Wall clock time and date at job start Wed Apr 1 2020 05:16:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47208 * 2 1 4 4 H 1.08996 * 109.47667 * 55.21945 * 3 2 1 5 5 C 1.50696 * 109.47120 * 175.22582 * 3 2 1 6 6 H 1.08004 * 120.00347 * 119.99453 * 5 3 2 7 7 C 1.37881 * 119.99918 * 299.99821 * 5 3 2 8 8 N 1.31512 * 119.99911 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99784 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.47540 * 59.99800 * 9 7 5 11 11 H 1.48500 * 109.46809 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47195 * 299.99122 * 9 7 5 13 13 N 1.46508 * 109.46801 * 295.21995 * 3 2 1 14 14 S 1.65599 * 119.99795 * 124.37715 * 13 3 2 15 15 O 1.42102 * 106.40306 * 311.78229 * 14 13 3 16 16 O 1.42095 * 106.40137 * 178.86052 * 14 13 3 17 17 C 1.76204 * 107.21754 * 65.32166 * 14 13 3 18 18 C 1.38229 * 119.60751 * 149.99729 * 17 14 13 19 19 C 1.38611 * 119.17662 * 179.97438 * 18 17 14 20 20 C 1.38758 * 118.40851 * 359.97438 * 19 18 17 21 21 Br 1.89100 * 120.42972 * 179.97438 * 20 19 18 22 22 C 1.38287 * 119.14398 * 0.02562 * 20 19 18 23 23 N 1.31853 * 119.60488 * 329.73002 * 17 14 13 24 24 H 1.09000 * 109.47617 * 295.61399 * 1 2 3 25 25 H 1.09008 * 109.46816 * 55.61202 * 1 2 3 26 26 H 1.08996 * 109.47431 * 175.60713 * 1 2 3 27 27 H 1.08990 * 109.47392 * 239.99398 * 2 1 3 28 28 H 1.09001 * 109.46654 * 119.99538 * 2 1 3 29 29 H 0.96996 * 119.99907 * 180.02562 * 8 7 5 30 30 H 0.96996 * 119.99696 * 304.38271 * 13 3 2 31 31 H 1.08004 * 120.41165 * 359.95931 * 18 17 14 32 32 H 1.07996 * 120.80121 * 180.02562 * 19 18 17 33 33 H 1.07994 * 119.62310 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6085 1.9805 0.8440 5 6 3.5423 1.4441 0.1182 6 1 4.1448 1.8896 -0.6596 7 6 4.1478 0.8768 1.2195 8 7 3.4142 0.3347 2.1668 9 14 6.0100 0.8794 1.3663 10 1 6.5046 2.2795 1.3666 11 1 6.4075 0.2143 2.6332 12 1 6.5983 0.1468 0.2165 13 7 1.6479 2.0991 -1.2496 14 16 0.7796 3.5085 -1.2073 15 8 -0.2906 3.2934 -0.2975 16 8 0.5836 3.8998 -2.5592 17 6 1.8128 4.7360 -0.4789 18 6 1.6631 6.0602 -0.8459 19 6 2.4802 7.0184 -0.2668 20 6 3.4223 6.6068 0.6651 21 35 4.5672 7.8658 1.4899 22 6 3.5139 5.2639 0.9822 23 7 2.7161 4.3810 0.4136 24 1 -0.3634 0.4443 0.9266 25 1 -0.3633 0.5805 -0.8481 26 1 -0.3634 -1.0246 -0.0787 27 1 1.8933 -0.5139 -0.8898 28 1 1.8932 -0.5138 0.8901 29 1 3.8401 -0.0641 2.9417 30 1 1.8968 1.7081 -2.1017 31 1 0.9187 6.3447 -1.5749 32 1 2.3855 8.0605 -0.5339 33 1 4.2446 4.9350 1.7061 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000273948382.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:51 Heat of formation + Delta-G solvation = -36.788693 kcal Electronic energy + Delta-G solvation = -21107.942420 eV Core-core repulsion = 17728.174752 eV Total energy + Delta-G solvation = -3379.767668 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.12349 -36.84224 -35.85187 -35.47532 -33.28583 -32.24117 -32.06499 -30.52129 -29.77064 -26.57166 -24.04824 -23.57819 -22.93698 -20.08483 -19.36857 -17.94243 -17.26641 -16.57650 -16.19493 -15.89223 -15.32069 -14.80380 -14.72577 -14.15314 -13.69539 -13.41250 -13.06709 -12.88115 -12.58606 -11.88504 -11.77523 -11.59367 -11.54097 -11.51281 -11.21619 -11.15061 -10.91159 -10.77141 -10.64343 -10.27331 -9.93805 -9.87217 -9.70847 -9.62562 -9.25083 -9.21998 -8.39387 -8.19681 -6.00920 -4.05268 0.38986 0.85959 1.08084 1.27220 3.27892 3.31215 3.34692 3.37135 3.51716 3.93226 4.41395 4.46069 4.58524 4.71342 4.91367 5.17230 5.29794 5.37514 5.48602 5.72117 6.25680 6.28569 6.36433 6.43343 6.66430 6.95342 7.14884 7.27990 7.66388 7.68493 7.73393 7.95869 8.10456 8.34593 8.93416 9.57490 11.04411 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.011038 B = 0.005382 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.976853 B = 5201.231896 C = 7259.812474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.127 4.127 3 C 0.283 3.717 4 H 0.057 0.943 5 C -0.503 4.503 6 H 0.058 0.942 7 C 0.066 3.934 8 N -0.890 5.890 9 Si 0.889 3.111 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.279 1.279 13 N -1.084 6.084 14 S 2.698 3.302 15 O -0.947 6.947 16 O -0.975 6.975 17 C -0.421 4.421 18 C -0.092 4.092 19 C -0.067 4.067 20 C -0.108 4.108 21 Br -0.033 7.033 22 C 0.120 3.880 23 N -0.338 5.338 24 H 0.049 0.951 25 H 0.035 0.965 26 H 0.033 0.967 27 H 0.038 0.962 28 H 0.105 0.895 29 H 0.262 0.738 30 H 0.409 0.591 31 H 0.154 0.846 32 H 0.151 0.849 33 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.230 13.496 -2.757 13.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.168 4.168 3 C 0.179 3.821 4 H 0.075 0.925 5 C -0.543 4.543 6 H 0.076 0.924 7 C -0.136 4.136 8 N -0.529 5.529 9 Si 0.717 3.283 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.205 1.205 13 N -0.846 5.846 14 S 2.781 3.219 15 O -0.937 6.937 16 O -0.965 6.965 17 C -0.639 4.639 18 C -0.114 4.114 19 C -0.095 4.095 20 C -0.190 4.190 21 Br 0.052 6.948 22 C -0.042 4.042 23 N -0.047 5.047 24 H 0.068 0.932 25 H 0.055 0.945 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.123 0.877 29 H 0.072 0.928 30 H 0.242 0.758 31 H 0.171 0.829 32 H 0.168 0.832 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -0.144 13.227 -2.123 13.397 hybrid contribution 1.680 0.902 -0.253 1.923 sum 1.536 14.129 -2.376 14.409 Atomic orbital electron populations 1.21826 0.98807 0.99017 1.00856 1.21922 0.92221 0.99628 1.02986 1.18652 0.94897 0.89754 0.78794 0.92516 1.21245 0.90929 1.36698 1.05414 0.92374 1.24804 0.97623 0.95466 0.95696 1.69836 1.34760 1.38718 1.09576 0.86726 0.86216 0.78123 0.77235 1.20450 1.21411 1.20486 1.55326 1.74725 1.37834 1.16751 1.02084 0.73921 0.73080 0.72859 1.93625 1.49935 1.84290 1.65833 1.93561 1.85544 1.83436 1.33955 1.34370 1.11092 1.12080 1.06369 1.21891 0.98829 0.92341 0.98326 1.21558 0.93182 1.00847 0.93945 1.23321 0.99014 0.95850 1.00832 1.96751 1.62730 1.55592 1.79742 1.23327 0.96866 0.86794 0.97169 1.68444 0.99428 1.34699 1.02093 0.93188 0.94541 0.94809 0.94357 0.87673 0.92799 0.75758 0.82872 0.83179 0.80920 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.96 9.85 37.16 0.37 -2.60 16 2 C -0.13 -2.84 5.45 -26.73 -0.15 -2.98 16 3 C 0.28 6.47 1.52 -69.08 -0.10 6.36 16 4 H 0.06 1.44 7.40 -51.93 -0.38 1.06 16 5 C -0.50 -12.36 8.02 -34.44 -0.28 -12.64 16 6 H 0.06 1.42 7.81 -52.48 -0.41 1.01 16 7 C 0.07 1.67 5.29 -17.82 -0.09 1.58 16 8 N -0.89 -23.58 11.30 55.43 0.63 -22.95 16 9 Si 0.89 20.08 29.54 -169.99 -5.02 15.05 16 10 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 11 H -0.29 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 13 N -1.08 -21.04 4.71 -5.88 -0.03 -21.06 16 14 S 2.70 50.05 5.63 -107.50 -0.60 49.44 16 15 O -0.95 -19.87 17.52 -57.17 -1.00 -20.87 16 16 O -0.98 -18.12 17.65 -57.17 -1.01 -19.13 16 17 C -0.42 -7.44 6.77 -17.55 -0.12 -7.56 16 18 C -0.09 -1.31 9.57 -39.45 -0.38 -1.69 16 19 C -0.07 -0.83 9.94 -39.25 -0.39 -1.22 16 20 C -0.11 -1.49 6.25 -39.37 -0.25 -1.74 16 21 Br -0.03 -0.38 33.74 -68.01 -2.29 -2.67 16 22 C 0.12 2.00 10.95 -17.51 -0.19 1.81 16 23 N -0.34 -6.50 8.40 -12.43 -0.10 -6.61 16 24 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 25 H 0.04 0.69 7.63 -51.92 -0.40 0.29 16 26 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 27 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 28 H 0.11 2.61 5.96 -51.93 -0.31 2.30 16 29 H 0.26 6.73 8.31 -40.82 -0.34 6.39 16 30 H 0.41 6.98 8.96 -34.47 -0.31 6.67 16 31 H 0.15 1.74 7.94 -52.48 -0.42 1.32 16 32 H 0.15 1.33 8.06 -52.49 -0.42 0.91 16 33 H 0.17 2.71 8.06 -52.49 -0.42 2.28 16 LS Contribution 317.94 15.07 4.79 4.79 Total: -1.00 -29.45 317.94 -9.70 -39.15 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -3.47 Total: 5.53 kcal Atomic # 6 Polarization: -19.10 SS G_CDS: -1.58 Total: -20.68 kcal Atomic # 7 Polarization: -51.12 SS G_CDS: 0.49 Total: -50.63 kcal Atomic # 8 Polarization: -37.99 SS G_CDS: -2.01 Total: -40.00 kcal Atomic # 14 Polarization: 20.08 SS G_CDS: -5.02 Total: 15.05 kcal Atomic # 16 Polarization: 50.05 SS G_CDS: -0.60 Total: 49.44 kcal Atomic # 35 Polarization: -0.38 SS G_CDS: -2.29 Total: -2.67 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -29.45 -9.70 -39.15 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273948382.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.364 kcal (2) G-P(sol) polarization free energy of solvation -29.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.699 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.152 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds