0.76429 0.72887 1.93516 1.72788 1.85809 1.46739 1.93517 1.72281 1.85240 1.46513 1.55352 1.52265 1.51192 1.27863 1.20525 0.93466 0.94640 0.89694 1.19533 0.92862 0.94811 1.01841 1.21051 0.92854 0.97973 0.92187 1.21284 0.81242 0.98105 1.13432 1.43825 1.03709 1.00194 0.97619 1.94532 1.68683 1.18334 1.56495 1.94585 1.68301 1.23714 1.52773 1.21335 0.93726 0.98150 0.91353 1.21403 0.92902 0.98067 0.99355 1.21611 0.87586 0.95268 0.96537 1.98497 1.14165 1.98684 1.89147 0.92460 0.97761 0.97289 0.83317 0.83767 0.73881 0.86526 0.88377 0.80545 0.79869 0.79449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.01 13.29 21.44 0.28 -55.72 16 2 C 0.00 -0.24 5.46 84.65 0.46 0.23 16 3 Si 0.97 42.42 29.54 68.60 2.03 44.44 16 4 H -0.25 -10.29 7.11 99.48 0.71 -9.58 16 5 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 6 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 7 C -0.54 -28.69 9.11 25.60 0.23 -28.46 16 8 H 0.08 3.82 7.74 -2.91 -0.02 3.79 16 9 C 0.02 0.93 4.98 29.85 0.15 1.07 16 10 C -0.59 -19.99 6.01 71.98 0.43 -19.55 16 11 S 2.62 83.34 5.46 -56.49 -0.31 83.03 16 12 O -1.00 -39.08 18.08 -127.65 -2.31 -41.39 16 13 O -0.99 -36.78 17.49 -127.65 -2.23 -39.01 16 14 N -1.11 -22.01 5.77 -190.77 -1.10 -23.11 16 15 C 0.14 2.16 5.59 85.63 0.48 2.64 16 16 C -0.09 -1.10 5.28 -19.84 -0.10 -1.20 16 17 C -0.02 -0.25 9.18 22.26 0.20 -0.04 16 18 C -0.06 -0.77 6.85 36.38 0.25 -0.52 16 19 N 0.03 0.57 4.45 -46.45 -0.21 0.36 16 20 O -0.16 -3.29 18.45 18.89 0.35 -2.94 16 21 O -0.18 -4.03 18.45 18.89 0.35 -3.68 16 22 C -0.03 -0.22 9.55 22.27 0.21 -0.01 16 23 C -0.10 -0.71 9.83 22.29 0.22 -0.49 16 24 C 0.02 0.22 6.31 22.32 0.14 0.36 16 25 Cl -0.03 -0.58 27.55 -2.72 -0.07 -0.66 16 26 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 27 H 0.00 0.22 8.14 -2.38 -0.02 0.20 16 28 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 29 H 0.15 4.12 8.14 -2.39 -0.02 4.10 16 30 H 0.14 4.23 8.14 -2.40 -0.02 4.21 16 31 H 0.43 6.94 8.61 -96.75 -0.83 6.11 16 32 H 0.12 1.14 7.95 -2.39 -0.02 1.12 16 33 H 0.10 1.66 7.14 -2.39 -0.02 1.64 16 34 H 0.18 1.74 7.55 -2.91 -0.02 1.72 16 35 H 0.18 0.80 7.61 -2.91 -0.02 0.78 16 36 H 0.19 0.33 8.06 -2.91 -0.02 0.30 16 Total: -1.00 -78.04 353.55 -0.23 -78.27 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 0.31 Total: 6.38 kcal Atomic # 6 Polarization: -48.66 SS G_CDS: 2.68 Total: -45.98 kcal Atomic # 7 Polarization: -77.44 SS G_CDS: -1.02 Total: -78.47 kcal Atomic # 8 Polarization: -83.18 SS G_CDS: -3.84 Total: -87.02 kcal Atomic # 14 Polarization: 42.42 SS G_CDS: 2.03 Total: 44.44 kcal Atomic # 16 Polarization: 83.34 SS G_CDS: -0.31 Total: 83.03 kcal Atomic # 17 Polarization: -0.58 SS G_CDS: -0.07 Total: -0.66 kcal Total: -78.04 -0.23 -78.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000268275394.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -9.504 kcal (2) G-P(sol) polarization free energy of solvation -78.039 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.273 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds