Wall clock time and date at job start Wed Apr 1 2020 05:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47208 * 2 1 4 4 H 1.08996 * 109.47667 * 55.21945 * 3 2 1 5 5 C 1.50696 * 109.47120 * 175.22582 * 3 2 1 6 6 H 1.08004 * 120.00347 * 119.99453 * 5 3 2 7 7 C 1.37881 * 119.99918 * 299.99821 * 5 3 2 8 8 N 1.31512 * 119.99911 * 359.97438 * 7 5 3 9 9 Si 1.86798 * 119.99784 * 180.02562 * 7 5 3 10 10 H 1.48490 * 109.47540 * 59.99800 * 9 7 5 11 11 H 1.48500 * 109.46809 * 179.97438 * 9 7 5 12 12 H 1.48494 * 109.47195 * 299.99122 * 9 7 5 13 13 N 1.46508 * 109.46801 * 295.21995 * 3 2 1 14 14 S 1.65599 * 119.99795 * 124.37715 * 13 3 2 15 15 O 1.42102 * 106.40306 * 311.78229 * 14 13 3 16 16 O 1.42095 * 106.40137 * 178.86052 * 14 13 3 17 17 C 1.76204 * 107.21754 * 65.32166 * 14 13 3 18 18 C 1.38229 * 119.60751 * 149.99729 * 17 14 13 19 19 C 1.38611 * 119.17662 * 179.97438 * 18 17 14 20 20 C 1.38758 * 118.40851 * 359.97438 * 19 18 17 21 21 Br 1.89100 * 120.42972 * 179.97438 * 20 19 18 22 22 C 1.38287 * 119.14398 * 0.02562 * 20 19 18 23 23 N 1.31853 * 119.60488 * 329.73002 * 17 14 13 24 24 H 1.09000 * 109.47617 * 295.61399 * 1 2 3 25 25 H 1.09008 * 109.46816 * 55.61202 * 1 2 3 26 26 H 1.08996 * 109.47431 * 175.60713 * 1 2 3 27 27 H 1.08990 * 109.47392 * 239.99398 * 2 1 3 28 28 H 1.09001 * 109.46654 * 119.99538 * 2 1 3 29 29 H 0.96996 * 119.99907 * 180.02562 * 8 7 5 30 30 H 0.96996 * 119.99696 * 304.38271 * 13 3 2 31 31 H 1.08004 * 120.41165 * 359.95931 * 18 17 14 32 32 H 1.07996 * 120.80121 * 180.02562 * 19 18 17 33 33 H 1.07994 * 119.62310 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6085 1.9805 0.8440 5 6 3.5423 1.4441 0.1182 6 1 4.1448 1.8896 -0.6596 7 6 4.1478 0.8768 1.2195 8 7 3.4142 0.3347 2.1668 9 14 6.0100 0.8794 1.3663 10 1 6.5046 2.2795 1.3666 11 1 6.4075 0.2143 2.6332 12 1 6.5983 0.1468 0.2165 13 7 1.6479 2.0991 -1.2496 14 16 0.7796 3.5085 -1.2073 15 8 -0.2906 3.2934 -0.2975 16 8 0.5836 3.8998 -2.5592 17 6 1.8128 4.7360 -0.4789 18 6 1.6631 6.0602 -0.8459 19 6 2.4802 7.0184 -0.2668 20 6 3.4223 6.6068 0.6651 21 35 4.5672 7.8658 1.4899 22 6 3.5139 5.2639 0.9822 23 7 2.7161 4.3810 0.4136 24 1 -0.3634 0.4443 0.9266 25 1 -0.3633 0.5805 -0.8481 26 1 -0.3634 -1.0246 -0.0787 27 1 1.8933 -0.5139 -0.8898 28 1 1.8932 -0.5138 0.8901 29 1 3.8401 -0.0641 2.9417 30 1 1.8968 1.7081 -2.1017 31 1 0.9187 6.3447 -1.5749 32 1 2.3855 8.0605 -0.5339 33 1 4.2446 4.9350 1.7061 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000273948382.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:16:50 Heat of formation + Delta-G solvation = -57.371869 kcal Electronic energy + Delta-G solvation = -21108.834973 eV Core-core repulsion = 17728.174752 eV Total energy + Delta-G solvation = -3380.660221 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.31135 -38.38200 -37.57364 -37.01763 -34.42953 -34.02304 -33.31118 -32.19055 -30.87275 -28.42898 -25.24156 -24.78984 -24.73693 -21.84676 -20.77417 -19.37323 -18.72562 -18.26308 -17.61170 -17.09722 -16.91746 -16.46062 -15.98878 -15.57958 -15.26844 -14.79579 -14.62378 -14.44056 -13.75043 -13.48506 -13.42358 -13.23338 -13.16007 -12.95808 -12.71367 -12.61660 -12.56641 -12.49157 -12.04727 -11.67407 -11.64327 -11.47245 -11.32600 -11.05522 -10.59246 -10.36015 -10.33041 -9.91154 -7.95064 -6.03718 -0.80573 -0.57466 -0.02817 0.20631 1.47723 1.49887 1.55324 1.91148 2.23038 2.51251 2.55635 3.25312 3.34264 3.54102 3.54962 3.78068 3.79560 4.30982 4.38164 4.58260 4.65055 4.66499 4.77000 4.97628 5.13907 5.21097 5.43292 5.52879 5.79743 5.90613 6.16747 6.33322 6.46627 6.53906 6.99685 7.61178 9.09214 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.011038 B = 0.005382 C = 0.003856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2535.976853 B = 5201.231896 C = 7259.812474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.127 4.127 3 C 0.292 3.708 4 H 0.028 0.972 5 C -0.500 4.500 6 H 0.056 0.944 7 C 0.024 3.976 8 N -0.916 5.916 9 Si 0.939 3.061 10 H -0.273 1.273 11 H -0.291 1.291 12 H -0.277 1.277 13 N -1.087 6.087 14 S 2.716 3.284 15 O -0.978 6.978 16 O -0.975 6.975 17 C -0.447 4.447 18 C -0.087 4.087 19 C -0.054 4.054 20 C -0.103 4.103 21 Br -0.004 7.004 22 C 0.099 3.901 23 N -0.381 5.381 24 H 0.034 0.966 25 H 0.044 0.956 26 H 0.057 0.943 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.259 0.741 30 H 0.418 0.582 31 H 0.184 0.816 32 H 0.195 0.805 33 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.734 15.506 -3.815 15.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.167 4.167 3 C 0.187 3.813 4 H 0.046 0.954 5 C -0.540 4.540 6 H 0.074 0.926 7 C -0.175 4.175 8 N -0.557 5.557 9 Si 0.766 3.234 10 H -0.198 1.198 11 H -0.217 1.217 12 H -0.202 1.202 13 N -0.849 5.849 14 S 2.802 3.198 15 O -0.967 6.967 16 O -0.965 6.965 17 C -0.667 4.667 18 C -0.109 4.109 19 C -0.082 4.082 20 C -0.185 4.185 21 Br 0.081 6.919 22 C -0.063 4.063 23 N -0.090 5.090 24 H 0.053 0.947 25 H 0.063 0.937 26 H 0.076 0.924 27 H 0.065 0.935 28 H 0.097 0.903 29 H 0.068 0.932 30 H 0.254 0.746 31 H 0.201 0.799 32 H 0.212 0.788 33 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 0.344 15.215 -3.221 15.556 hybrid contribution 1.560 0.437 0.085 1.622 sum 1.904 15.652 -3.136 16.076 Atomic orbital electron populations 1.21748 0.97164 1.00570 1.00402 1.21821 0.93741 0.99058 1.02082 1.18285 0.93877 0.89882 0.79222 0.95413 1.21433 0.91881 1.35630 1.05014 0.92591 1.25395 1.00862 0.95584 0.95674 1.69967 1.35949 1.39787 1.09992 0.85918 0.82375 0.78191 0.76890 1.19839 1.21729 1.20232 1.55119 1.74748 1.38869 1.16136 1.01307 0.73342 0.72773 0.72402 1.93583 1.51768 1.84826 1.66541 1.93552 1.85705 1.83335 1.33903 1.33938 1.11849 1.13225 1.07689 1.22309 0.99218 0.91131 0.98254 1.22069 0.91353 1.02522 0.92231 1.23444 0.99228 0.95350 1.00501 1.96785 1.61923 1.53852 1.79367 1.23370 0.97086 0.88108 0.97784 1.68272 1.00759 1.36618 1.03388 0.94724 0.93684 0.92423 0.93457 0.90296 0.93162 0.74649 0.79899 0.78777 0.81201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.68 9.85 71.98 0.71 -4.97 16 2 C -0.13 -5.73 5.45 30.59 0.17 -5.57 16 3 C 0.29 13.65 1.52 44.24 0.07 13.72 16 4 H 0.03 1.48 7.40 -2.39 -0.02 1.46 16 5 C -0.50 -24.89 8.02 25.60 0.21 -24.68 16 6 H 0.06 2.76 7.81 -2.91 -0.02 2.73 16 7 C 0.02 1.22 5.29 84.66 0.45 1.67 16 8 N -0.92 -49.85 11.30 21.45 0.24 -49.60 16 9 Si 0.94 41.42 29.54 68.60 2.03 43.45 16 10 H -0.27 -11.68 7.11 99.48 0.71 -10.97 16 11 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 12 H -0.28 -12.02 7.11 99.48 0.71 -11.31 16 13 N -1.09 -42.39 4.71 -172.52 -0.81 -43.20 16 14 S 2.72 100.21 5.63 -56.49 -0.32 99.89 16 15 O -0.98 -41.50 17.52 -128.00 -2.24 -43.74 16 16 O -0.98 -35.02 17.65 -128.00 -2.26 -37.28 16 17 C -0.45 -15.54 6.77 84.69 0.57 -14.97 16 18 C -0.09 -2.26 9.57 22.36 0.21 -2.05 16 19 C -0.05 -1.16 9.94 22.48 0.22 -0.93 16 20 C -0.10 -2.62 6.25 22.41 0.14 -2.48 16 21 Br 0.00 -0.09 33.74 -20.37 -0.69 -0.78 16 22 C 0.10 3.26 10.95 84.70 0.93 4.19 16 23 N -0.38 -14.77 8.40 -193.24 -1.62 -16.39 16 24 H 0.03 1.46 8.14 -2.39 -0.02 1.44 16 25 H 0.04 1.70 7.63 -2.38 -0.02 1.68 16 26 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.08 4.02 5.96 -2.39 -0.01 4.01 16 29 H 0.26 13.65 8.31 -92.71 -0.77 12.88 16 30 H 0.42 14.21 8.96 -96.75 -0.87 13.34 16 31 H 0.18 3.53 7.94 -2.91 -0.02 3.50 16 32 H 0.20 2.42 8.06 -2.91 -0.02 2.40 16 33 H 0.17 5.40 8.06 -2.91 -0.02 5.38 16 Total: -1.00 -63.71 317.94 -1.72 -65.42 By element: Atomic # 1 Polarization: 18.02 SS G_CDS: 0.28 Total: 18.30 kcal Atomic # 6 Polarization: -39.75 SS G_CDS: 3.67 Total: -36.08 kcal Atomic # 7 Polarization: -107.00 SS G_CDS: -2.19 Total: -109.20 kcal Atomic # 8 Polarization: -76.51 SS G_CDS: -4.50 Total: -81.02 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: 100.21 SS G_CDS: -0.32 Total: 99.89 kcal Atomic # 35 Polarization: -0.09 SS G_CDS: -0.69 Total: -0.78 kcal Total: -63.71 -1.72 -65.42 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000273948382.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.052 kcal (2) G-P(sol) polarization free energy of solvation -63.706 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.654 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.424 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.372 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds