Wall clock time and date at job start Wed Apr 1 2020 05:24:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86789 * 120.00274 * 2 1 4 4 H 1.48497 * 109.47613 * 270.00055 * 3 2 1 5 5 H 1.48506 * 109.47161 * 30.00230 * 3 2 1 6 6 H 1.48507 * 109.47227 * 149.99877 * 3 2 1 7 7 C 1.37877 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99957 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00174 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47371 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47243 * 179.97438 * 10 9 7 12 12 C 1.34770 * 119.99906 * 179.97438 * 11 10 9 13 13 O 1.21358 * 120.00211 * 359.72831 * 12 11 10 14 14 C 1.49344 * 119.99964 * 179.97438 * 12 11 10 15 15 O 1.21385 * 120.00098 * 359.73258 * 14 12 11 16 16 N 1.34781 * 120.00184 * 179.72512 * 14 12 11 17 17 C 1.39800 * 120.00005 * 175.38698 * 16 14 12 18 18 C 1.38904 * 120.03967 * 214.82805 * 17 16 14 19 19 C 1.38215 * 119.95923 * 179.74504 * 18 17 16 20 20 Cl 1.73598 * 119.97912 * 180.25258 * 19 18 17 21 21 C 1.38567 * 120.04064 * 0.52519 * 19 18 17 22 22 F 1.35094 * 119.96157 * 179.70337 * 21 19 18 23 23 C 1.38580 * 120.08001 * 359.72716 * 21 19 18 24 24 Cl 1.73599 * 119.97944 * 179.97438 * 23 21 19 25 25 C 1.38207 * 120.03746 * 0.02562 * 23 21 19 26 26 H 0.97001 * 119.99593 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47146 * 59.99694 * 9 7 2 28 28 H 1.09006 * 109.47005 * 299.99725 * 9 7 2 29 29 H 1.08996 * 109.47099 * 59.99833 * 10 9 7 30 30 H 1.09006 * 109.46968 * 299.99915 * 10 9 7 31 31 H 0.97002 * 119.99888 * 0.02562 * 11 10 9 32 32 H 0.97000 * 119.99801 * 355.38356 * 16 14 12 33 33 H 1.07998 * 120.01758 * 359.97414 * 18 17 16 34 34 H 1.08000 * 120.01745 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 7 5.4865 -2.6368 -0.0001 12 6 6.1602 -3.8040 0.0003 13 8 5.5534 -4.8550 0.0057 14 6 7.6537 -3.8041 -0.0003 15 8 8.2607 -2.7530 -0.0061 16 7 8.3275 -4.9714 0.0057 17 6 9.7221 -4.9739 -0.0923 18 6 10.3690 -5.9925 -0.7803 19 6 11.7475 -5.9905 -0.8806 20 17 12.5561 -7.2598 -1.7460 21 6 12.4848 -4.9792 -0.2861 22 9 13.8325 -4.9821 -0.3800 23 6 11.8415 -3.9649 0.4052 24 17 12.7679 -2.6995 1.1497 25 6 10.4629 -3.9609 0.5032 26 1 -0.4849 0.8401 -0.0004 27 1 3.8745 -0.6810 0.8905 28 1 3.8752 -0.6798 -0.8895 29 1 3.6584 -3.1504 -0.8903 30 1 3.6577 -3.1508 0.8897 31 1 5.9715 -1.7968 0.0003 32 1 7.8449 -5.8096 0.0780 33 1 9.7949 -6.7835 -1.2398 34 1 9.9619 -3.1705 1.0424 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000277079192.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:55 Heat of formation + Delta-G solvation = -97.251281 kcal Electronic energy + Delta-G solvation = -24118.627488 eV Core-core repulsion = 19825.161641 eV Total energy + Delta-G solvation = -4293.465848 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.023 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.49777 -41.45882 -39.78587 -38.51566 -37.38633 -37.01324 -35.73674 -34.86851 -32.91311 -31.49229 -30.48165 -30.04203 -26.29572 -24.49283 -24.03709 -22.62102 -21.03135 -20.64538 -19.18110 -18.43908 -18.06783 -17.31265 -17.07299 -16.59672 -16.37408 -16.10082 -15.55644 -15.24258 -15.06032 -14.62780 -14.26787 -14.23727 -14.03692 -13.86962 -13.79498 -13.28054 -12.95446 -12.68580 -12.54896 -12.04981 -11.83878 -11.73933 -11.60753 -11.47852 -11.33937 -10.64711 -10.53804 -10.42839 -10.03774 -9.74950 -9.47519 -9.42103 -8.97163 -8.82400 -8.68133 -6.18445 -4.19846 0.09735 0.20669 1.07199 1.17754 1.60270 2.00007 2.58980 3.04612 3.21688 3.30269 3.30694 3.33864 3.37285 4.06126 4.27386 4.29609 4.31880 4.45908 4.50719 5.05386 5.14470 5.23365 5.36414 5.38131 5.82362 5.94250 5.98006 6.27577 6.36745 6.48688 6.92581 7.08411 7.17967 7.47901 7.56097 7.94382 8.34352 8.84345 9.41092 10.94165 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.018781 B = 0.002050 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.516024 B =13653.087519 C =14837.622543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.896 5.896 2 C 0.071 3.929 3 Si 0.881 3.119 4 H -0.276 1.276 5 H -0.286 1.286 6 H -0.265 1.265 7 C -0.526 4.526 8 H 0.077 0.923 9 C -0.024 4.024 10 C 0.126 3.874 11 N -0.685 5.685 12 C 0.503 3.497 13 O -0.521 6.521 14 C 0.512 3.488 15 O -0.494 6.494 16 N -0.646 5.646 17 C 0.164 3.836 18 C -0.101 4.101 19 C -0.045 4.045 20 Cl -0.030 7.030 21 C 0.104 3.896 22 F -0.113 7.113 23 C -0.044 4.044 24 Cl -0.028 7.028 25 C -0.082 4.082 26 H 0.266 0.734 27 H 0.025 0.975 28 H 0.021 0.979 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.410 0.590 32 H 0.430 0.570 33 H 0.158 0.842 34 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 27.282 -12.515 -0.133 30.016 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.132 4.132 3 Si 0.708 3.292 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.190 1.190 7 C -0.564 4.564 8 H 0.095 0.905 9 C -0.061 4.061 10 C 0.005 3.995 11 N -0.336 5.336 12 C 0.282 3.718 13 O -0.399 6.399 14 C 0.295 3.705 15 O -0.367 6.367 16 N -0.294 5.294 17 C 0.069 3.931 18 C -0.122 4.122 19 C -0.073 4.073 20 Cl -0.001 7.001 21 C 0.082 3.918 22 F -0.091 7.091 23 C -0.073 4.073 24 Cl 0.002 6.998 25 C -0.103 4.103 26 H 0.076 0.924 27 H 0.043 0.957 28 H 0.039 0.961 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.246 0.754 32 H 0.270 0.730 33 H 0.176 0.824 34 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 27.194 -12.345 -0.154 29.866 hybrid contribution 0.731 0.907 -0.069 1.167 sum 27.926 -11.438 -0.224 30.178 Atomic orbital electron populations 1.69898 1.06292 1.27199 1.49970 1.24989 0.94782 0.99198 0.94206 0.86767 0.80309 0.83482 0.78640 1.20135 1.21189 1.18966 1.20846 0.88332 0.94983 1.52269 0.90504 1.19831 0.98212 0.90792 0.97312 1.21794 0.74145 1.01114 1.02430 1.46233 1.09789 1.07800 1.69770 1.19540 0.86659 0.85620 0.80027 1.90790 1.69139 1.30845 1.49083 1.20794 0.89777 0.83563 0.76395 1.90787 1.69718 1.30871 1.45279 1.43132 1.03977 1.11046 1.71232 1.17304 0.83080 0.95814 0.96948 1.20800 0.91830 1.00568 0.99047 1.20432 0.92636 0.92893 1.01378 1.98421 1.78942 1.48431 1.74273 1.16994 0.78097 0.95398 1.01279 1.91585 1.27291 1.96045 1.94226 1.20605 0.92621 0.92693 1.01369 1.98424 1.72510 1.48783 1.80118 1.21255 0.90518 1.00050 0.98500 0.92435 0.95666 0.96099 0.91000 0.90944 0.75395 0.73007 0.82444 0.81399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.46 13.96 55.43 0.77 -25.69 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 20.46 27.47 -169.99 -4.67 15.79 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 6 H -0.27 -5.82 6.54 56.52 0.37 -5.45 16 7 C -0.53 -14.01 9.66 -34.44 -0.33 -14.35 16 8 H 0.08 2.21 7.99 -52.49 -0.42 1.79 16 9 C -0.02 -0.51 4.16 -27.88 -0.12 -0.62 16 10 C 0.13 2.30 5.61 -4.04 -0.02 2.28 16 11 N -0.68 -10.21 5.55 -60.76 -0.34 -10.55 16 12 C 0.50 6.95 7.89 -11.64 -0.09 6.86 16 13 O -0.52 -8.20 16.48 5.49 0.09 -8.10 16 14 C 0.51 5.85 7.73 -11.63 -0.09 5.76 16 15 O -0.49 -6.35 13.91 5.47 0.08 -6.27 16 16 N -0.65 -5.52 5.32 -10.29 -0.05 -5.58 16 17 C 0.16 1.36 6.30 -83.73 -0.53 0.84 16 18 C -0.10 -0.69 9.75 -39.34 -0.38 -1.08 16 19 C -0.04 -0.35 6.32 -39.47 -0.25 -0.60 16 20 Cl -0.03 -0.22 28.61 -51.86 -1.48 -1.71 16 21 C 0.10 0.94 7.25 -39.33 -0.29 0.66 16 22 F -0.11 -1.10 16.39 2.25 0.04 -1.06 16 23 C -0.04 -0.41 6.32 -39.47 -0.25 -0.66 16 24 Cl -0.03 -0.25 28.61 -51.86 -1.48 -1.74 16 25 C -0.08 -0.76 8.47 -39.34 -0.33 -1.10 16 26 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 27 H 0.03 0.53 7.20 -51.93 -0.37 0.16 16 28 H 0.02 0.44 7.57 -51.93 -0.39 0.04 16 29 H 0.07 1.35 8.14 -51.93 -0.42 0.93 16 30 H 0.07 1.36 8.14 -51.93 -0.42 0.93 16 31 H 0.41 5.58 7.94 -40.82 -0.32 5.26 16 32 H 0.43 2.88 8.30 -40.82 -0.34 2.54 16 33 H 0.16 0.71 8.06 -52.49 -0.42 0.28 16 34 H 0.17 1.69 6.22 -52.49 -0.33 1.36 16 LS Contribution 339.85 15.07 5.12 5.12 Total: -1.00 -29.95 339.85 -7.32 -37.27 By element: Atomic # 1 Polarization: 5.29 SS G_CDS: -2.61 Total: 2.68 kcal Atomic # 6 Polarization: 2.62 SS G_CDS: -2.78 Total: -0.16 kcal Atomic # 7 Polarization: -42.19 SS G_CDS: 0.38 Total: -41.81 kcal Atomic # 8 Polarization: -14.54 SS G_CDS: 0.17 Total: -14.37 kcal Atomic # 9 Polarization: -1.10 SS G_CDS: 0.04 Total: -1.06 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.67 Total: 15.79 kcal Atomic # 17 Polarization: -0.48 SS G_CDS: -2.97 Total: -3.44 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -29.95 -7.32 -37.27 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277079192.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.984 kcal (2) G-P(sol) polarization free energy of solvation -29.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds