Wall clock time and date at job start Wed Apr 1 2020 05:14:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99551 * 2 1 4 4 H 1.48498 * 109.47139 * 269.99270 * 3 2 1 5 5 H 1.48496 * 109.47263 * 29.99900 * 3 2 1 6 6 H 1.48504 * 109.46756 * 149.99565 * 3 2 1 7 7 C 1.37871 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00100 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99921 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47124 * 180.02562 * 9 7 2 11 11 C 1.46504 * 120.00320 * 85.00119 * 10 9 7 12 12 C 1.50707 * 109.46935 * 275.00488 * 11 10 9 13 13 C 1.38227 * 119.62059 * 95.01845 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.74122 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61137 * 274.99275 * 12 11 10 18 18 S 1.65598 * 120.00244 * 265.00133 * 10 9 7 19 19 O 1.42101 * 104.27756 * 26.07487 * 18 10 9 20 20 O 1.42101 * 104.28189 * 153.92741 * 18 10 9 21 21 C 1.81399 * 104.45060 * 270.00103 * 18 10 9 22 22 Br 1.96600 * 109.47060 * 171.62309 * 21 18 10 23 23 H 0.96996 * 120.00260 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46561 * 60.00417 * 9 7 2 25 25 H 1.08992 * 109.46855 * 300.00268 * 9 7 2 26 26 H 1.08997 * 109.47679 * 154.99955 * 11 10 9 27 27 H 1.09003 * 109.46652 * 34.99915 * 11 10 9 28 28 H 1.07998 * 120.41916 * 359.95342 * 13 12 11 29 29 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 30 30 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 31 31 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 32 32 H 1.08994 * 109.47035 * 291.61962 * 21 18 10 33 33 H 1.08998 * 109.46762 * 51.62248 * 21 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 4.1404 -3.3024 -1.2630 12 6 2.8182 -3.9224 -1.6354 13 6 1.9672 -3.2524 -2.4942 14 6 0.7558 -3.8341 -2.8346 15 6 0.4397 -5.0687 -2.2881 16 6 1.3410 -5.6789 -1.4367 17 7 2.4869 -5.0980 -1.1385 18 16 4.3932 -3.3145 1.4296 19 8 3.6014 -2.6442 2.4007 20 8 4.2145 -4.6998 1.1682 21 6 6.1506 -2.9332 1.6679 22 35 6.7105 -3.5159 3.4601 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8912 25 1 3.8752 -0.6803 -0.8888 26 1 4.8901 -4.0856 -1.1503 27 1 4.4514 -2.6117 -2.0469 28 1 2.2441 -2.2897 -2.8977 29 1 0.0725 -3.3355 -3.5063 30 1 -0.4970 -5.5496 -2.5285 31 1 1.1042 -6.6424 -1.0102 32 1 6.7410 -3.4555 0.9151 33 1 6.3057 -1.8588 1.5702 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000271463619.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:01 Heat of formation + Delta-G solvation = -13.651466 kcal Electronic energy + Delta-G solvation = -21234.653903 eV Core-core repulsion = 17855.889541 eV Total energy + Delta-G solvation = -3378.764362 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.60364 -36.63579 -36.06257 -35.35506 -32.62760 -31.97895 -31.81648 -31.03399 -28.22340 -27.27610 -25.51425 -22.94241 -22.14203 -21.43807 -18.40054 -17.26735 -17.12476 -16.27847 -15.97289 -15.93063 -15.44096 -14.95834 -14.65323 -14.02429 -13.53072 -13.30609 -13.27798 -12.91832 -12.66917 -12.40858 -12.37276 -11.83419 -11.71123 -11.52160 -11.40167 -11.29134 -11.15915 -10.68421 -10.60319 -10.32966 -10.24644 -10.04330 -9.59456 -9.23411 -8.89000 -8.64695 -8.46777 -8.20995 -6.10247 -4.08975 0.40423 1.07002 1.66745 1.92366 3.18336 3.20303 3.27889 3.32738 4.18350 4.26932 4.33826 4.41916 4.78220 4.96747 5.02171 5.10478 5.21535 5.34273 5.43561 5.62045 5.77264 5.79512 6.05934 6.14633 6.30682 6.54370 6.67107 6.76625 6.89470 7.15971 7.26648 7.51198 8.45670 8.61078 8.98014 9.47798 11.02848 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.011380 B = 0.005611 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.958504 B = 4988.601211 C = 6848.375562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.075 3.925 3 Si 0.866 3.134 4 H -0.276 1.276 5 H -0.284 1.284 6 H -0.265 1.265 7 C -0.521 4.521 8 H 0.081 0.919 9 C 0.219 3.781 10 N -0.969 5.969 11 C 0.183 3.817 12 C 0.112 3.888 13 C -0.117 4.117 14 C -0.080 4.080 15 C -0.175 4.175 16 C 0.085 3.915 17 N -0.456 5.456 18 S 2.604 3.396 19 O -0.910 6.910 20 O -0.915 6.915 21 C -0.634 4.634 22 Br -0.089 7.089 23 H 0.264 0.736 24 H 0.036 0.964 25 H 0.032 0.968 26 H 0.086 0.914 27 H 0.092 0.908 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.125 0.875 31 H 0.147 0.853 32 H 0.156 0.844 33 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.391 -6.640 -2.585 14.293 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.128 4.128 3 Si 0.693 3.307 4 H -0.201 1.201 5 H -0.209 1.209 6 H -0.190 1.190 7 C -0.560 4.560 8 H 0.099 0.901 9 C 0.096 3.904 10 N -0.808 5.808 11 C 0.056 3.944 12 C -0.028 4.028 13 C -0.138 4.138 14 C -0.106 4.106 15 C -0.195 4.195 16 C -0.073 4.073 17 N -0.165 5.165 18 S 2.687 3.313 19 O -0.900 6.900 20 O -0.905 6.905 21 C -0.834 4.834 22 Br -0.009 7.009 23 H 0.074 0.926 24 H 0.054 0.946 25 H 0.050 0.950 26 H 0.105 0.895 27 H 0.110 0.890 28 H 0.152 0.848 29 H 0.145 0.855 30 H 0.143 0.857 31 H 0.164 0.836 32 H 0.174 0.826 33 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 12.541 -7.587 -0.836 14.681 hybrid contribution 0.109 2.049 -1.097 2.326 sum 12.650 -5.538 -1.932 13.944 Atomic orbital electron populations 1.69889 1.06103 1.26803 1.50200 1.24836 0.94698 0.98558 0.94685 0.87014 0.80642 0.84545 0.78457 1.20128 1.20926 1.18992 1.21281 0.88699 0.95033 1.50955 0.90115 1.19621 0.96901 0.76367 0.97465 1.57504 1.77455 1.25719 1.20119 1.19951 0.92812 0.94668 0.86950 1.21412 0.97394 0.90824 0.93149 1.21860 0.94454 0.99574 0.97901 1.21459 0.96177 0.94546 0.98412 1.22039 1.00636 0.96960 0.99865 1.22601 0.89931 0.99510 0.95246 1.67556 1.18393 1.10170 1.20372 1.05839 0.75567 0.75210 0.74722 1.93674 1.61258 1.75363 1.59708 1.93673 1.82771 1.30193 1.83887 1.34527 1.34705 1.14868 0.99261 1.97412 1.92618 1.90687 1.20175 0.92611 0.94602 0.94994 0.89537 0.89013 0.84848 0.85471 0.85689 0.83557 0.82594 0.82437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.30 13.96 55.43 0.77 -25.53 16 2 C 0.08 2.06 5.47 -17.82 -0.10 1.96 16 3 Si 0.87 19.97 27.47 -169.99 -4.67 15.30 16 4 H -0.28 -6.07 7.11 56.52 0.40 -5.67 16 5 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 6 H -0.27 -5.75 6.54 56.52 0.37 -5.38 16 7 C -0.52 -13.81 8.83 -34.44 -0.30 -14.11 16 8 H 0.08 2.43 7.28 -52.48 -0.38 2.05 16 9 C 0.22 4.68 4.10 -5.19 -0.02 4.66 16 10 N -0.97 -17.97 2.72 -116.95 -0.32 -18.29 16 11 C 0.18 2.90 5.59 -5.19 -0.03 2.87 16 12 C 0.11 2.07 5.58 -82.58 -0.46 1.61 16 13 C -0.12 -2.09 8.62 -39.44 -0.34 -2.43 16 14 C -0.08 -1.32 10.18 -39.28 -0.40 -1.72 16 15 C -0.17 -2.74 10.11 -39.44 -0.40 -3.14 16 16 C 0.08 1.45 11.18 -17.55 -0.20 1.25 16 17 N -0.46 -8.87 9.50 -9.47 -0.09 -8.96 16 18 S 2.60 48.09 5.37 -107.50 -0.58 47.51 16 19 O -0.91 -20.80 16.99 -57.54 -0.98 -21.78 16 20 O -0.92 -18.26 16.21 -57.54 -0.93 -19.20 16 21 C -0.63 -8.20 7.58 101.05 0.77 -7.43 16 22 Br -0.09 -1.22 33.94 -68.01 -2.31 -3.53 16 23 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 24 H 0.04 0.77 6.67 -51.93 -0.35 0.43 16 25 H 0.03 0.61 7.43 -51.93 -0.39 0.22 16 26 H 0.09 1.16 7.61 -51.93 -0.40 0.76 16 27 H 0.09 1.15 7.90 -51.93 -0.41 0.74 16 28 H 0.13 2.24 8.06 -52.49 -0.42 1.81 16 29 H 0.13 1.83 8.06 -52.48 -0.42 1.40 16 30 H 0.13 1.57 8.06 -52.49 -0.42 1.14 16 31 H 0.15 2.08 8.06 -52.49 -0.42 1.66 16 32 H 0.16 1.50 8.14 -51.93 -0.42 1.07 16 33 H 0.16 1.73 8.14 -51.92 -0.42 1.31 16 LS Contribution 317.85 15.07 4.79 4.79 Total: -1.00 -34.49 317.85 -9.41 -43.90 By element: Atomic # 1 Polarization: 5.89 SS G_CDS: -3.62 Total: 2.27 kcal Atomic # 6 Polarization: -15.01 SS G_CDS: -1.48 Total: -16.49 kcal Atomic # 7 Polarization: -53.14 SS G_CDS: 0.37 Total: -52.78 kcal Atomic # 8 Polarization: -39.06 SS G_CDS: -1.91 Total: -40.97 kcal Atomic # 14 Polarization: 19.97 SS G_CDS: -4.67 Total: 15.30 kcal Atomic # 16 Polarization: 48.09 SS G_CDS: -0.58 Total: 47.51 kcal Atomic # 35 Polarization: -1.22 SS G_CDS: -2.31 Total: -3.53 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.49 -9.41 -43.90 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271463619.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.253 kcal (2) G-P(sol) polarization free energy of solvation -34.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.239 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.904 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds