Wall clock time and date at job start Wed Apr 1 2020 05:35:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38236 * 119.99365 * 2 1 4 4 C 1.38330 * 119.98615 * 179.72185 * 3 2 1 5 5 Cl 1.73601 * 120.01508 * 180.30278 * 4 3 2 6 6 C 1.38372 * 119.97165 * 0.57710 * 4 3 2 7 7 S 1.76204 * 120.00551 * 179.72308 * 6 4 3 8 8 O 1.42095 * 106.40218 * 48.26515 * 7 6 4 9 9 O 1.42097 * 106.40195 * 181.18415 * 7 6 4 10 10 N 1.65603 * 107.21855 * 294.72311 * 7 6 4 11 11 C 1.46500 * 119.99884 * 64.99913 * 10 7 6 12 12 C 1.52995 * 109.47046 * 164.99909 * 11 10 7 13 13 C 1.50701 * 109.47041 * 180.02562 * 12 11 10 14 14 H 1.07994 * 120.00086 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99687 * 179.97438 * 13 12 11 16 16 N 1.31518 * 119.99779 * 179.97438 * 15 13 12 17 17 Si 1.86796 * 120.00441 * 0.02562 * 15 13 12 18 18 H 1.48503 * 109.47376 * 89.99539 * 17 15 13 19 19 H 1.48496 * 109.47336 * 209.99971 * 17 15 13 20 20 H 1.48496 * 109.46908 * 329.99710 * 17 15 13 21 21 C 1.38188 * 119.98800 * 359.44913 * 6 4 3 22 22 C 1.38217 * 119.99181 * 180.02562 * 2 1 3 23 23 N 1.48015 * 119.98887 * 0.02562 * 22 2 1 24 24 O 1.21804 * 120.00292 * 173.56874 * 23 22 2 25 25 O 1.21803 * 120.00039 * 353.56475 * 23 22 2 26 26 H 1.08998 * 109.47556 * 263.09535 * 1 2 3 27 27 H 1.09002 * 109.46999 * 23.09461 * 1 2 3 28 28 H 1.08996 * 109.47651 * 143.09164 * 1 2 3 29 29 H 1.08006 * 120.00951 * 0.02562 * 3 2 1 30 30 H 0.96994 * 120.00008 * 244.99878 * 10 7 6 31 31 H 1.08995 * 109.47153 * 285.00238 * 11 10 7 32 32 H 1.09003 * 109.46743 * 45.00284 * 11 10 7 33 33 H 1.09005 * 109.47567 * 300.00164 * 12 11 10 34 34 H 1.09001 * 109.47410 * 60.00174 * 12 11 10 35 35 H 0.96998 * 120.00067 * 180.02562 * 16 15 13 36 36 H 1.08000 * 119.99993 * 180.22933 * 21 6 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1980 1.1972 0.0000 4 6 3.5813 1.1971 0.0058 5 17 4.4499 2.7002 0.0138 6 6 4.2725 -0.0017 -0.0004 7 16 6.0345 -0.0029 -0.0004 8 8 6.4364 0.8989 1.0215 9 8 6.4348 -1.3659 -0.0357 10 7 6.5252 0.6658 -1.4337 11 6 6.2308 2.0711 -1.7252 12 6 7.0900 2.5387 -2.9016 13 6 6.7876 3.9844 -3.2010 14 1 6.0562 4.5165 -2.6109 15 6 7.4456 4.6280 -4.2276 16 7 7.1814 5.8895 -4.4892 17 14 8.7113 3.7079 -5.2477 18 1 8.0416 3.0697 -6.4094 19 1 9.7430 4.6596 -5.7325 20 1 9.3554 2.6628 -4.4122 21 6 3.5806 -1.1979 -0.0010 22 6 2.1979 -1.1971 -0.0005 23 7 1.4574 -2.4787 -0.0017 24 8 2.0603 -3.5304 -0.1203 25 8 0.2451 -2.4817 0.1161 26 1 -0.3634 -0.1235 1.0202 27 1 -0.3633 0.9453 -0.4031 28 1 -0.3634 -0.8217 -0.6171 29 1 1.6581 2.1326 0.0004 30 1 7.0075 0.1272 -2.0803 31 1 5.1765 2.1759 -1.9809 32 1 6.4542 2.6785 -0.8481 33 1 8.1444 2.4339 -2.6459 34 1 6.8667 1.9313 -3.7787 35 1 7.6440 6.3422 -5.2116 36 1 4.1198 -2.1336 -0.0021 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273590310.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:35:42 Heat of formation + Delta-G solvation = -40.969926 kcal Electronic energy + Delta-G solvation = -26262.992952 eV Core-core repulsion = 22097.471658 eV Total energy + Delta-G solvation = -4165.521294 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.65101 -40.17524 -37.69482 -37.15408 -36.98722 -36.01104 -35.76265 -33.78991 -32.82492 -32.33470 -29.86973 -28.61304 -26.57607 -24.82006 -23.50342 -22.96863 -21.24083 -20.39451 -19.26560 -18.95245 -18.00374 -17.82604 -17.53471 -17.02031 -16.61821 -16.18670 -15.93053 -14.96992 -14.76982 -14.57063 -14.37671 -14.23708 -13.55480 -13.47930 -13.35147 -12.98417 -12.84091 -12.47148 -12.26967 -12.24977 -12.15092 -11.93553 -11.75605 -11.54219 -11.49900 -11.39845 -11.11179 -10.93534 -10.61193 -10.20576 -10.03502 -9.96716 -9.72588 -9.41036 -9.16082 -8.69517 -6.20355 -4.21199 -0.73073 -0.13704 0.19081 0.76552 0.90855 1.31605 2.29618 2.87611 3.19952 3.29128 3.30402 3.39426 3.62995 3.75363 3.94293 4.15864 4.30866 4.44720 4.67282 4.72264 4.83945 4.92523 5.02168 5.13476 5.24071 5.37777 5.46219 5.49832 5.82245 6.02896 6.05673 6.33254 6.96911 7.03111 7.12064 7.29073 7.57378 8.31711 8.80969 9.40155 10.92270 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.015098 B = 0.003450 C = 0.003255 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1854.162322 B = 8114.931153 C = 8601.181410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.045 3.955 3 C -0.134 4.134 4 C 0.093 3.907 5 Cl 0.019 6.981 6 C -0.683 4.683 7 S 2.691 3.309 8 O -0.932 6.932 9 O -0.955 6.955 10 N -1.104 6.104 11 C 0.115 3.885 12 C -0.019 4.019 13 C -0.526 4.526 14 H 0.075 0.925 15 C 0.072 3.928 16 N -0.897 5.897 17 Si 0.879 3.121 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.264 1.264 21 C 0.061 3.939 22 C -0.074 4.074 23 N 0.034 4.966 24 O -0.156 6.156 25 O -0.153 6.153 26 H 0.100 0.900 27 H 0.084 0.916 28 H 0.106 0.894 29 H 0.168 0.832 30 H 0.421 0.579 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.028 0.972 34 H 0.021 0.979 35 H 0.265 0.735 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.829 -11.640 9.425 19.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.043 3.957 3 C -0.153 4.153 4 C 0.064 3.936 5 Cl 0.050 6.950 6 C -0.766 4.766 7 S 2.774 3.226 8 O -0.921 6.921 9 O -0.945 6.945 10 N -0.868 5.868 11 C -0.009 4.009 12 C -0.059 4.059 13 C -0.565 4.565 14 H 0.093 0.907 15 C -0.131 4.131 16 N -0.535 5.535 17 Si 0.706 3.294 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.189 1.189 21 C 0.041 3.959 22 C -0.159 4.159 23 N 0.552 4.448 24 O -0.371 6.371 25 O -0.367 6.367 26 H 0.118 0.882 27 H 0.103 0.897 28 H 0.125 0.875 29 H 0.186 0.814 30 H 0.256 0.744 31 H 0.082 0.918 32 H 0.098 0.902 33 H 0.046 0.954 34 H 0.039 0.961 35 H 0.075 0.925 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -10.986 -10.918 10.120 18.502 hybrid contribution 0.029 -0.558 -1.256 1.375 sum -10.957 -11.475 8.864 18.175 Atomic orbital electron populations 1.21487 0.87199 1.05588 1.05357 1.20108 0.98653 0.89856 0.87120 1.21231 0.91802 0.98787 1.03524 1.21146 0.93628 0.88953 0.89880 1.98593 1.72571 1.29566 1.94309 1.31399 1.30218 0.95957 1.19022 1.02331 0.72680 0.73506 0.74061 1.93660 1.78659 1.64910 1.54914 1.93597 1.80209 1.34020 1.86683 1.55497 1.70980 1.21666 1.38655 1.22238 1.00318 0.77132 1.01187 1.19821 0.95732 0.97794 0.92508 1.20881 1.24707 0.93672 1.17194 0.90675 1.24974 0.96515 0.94726 0.96868 1.69889 1.42489 1.10260 1.30832 0.86796 0.81753 0.80073 0.80792 1.20192 1.21192 1.18871 1.20734 0.91339 0.99052 0.84744 1.21031 0.92474 0.84119 1.18240 1.43372 1.01098 1.02403 0.97886 1.94594 1.70111 1.19341 1.53041 1.94473 0.95943 1.93586 1.52743 0.88219 0.89740 0.87544 0.81431 0.74353 0.91809 0.90248 0.95407 0.96109 0.92466 0.80287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.91 8.68 36.01 0.31 -0.60 16 2 C 0.04 0.41 5.88 -104.63 -0.62 -0.21 16 3 C -0.13 -1.22 9.46 -39.55 -0.37 -1.60 16 4 C 0.09 1.08 6.09 -39.50 -0.24 0.84 16 5 Cl 0.02 0.26 20.66 -51.86 -1.07 -0.81 16 6 C -0.68 -8.35 5.89 -39.55 -0.23 -8.58 16 7 S 2.69 37.45 5.44 -107.50 -0.58 36.86 16 8 O -0.93 -15.11 15.95 -57.18 -0.91 -16.02 16 9 O -0.96 -14.22 16.97 -57.18 -0.97 -15.19 16 10 N -1.10 -15.85 6.00 -10.62 -0.06 -15.91 16 11 C 0.12 2.01 4.05 -4.04 -0.02 1.99 16 12 C -0.02 -0.41 4.18 -27.89 -0.12 -0.53 16 13 C -0.53 -13.70 9.66 -34.44 -0.33 -14.03 16 14 H 0.08 2.07 7.99 -52.49 -0.42 1.65 16 15 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 16 N -0.90 -26.08 13.96 55.43 0.77 -25.30 16 17 Si 0.88 20.34 27.47 -169.99 -4.67 15.67 16 18 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 19 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 20 H -0.26 -5.82 6.54 56.52 0.37 -5.45 16 21 C 0.06 0.70 9.06 -39.59 -0.36 0.34 16 22 C -0.07 -0.82 6.83 -79.95 -0.55 -1.37 16 23 N 0.03 0.41 4.45 33.96 0.15 0.56 16 24 O -0.16 -2.04 18.46 -29.46 -0.54 -2.58 16 25 O -0.15 -1.74 15.36 -29.46 -0.45 -2.20 16 26 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.08 0.38 8.04 -51.93 -0.42 -0.04 16 28 H 0.11 0.77 5.86 -51.93 -0.30 0.47 16 29 H 0.17 1.06 8.06 -52.48 -0.42 0.64 16 30 H 0.42 5.23 8.65 -34.47 -0.30 4.94 16 31 H 0.06 1.03 6.17 -51.93 -0.32 0.71 16 32 H 0.08 1.42 5.89 -51.93 -0.31 1.12 16 33 H 0.03 0.60 7.20 -51.93 -0.37 0.22 16 34 H 0.02 0.42 7.57 -51.93 -0.39 0.03 16 35 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 36 H 0.18 1.89 6.90 -52.49 -0.36 1.53 16 LS Contribution 329.51 15.07 4.97 4.97 Total: -1.00 -31.89 329.51 -9.20 -41.09 By element: Atomic # 1 Polarization: 3.94 SS G_CDS: -3.21 Total: 0.73 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -2.62 Total: -21.87 kcal Atomic # 7 Polarization: -41.52 SS G_CDS: 0.86 Total: -40.65 kcal Atomic # 8 Polarization: -33.11 SS G_CDS: -2.88 Total: -35.99 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.67 Total: 15.67 kcal Atomic # 16 Polarization: 37.45 SS G_CDS: -0.58 Total: 36.86 kcal Atomic # 17 Polarization: 0.26 SS G_CDS: -1.07 Total: -0.81 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -31.89 -9.20 -41.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273590310.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.123 kcal (2) G-P(sol) polarization free energy of solvation -31.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds