Wall clock time and date at job start Wed Apr 1 2020 05:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00081 * 2 1 4 4 H 1.48502 * 109.47089 * 240.00193 * 3 2 1 5 5 H 1.48498 * 109.46916 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47188 * 119.99884 * 3 2 1 7 7 C 1.37872 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99713 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00117 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46769 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.46548 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99558 * 180.02562 * 11 10 9 13 13 O 1.21716 * 119.99987 * 359.97438 * 12 11 10 14 14 C 1.46495 * 119.99650 * 179.97438 * 12 11 10 15 15 S 1.75820 * 125.45340 * 6.12792 * 14 12 11 16 16 C 1.70622 * 91.57221 * 180.02562 * 15 14 12 17 17 Br 1.89099 * 124.53185 * 180.02562 * 16 15 14 18 18 C 1.33973 * 110.93481 * 359.97438 * 16 15 14 19 19 C 1.36685 * 125.45010 * 186.17022 * 14 12 11 20 20 N 1.48022 * 123.34149 * 359.92855 * 19 14 12 21 21 O 1.21803 * 119.99542 * 219.25417 * 20 19 14 22 22 O 1.21795 * 120.00200 * 39.26085 * 20 19 14 23 23 H 0.97005 * 120.00021 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47023 * 60.00439 * 9 7 2 25 25 H 1.08993 * 109.46983 * 299.99343 * 9 7 2 26 26 H 1.08997 * 109.47401 * 60.00066 * 10 9 7 27 27 H 1.08997 * 109.47466 * 299.99571 * 10 9 7 28 28 H 0.96992 * 120.00141 * 359.97438 * 11 10 9 29 29 H 1.07997 * 122.45105 * 180.26989 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5126 -4.9308 -0.0001 12 6 2.1866 -6.0980 0.0003 13 8 3.4037 -6.0980 0.0007 14 6 1.4540 -7.3667 0.0003 15 16 -0.2891 -7.5378 -0.1532 16 6 -0.1785 -9.2373 -0.0506 17 35 -1.6567 -10.4142 -0.1254 18 6 1.0959 -9.6266 0.0890 19 6 2.0163 -8.6067 0.1203 20 7 3.4723 -8.8291 0.2677 21 8 4.0064 -9.7633 -0.3030 22 8 4.1361 -8.0781 0.9595 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6044 0.8905 27 1 2.8719 -3.6044 -0.8894 28 1 0.5427 -4.9308 0.0000 29 1 1.3791 -10.6658 0.1674 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000278086466.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:27 Heat of formation + Delta-G solvation = -3.458421 kcal Electronic energy + Delta-G solvation = -19329.286937 eV Core-core repulsion = 15815.131484 eV Total energy + Delta-G solvation = -3514.155453 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.961 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -42.16765 -39.80284 -38.32559 -36.42162 -35.19477 -33.12448 -32.83662 -30.50647 -29.45505 -27.83918 -24.99155 -24.01245 -22.14322 -21.10902 -20.64137 -19.24908 -18.61288 -18.00166 -17.17547 -16.55717 -16.23322 -15.52601 -15.35234 -15.19743 -14.55169 -14.37195 -13.74322 -13.38935 -13.25301 -12.38442 -12.31361 -11.71404 -11.50050 -11.36799 -11.22854 -11.13775 -11.10542 -11.00085 -10.74187 -10.50119 -10.20804 -9.72323 -9.70514 -9.61602 -9.40237 -8.85213 -8.49966 -6.18253 -4.21756 -0.78148 0.00255 0.40536 0.50700 0.73517 1.47529 1.63246 2.83078 2.95674 3.26872 3.30951 3.34776 4.00498 4.23404 4.36262 4.53545 4.72833 4.96316 5.19268 6.06892 6.14728 6.26335 6.41772 6.57040 7.31576 7.44857 7.49862 7.65593 7.78473 8.02224 8.18828 8.83347 9.43858 10.93170 Molecular weight = 347.96amu Principal moments of inertia in cm(-1) A = 0.015537 B = 0.002817 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.739476 B = 9935.856652 C =11669.648989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.060 3.940 3 Si 0.899 3.101 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.524 4.524 8 H 0.061 0.939 9 C 0.012 3.988 10 C 0.120 3.880 11 N -0.705 5.705 12 C 0.560 3.440 13 O -0.490 6.490 14 C -0.185 4.185 15 S 0.387 5.613 16 C -0.244 4.244 17 Br 0.046 6.954 18 C -0.067 4.067 19 C 0.003 3.997 20 N 0.034 4.966 21 O -0.171 6.171 22 O -0.077 6.077 23 H 0.264 0.736 24 H 0.024 0.976 25 H 0.024 0.976 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.395 0.605 29 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.995 -22.931 -0.163 24.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.532 5.532 2 C -0.142 4.142 3 Si 0.726 3.274 4 H -0.201 1.201 5 H -0.212 1.212 6 H -0.200 1.200 7 C -0.563 4.563 8 H 0.079 0.921 9 C -0.025 4.025 10 C -0.001 4.001 11 N -0.356 5.356 12 C 0.341 3.659 13 O -0.365 6.365 14 C -0.311 4.311 15 S 0.654 5.346 16 C -0.444 4.444 17 Br 0.129 6.871 18 C -0.100 4.100 19 C -0.095 4.095 20 N 0.562 4.438 21 O -0.380 6.380 22 O -0.311 6.311 23 H 0.073 0.927 24 H 0.042 0.958 25 H 0.043 0.957 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.229 0.771 29 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -9.794 -22.183 -0.517 24.255 hybrid contribution 1.614 -0.096 0.194 1.628 sum -8.180 -22.279 -0.323 23.736 Atomic orbital electron populations 1.69935 1.06108 1.27156 1.50014 1.24990 0.94925 0.99497 0.94788 0.86537 0.79508 0.82438 0.78882 1.20056 1.21211 1.20008 1.20964 0.93290 0.90136 1.51893 0.92104 1.19353 0.94150 0.90983 0.98030 1.21969 0.96227 0.80089 1.01791 1.46285 1.10228 1.06376 1.72681 1.16786 0.87391 0.81903 0.79807 1.91012 1.11512 1.86074 1.47912 1.25574 1.00205 0.97882 1.07391 1.83622 0.96393 0.94428 1.60204 1.25649 0.98362 1.02617 1.17757 1.96862 1.33916 1.58775 1.97536 1.19378 0.89099 1.01424 1.00064 1.20168 0.83587 0.93186 1.12595 1.42766 1.01311 0.99994 0.99740 1.94541 1.72507 1.23050 1.47856 1.94680 1.61603 1.40975 1.33880 0.92689 0.95816 0.95721 0.91426 0.91682 0.77146 0.80942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.09 13.29 55.43 0.74 -24.35 15 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 15 3 Si 0.90 20.75 29.54 -169.99 -5.02 15.73 15 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 15 5 H -0.29 -6.55 7.11 56.52 0.40 -6.14 15 6 H -0.27 -6.27 7.11 56.52 0.40 -5.87 15 7 C -0.52 -13.89 9.11 -34.44 -0.31 -14.20 15 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 15 9 C 0.01 0.28 5.09 -27.88 -0.14 0.14 15 10 C 0.12 2.36 5.61 -4.04 -0.02 2.34 15 11 N -0.71 -11.29 5.55 -61.67 -0.34 -11.63 15 12 C 0.56 9.19 7.70 -12.93 -0.10 9.09 15 13 O -0.49 -9.87 13.71 -18.76 -0.26 -10.12 15 14 C -0.18 -2.39 6.43 -36.82 -0.24 -2.62 15 15 S 0.39 3.30 22.16 -107.50 -2.38 0.91 15 16 C -0.24 -2.06 6.70 29.23 0.20 -1.87 15 17 Br 0.05 0.31 34.04 -68.01 -2.32 -2.00 15 18 C -0.07 -0.66 9.88 -41.38 -0.41 -1.07 15 19 C 0.00 0.04 6.51 -80.81 -0.53 -0.48 15 20 N 0.03 0.54 4.21 33.54 0.14 0.68 15 21 O -0.17 -2.73 19.13 -29.46 -0.56 -3.29 15 22 O -0.08 -1.40 16.13 -37.04 -0.60 -2.00 15 23 H 0.26 7.03 8.31 -40.82 -0.34 6.69 15 24 H 0.02 0.57 8.14 -51.93 -0.42 0.14 15 25 H 0.02 0.59 8.14 -51.93 -0.42 0.17 15 26 H 0.07 1.38 8.14 -51.93 -0.42 0.96 15 27 H 0.06 1.32 8.14 -51.93 -0.42 0.90 15 28 H 0.39 5.24 7.60 -40.82 -0.31 4.93 15 29 H 0.17 1.40 8.06 -52.49 -0.42 0.97 15 LS Contribution 305.84 15.07 4.61 4.61 Total: -1.00 -30.95 305.84 -9.61 -40.56 By element: Atomic # 1 Polarization: 0.01 SS G_CDS: -1.97 Total: -1.96 kcal Atomic # 6 Polarization: -5.48 SS G_CDS: -1.65 Total: -7.14 kcal Atomic # 7 Polarization: -35.84 SS G_CDS: 0.54 Total: -35.31 kcal Atomic # 8 Polarization: -13.99 SS G_CDS: -1.42 Total: -15.41 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.73 kcal Atomic # 16 Polarization: 3.30 SS G_CDS: -2.38 Total: 0.91 kcal Atomic # 35 Polarization: 0.31 SS G_CDS: -2.32 Total: -2.00 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -30.95 -9.61 -40.56 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278086466.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.097 kcal (2) G-P(sol) polarization free energy of solvation -30.947 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.458 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds