Wall clock time and date at job start Wed Apr 1 2020 05:24:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86789 * 120.00274 * 2 1 4 4 H 1.48497 * 109.47613 * 270.00055 * 3 2 1 5 5 H 1.48506 * 109.47161 * 30.00230 * 3 2 1 6 6 H 1.48507 * 109.47227 * 149.99877 * 3 2 1 7 7 C 1.37877 * 119.99716 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99957 * 359.97438 * 7 2 1 9 9 C 1.50694 * 120.00174 * 180.02562 * 7 2 1 10 10 C 1.53002 * 109.47371 * 179.97438 * 9 7 2 11 11 N 1.46503 * 109.47243 * 179.97438 * 10 9 7 12 12 C 1.34770 * 119.99906 * 179.97438 * 11 10 9 13 13 O 1.21358 * 120.00211 * 359.72831 * 12 11 10 14 14 C 1.49344 * 119.99964 * 179.97438 * 12 11 10 15 15 O 1.21385 * 120.00098 * 359.73258 * 14 12 11 16 16 N 1.34781 * 120.00184 * 179.72512 * 14 12 11 17 17 C 1.39800 * 120.00005 * 175.38698 * 16 14 12 18 18 C 1.38904 * 120.03967 * 214.82805 * 17 16 14 19 19 C 1.38215 * 119.95923 * 179.74504 * 18 17 16 20 20 Cl 1.73598 * 119.97912 * 180.25258 * 19 18 17 21 21 C 1.38567 * 120.04064 * 0.52519 * 19 18 17 22 22 F 1.35094 * 119.96157 * 179.70337 * 21 19 18 23 23 C 1.38580 * 120.08001 * 359.72716 * 21 19 18 24 24 Cl 1.73599 * 119.97944 * 179.97438 * 23 21 19 25 25 C 1.38207 * 120.03746 * 0.02562 * 23 21 19 26 26 H 0.97001 * 119.99593 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.47146 * 59.99694 * 9 7 2 28 28 H 1.09006 * 109.47005 * 299.99725 * 9 7 2 29 29 H 1.08996 * 109.47099 * 59.99833 * 10 9 7 30 30 H 1.09006 * 109.46968 * 299.99915 * 10 9 7 31 31 H 0.97002 * 119.99888 * 0.02562 * 11 10 9 32 32 H 0.97000 * 119.99801 * 355.38356 * 16 14 12 33 33 H 1.07998 * 120.01758 * 359.97414 * 18 17 16 34 34 H 1.08000 * 120.01745 * 179.97438 * 25 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4968 2.0464 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1942 0.0000 10 6 4.0214 -2.6367 -0.0001 11 7 5.4865 -2.6368 -0.0001 12 6 6.1602 -3.8040 0.0003 13 8 5.5534 -4.8550 0.0057 14 6 7.6537 -3.8041 -0.0003 15 8 8.2607 -2.7530 -0.0061 16 7 8.3275 -4.9714 0.0057 17 6 9.7221 -4.9739 -0.0923 18 6 10.3690 -5.9925 -0.7803 19 6 11.7475 -5.9905 -0.8806 20 17 12.5561 -7.2598 -1.7460 21 6 12.4848 -4.9792 -0.2861 22 9 13.8325 -4.9821 -0.3800 23 6 11.8415 -3.9649 0.4052 24 17 12.7679 -2.6995 1.1497 25 6 10.4629 -3.9609 0.5032 26 1 -0.4849 0.8401 -0.0004 27 1 3.8745 -0.6810 0.8905 28 1 3.8752 -0.6798 -0.8895 29 1 3.6584 -3.1504 -0.8903 30 1 3.6577 -3.1508 0.8897 31 1 5.9715 -1.7968 0.0003 32 1 7.8449 -5.8096 0.0780 33 1 9.7949 -6.7835 -1.2398 34 1 9.9619 -3.1705 1.0424 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000277079192.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:54 Heat of formation + Delta-G solvation = -117.146103 kcal Electronic energy + Delta-G solvation = -24119.490192 eV Core-core repulsion = 19825.161641 eV Total energy + Delta-G solvation = -4294.328552 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.023 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.21530 -42.34070 -40.70742 -39.46813 -38.03550 -37.71162 -36.96351 -35.87137 -34.77915 -32.19457 -32.09233 -30.83248 -27.70303 -25.71399 -24.75771 -23.55282 -22.63275 -21.63618 -20.13872 -19.21699 -19.04003 -18.79895 -18.08505 -17.62792 -17.17702 -17.09824 -16.42717 -16.28926 -16.16789 -16.01156 -15.53639 -15.23419 -14.92369 -14.87682 -14.58852 -14.56102 -14.40022 -13.60522 -13.38330 -13.25652 -13.06517 -12.91258 -12.62167 -12.41571 -12.21963 -12.19035 -12.14013 -11.77478 -11.49632 -11.36689 -10.86669 -10.77966 -10.26720 -10.12341 -9.53277 -8.29068 -6.35662 -0.61653 -0.43650 0.21606 0.42056 0.93266 1.08308 1.40892 1.42439 1.53058 1.82312 2.11389 2.37206 2.40797 2.67222 3.06538 3.22473 3.43106 3.65303 3.77045 3.83196 4.27127 4.41493 4.43201 4.58738 4.65139 4.70822 4.74722 4.96380 5.22272 5.30794 5.39277 5.59427 5.69623 6.18019 6.24076 6.49844 6.71795 6.82495 7.29044 8.87061 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.018781 B = 0.002050 C = 0.001887 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1490.516024 B =13653.087519 C =14837.622543 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.006 3.994 3 Si 0.952 3.048 4 H -0.267 1.267 5 H -0.288 1.288 6 H -0.239 1.239 7 C -0.534 4.534 8 H 0.037 0.963 9 C -0.019 4.019 10 C 0.142 3.858 11 N -0.684 5.684 12 C 0.508 3.492 13 O -0.540 6.540 14 C 0.523 3.477 15 O -0.507 6.507 16 N -0.628 5.628 17 C 0.159 3.841 18 C -0.082 4.082 19 C -0.046 4.046 20 Cl -0.023 7.023 21 C 0.098 3.902 22 F -0.119 7.119 23 C -0.051 4.051 24 Cl -0.032 7.032 25 C -0.087 4.087 26 H 0.267 0.733 27 H 0.036 0.964 28 H 0.035 0.965 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.419 0.581 32 H 0.441 0.559 33 H 0.186 0.814 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 29.564 -12.631 -0.474 32.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.588 5.588 2 C -0.191 4.191 3 Si 0.775 3.225 4 H -0.192 1.192 5 H -0.214 1.214 6 H -0.162 1.162 7 C -0.573 4.573 8 H 0.055 0.945 9 C -0.057 4.057 10 C 0.019 3.981 11 N -0.336 5.336 12 C 0.288 3.712 13 O -0.418 6.418 14 C 0.305 3.695 15 O -0.381 6.381 16 N -0.277 5.277 17 C 0.063 3.937 18 C -0.102 4.102 19 C -0.075 4.075 20 Cl 0.006 6.994 21 C 0.077 3.923 22 F -0.098 7.098 23 C -0.080 4.080 24 Cl -0.003 7.003 25 C -0.107 4.107 26 H 0.076 0.924 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.081 0.919 30 H 0.081 0.919 31 H 0.256 0.744 32 H 0.283 0.717 33 H 0.204 0.796 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 29.526 -12.503 -0.495 32.068 hybrid contribution 0.028 0.788 0.025 0.789 sum 29.554 -11.715 -0.470 31.794 Atomic orbital electron populations 1.70062 1.08416 1.28321 1.52006 1.25996 0.95614 1.03594 0.93905 0.85642 0.79719 0.77949 0.79229 1.19212 1.21447 1.16169 1.21209 0.91283 0.93516 1.51272 0.94472 1.19705 0.94667 0.93057 0.98226 1.21310 0.76242 0.98889 1.01632 1.45961 1.08355 1.08846 1.70415 1.19849 0.87802 0.84749 0.78829 1.90787 1.69973 1.31440 1.49599 1.20146 0.88342 0.84181 0.76823 1.90801 1.69453 1.31520 1.46340 1.42929 1.04138 1.10586 1.70053 1.17302 0.82583 0.96196 0.97576 1.21011 0.91439 1.00275 0.97510 1.20493 0.92983 0.92772 1.01265 1.98429 1.78929 1.47996 1.74062 1.17139 0.77942 0.95751 1.01507 1.91569 1.27788 1.96104 1.94292 1.20600 0.92635 0.92868 1.01861 1.98420 1.72621 1.49032 1.80242 1.21215 0.90574 1.00219 0.98728 0.92389 0.94534 0.94713 0.91949 0.91888 0.74359 0.71746 0.79629 0.82192 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -57.45 13.96 21.45 0.30 -57.15 16 2 C 0.01 0.36 5.47 84.65 0.46 0.82 16 3 Si 0.95 41.41 27.47 68.60 1.88 43.30 16 4 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 5 H -0.29 -12.59 7.11 99.48 0.71 -11.88 16 6 H -0.24 -9.29 6.54 99.48 0.65 -8.64 16 7 C -0.53 -28.87 9.66 25.60 0.25 -28.62 16 8 H 0.04 2.23 7.99 -2.91 -0.02 2.21 16 9 C -0.02 -0.78 4.16 29.85 0.12 -0.65 16 10 C 0.14 5.06 5.61 86.38 0.48 5.55 16 11 N -0.68 -19.22 5.55 -464.52 -2.58 -21.79 16 12 C 0.51 13.15 7.89 87.24 0.69 13.84 16 13 O -0.54 -16.19 16.48 -3.27 -0.05 -16.25 16 14 C 0.52 10.82 7.73 87.24 0.67 11.50 16 15 O -0.51 -12.00 13.91 -3.36 -0.05 -12.05 16 16 N -0.63 -9.16 5.32 -304.81 -1.62 -10.78 16 17 C 0.16 2.24 6.30 38.19 0.24 2.49 16 18 C -0.08 -0.87 9.75 22.42 0.22 -0.66 16 19 C -0.05 -0.63 6.32 22.34 0.14 -0.49 16 20 Cl -0.02 -0.30 28.61 -2.72 -0.08 -0.38 16 21 C 0.10 1.63 7.25 22.43 0.16 1.79 16 22 F -0.12 -2.18 16.39 44.97 0.74 -1.45 16 23 C -0.05 -0.88 6.32 22.34 0.14 -0.74 16 24 Cl -0.03 -0.57 28.61 -2.72 -0.08 -0.65 16 25 C -0.09 -1.47 8.47 22.42 0.19 -1.28 16 26 H 0.27 15.12 8.31 -92.71 -0.77 14.35 16 27 H 0.04 1.45 7.20 -2.39 -0.02 1.43 16 28 H 0.03 1.36 7.57 -2.38 -0.02 1.34 16 29 H 0.06 2.33 8.14 -2.39 -0.02 2.31 16 30 H 0.06 2.35 8.14 -2.38 -0.02 2.34 16 31 H 0.42 10.43 7.94 -92.71 -0.74 9.69 16 32 H 0.44 4.67 8.30 -92.71 -0.77 3.90 16 33 H 0.19 0.92 8.06 -2.91 -0.02 0.89 16 34 H 0.16 3.01 6.22 -2.91 -0.02 2.99 16 Total: -1.00 -65.10 339.85 1.89 -63.21 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -0.35 Total: 10.43 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 3.78 Total: 3.55 kcal Atomic # 7 Polarization: -85.82 SS G_CDS: -3.90 Total: -89.72 kcal Atomic # 8 Polarization: -28.19 SS G_CDS: -0.10 Total: -28.29 kcal Atomic # 9 Polarization: -2.18 SS G_CDS: 0.74 Total: -1.45 kcal Atomic # 14 Polarization: 41.41 SS G_CDS: 1.88 Total: 43.30 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.16 Total: -1.02 kcal Total: -65.10 1.89 -63.21 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000277079192.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.932 kcal (2) G-P(sol) polarization free energy of solvation -65.105 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.890 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds