Wall clock time and date at job start Wed Apr 1 2020 05:14:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86796 * 119.99551 * 2 1 4 4 H 1.48498 * 109.47139 * 269.99270 * 3 2 1 5 5 H 1.48496 * 109.47263 * 29.99900 * 3 2 1 6 6 H 1.48504 * 109.46756 * 149.99565 * 3 2 1 7 7 C 1.37871 * 120.00008 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00100 * 0.02562 * 7 2 1 9 9 C 1.50703 * 119.99921 * 180.02562 * 7 2 1 10 10 N 1.46497 * 109.47124 * 180.02562 * 9 7 2 11 11 C 1.46504 * 120.00320 * 85.00119 * 10 9 7 12 12 C 1.50707 * 109.46935 * 275.00488 * 11 10 9 13 13 C 1.38227 * 119.62059 * 95.01845 * 12 11 10 14 14 C 1.38627 * 119.15702 * 179.74122 * 13 12 11 15 15 C 1.38669 * 118.42389 * 0.47826 * 14 13 12 16 16 C 1.38186 * 119.16143 * 359.49762 * 15 14 13 17 17 N 1.31856 * 119.61137 * 274.99275 * 12 11 10 18 18 S 1.65598 * 120.00244 * 265.00133 * 10 9 7 19 19 O 1.42101 * 104.27756 * 26.07487 * 18 10 9 20 20 O 1.42101 * 104.28189 * 153.92741 * 18 10 9 21 21 C 1.81399 * 104.45060 * 270.00103 * 18 10 9 22 22 Br 1.96600 * 109.47060 * 171.62309 * 21 18 10 23 23 H 0.96996 * 120.00260 * 0.02562 * 1 2 3 24 24 H 1.08999 * 109.46561 * 60.00417 * 9 7 2 25 25 H 1.08992 * 109.46855 * 300.00268 * 9 7 2 26 26 H 1.08997 * 109.47679 * 154.99955 * 11 10 9 27 27 H 1.09003 * 109.46652 * 34.99915 * 11 10 9 28 28 H 1.07998 * 120.41916 * 359.95342 * 13 12 11 29 29 H 1.08008 * 120.78688 * 180.22921 * 14 13 12 30 30 H 1.08002 * 120.42244 * 179.78279 * 15 14 13 31 31 H 1.07996 * 119.61757 * 180.25243 * 16 15 14 32 32 H 1.08994 * 109.47035 * 291.61962 * 21 18 10 33 33 H 1.08998 * 109.46762 * 51.62248 * 21 18 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7002 7 6 2.0045 -1.1940 0.0005 8 1 1.4645 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 7 3.9999 -2.5752 0.0010 11 6 4.1404 -3.3024 -1.2630 12 6 2.8182 -3.9224 -1.6354 13 6 1.9672 -3.2524 -2.4942 14 6 0.7558 -3.8341 -2.8346 15 6 0.4397 -5.0687 -2.2881 16 6 1.3410 -5.6789 -1.4367 17 7 2.4869 -5.0980 -1.1385 18 16 4.3932 -3.3145 1.4296 19 8 3.6014 -2.6442 2.4007 20 8 4.2145 -4.6998 1.1682 21 6 6.1506 -2.9332 1.6679 22 35 6.7105 -3.5159 3.4601 23 1 -0.4850 0.8400 -0.0004 24 1 3.8745 -0.6800 0.8912 25 1 3.8752 -0.6803 -0.8888 26 1 4.8901 -4.0856 -1.1503 27 1 4.4514 -2.6117 -2.0469 28 1 2.2441 -2.2897 -2.8977 29 1 0.0725 -3.3355 -3.5063 30 1 -0.4970 -5.5496 -2.5285 31 1 1.1042 -6.6424 -1.0102 32 1 6.7410 -3.4555 0.9151 33 1 6.3057 -1.8588 1.5702 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000271463619.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:00 Heat of formation + Delta-G solvation = -39.670609 kcal Electronic energy + Delta-G solvation = -21235.782178 eV Core-core repulsion = 17855.889541 eV Total energy + Delta-G solvation = -3379.892637 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.91345 -38.16711 -37.51296 -36.88054 -34.54329 -33.19499 -33.08569 -32.43127 -29.91381 -28.40733 -26.95210 -24.32125 -23.85724 -22.77871 -19.84302 -19.02835 -18.67054 -17.71019 -17.43287 -17.27168 -16.78755 -16.31760 -16.23418 -15.49031 -14.81476 -14.74299 -14.54901 -14.35753 -14.07772 -13.94983 -13.86843 -13.30604 -13.26557 -13.07139 -12.86716 -12.70912 -12.60784 -12.24568 -12.12586 -11.98010 -11.61479 -11.31693 -11.17884 -10.67239 -10.58719 -10.29047 -9.86184 -9.64626 -8.16358 -6.19257 -0.98027 -0.04193 0.35595 0.58455 1.40894 1.46108 1.53195 1.82362 2.42782 2.90437 3.02648 3.13262 3.18192 3.56087 3.72944 3.90335 4.05642 4.09548 4.16078 4.39762 4.44769 4.63636 4.74941 4.88588 4.92470 5.01615 5.24215 5.41719 5.46518 5.57690 5.69751 5.98212 6.41970 6.84838 7.27709 7.41192 9.00637 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.011380 B = 0.005611 C = 0.004088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2459.958504 B = 4988.601211 C = 6848.375562 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.009 3.991 3 Si 0.933 3.067 4 H -0.253 1.253 5 H -0.297 1.297 6 H -0.236 1.236 7 C -0.514 4.514 8 H 0.028 0.972 9 C 0.221 3.779 10 N -0.972 5.972 11 C 0.173 3.827 12 C 0.091 3.909 13 C -0.135 4.135 14 C -0.095 4.095 15 C -0.174 4.174 16 C 0.065 3.935 17 N -0.486 5.486 18 S 2.598 3.402 19 O -0.970 6.970 20 O -0.943 6.943 21 C -0.609 4.609 22 Br -0.091 7.091 23 H 0.262 0.738 24 H 0.041 0.959 25 H 0.069 0.931 26 H 0.111 0.889 27 H 0.128 0.872 28 H 0.138 0.862 29 H 0.145 0.855 30 H 0.157 0.843 31 H 0.168 0.832 32 H 0.200 0.800 33 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.375 -5.766 -3.517 16.793 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.188 4.188 3 Si 0.756 3.244 4 H -0.178 1.178 5 H -0.223 1.223 6 H -0.159 1.159 7 C -0.553 4.553 8 H 0.046 0.954 9 C 0.097 3.903 10 N -0.810 5.810 11 C 0.047 3.953 12 C -0.049 4.049 13 C -0.155 4.155 14 C -0.121 4.121 15 C -0.193 4.193 16 C -0.092 4.092 17 N -0.196 5.196 18 S 2.688 3.312 19 O -0.960 6.960 20 O -0.933 6.933 21 C -0.815 4.815 22 Br -0.011 7.011 23 H 0.071 0.929 24 H 0.059 0.941 25 H 0.086 0.914 26 H 0.129 0.871 27 H 0.146 0.854 28 H 0.156 0.844 29 H 0.163 0.837 30 H 0.175 0.825 31 H 0.185 0.815 32 H 0.218 0.782 33 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges 15.498 -6.755 -1.792 17.001 hybrid contribution -0.826 1.624 -0.774 1.980 sum 14.672 -5.131 -2.566 15.753 Atomic orbital electron populations 1.70087 1.08420 1.27650 1.52931 1.25798 0.95463 1.02986 0.94593 0.85945 0.80006 0.78710 0.79758 1.17773 1.22312 1.15929 1.21508 0.91658 0.92857 1.49306 0.95372 1.19501 0.93337 0.78401 0.99069 1.57289 1.78161 1.24593 1.20943 1.20383 0.92169 0.95935 0.86796 1.21907 0.98812 0.90867 0.93287 1.22073 0.95134 0.99930 0.98374 1.21841 0.96330 0.95120 0.98795 1.22379 1.01490 0.96623 0.98854 1.23104 0.89917 1.00539 0.95637 1.67582 1.19658 1.11111 1.21240 1.05468 0.77392 0.74360 0.73954 1.93611 1.65022 1.76023 1.61384 1.93641 1.84440 1.31343 1.83863 1.34144 1.29388 1.17626 1.00295 1.97457 1.92119 1.90822 1.20711 0.92945 0.94094 0.91353 0.87093 0.85414 0.84369 0.83733 0.82537 0.81505 0.78246 0.79405 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -58.00 13.96 21.45 0.30 -57.70 16 2 C 0.01 0.48 5.47 84.65 0.46 0.94 16 3 Si 0.93 40.12 27.47 68.60 1.88 42.00 16 4 H -0.25 -9.94 7.11 99.48 0.71 -9.24 16 5 H -0.30 -13.31 7.11 99.48 0.71 -12.60 16 6 H -0.24 -8.97 6.54 99.48 0.65 -8.32 16 7 C -0.51 -27.52 8.83 25.60 0.23 -27.29 16 8 H 0.03 1.77 7.28 -2.91 -0.02 1.75 16 9 C 0.22 8.94 4.10 85.63 0.35 9.29 16 10 N -0.97 -34.21 2.72 -523.91 -1.42 -35.63 16 11 C 0.17 5.10 5.59 85.63 0.48 5.58 16 12 C 0.09 3.34 5.58 42.55 0.24 3.58 16 13 C -0.13 -4.82 8.62 22.36 0.19 -4.63 16 14 C -0.09 -3.17 10.18 22.47 0.23 -2.94 16 15 C -0.17 -5.43 10.11 22.36 0.23 -5.21 16 16 C 0.07 2.25 11.18 84.67 0.95 3.19 16 17 N -0.49 -19.11 9.50 -183.88 -1.75 -20.86 16 18 S 2.60 92.63 5.37 -56.49 -0.30 92.32 16 19 O -0.97 -44.72 16.99 -127.65 -2.17 -46.88 16 20 O -0.94 -37.25 16.21 -127.65 -2.07 -39.31 16 21 C -0.61 -13.30 7.58 113.37 0.86 -12.44 16 22 Br -0.09 -2.27 33.94 -20.37 -0.69 -2.96 16 23 H 0.26 15.06 8.31 -92.71 -0.77 14.29 16 24 H 0.04 1.64 6.67 -2.39 -0.02 1.62 16 25 H 0.07 2.31 7.43 -2.39 -0.02 2.29 16 26 H 0.11 2.67 7.61 -2.39 -0.02 2.65 16 27 H 0.13 2.76 7.90 -2.39 -0.02 2.74 16 28 H 0.14 4.62 8.06 -2.91 -0.02 4.59 16 29 H 0.14 4.14 8.06 -2.91 -0.02 4.12 16 30 H 0.16 3.74 8.06 -2.91 -0.02 3.72 16 31 H 0.17 4.77 8.06 -2.91 -0.02 4.74 16 32 H 0.20 2.71 8.14 -2.39 -0.02 2.69 16 33 H 0.19 3.14 8.14 -2.39 -0.02 3.12 16 Total: -1.00 -79.84 317.85 -0.94 -80.78 By element: Atomic # 1 Polarization: 17.10 SS G_CDS: 1.07 Total: 18.17 kcal Atomic # 6 Polarization: -34.14 SS G_CDS: 4.21 Total: -29.92 kcal Atomic # 7 Polarization: -111.33 SS G_CDS: -2.87 Total: -114.20 kcal Atomic # 8 Polarization: -81.96 SS G_CDS: -4.24 Total: -86.20 kcal Atomic # 14 Polarization: 40.12 SS G_CDS: 1.88 Total: 42.00 kcal Atomic # 16 Polarization: 92.63 SS G_CDS: -0.30 Total: 92.32 kcal Atomic # 35 Polarization: -2.27 SS G_CDS: -0.69 Total: -2.96 kcal Total: -79.84 -0.94 -80.78 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000271463619.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.112 kcal (2) G-P(sol) polarization free energy of solvation -79.843 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.783 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds