Wall clock time and date at job start Wed Apr 1 2020 05:08:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86799 * 120.00081 * 2 1 4 4 H 1.48502 * 109.47089 * 240.00193 * 3 2 1 5 5 H 1.48498 * 109.46916 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47188 * 119.99884 * 3 2 1 7 7 C 1.37872 * 119.99777 * 179.97438 * 2 1 3 8 8 H 1.08004 * 119.99713 * 179.97438 * 7 2 1 9 9 C 1.50705 * 120.00117 * 0.02562 * 7 2 1 10 10 C 1.53005 * 109.46769 * 179.97438 * 9 7 2 11 11 N 1.46505 * 109.46548 * 180.02562 * 10 9 7 12 12 C 1.34779 * 119.99558 * 180.02562 * 11 10 9 13 13 O 1.21716 * 119.99987 * 359.97438 * 12 11 10 14 14 C 1.46495 * 119.99650 * 179.97438 * 12 11 10 15 15 S 1.75820 * 125.45340 * 6.12792 * 14 12 11 16 16 C 1.70622 * 91.57221 * 180.02562 * 15 14 12 17 17 Br 1.89099 * 124.53185 * 180.02562 * 16 15 14 18 18 C 1.33973 * 110.93481 * 359.97438 * 16 15 14 19 19 C 1.36685 * 125.45010 * 186.17022 * 14 12 11 20 20 N 1.48022 * 123.34149 * 359.92855 * 19 14 12 21 21 O 1.21803 * 119.99542 * 219.25417 * 20 19 14 22 22 O 1.21795 * 120.00200 * 39.26085 * 20 19 14 23 23 H 0.97005 * 120.00021 * 359.97438 * 1 2 3 24 24 H 1.09001 * 109.47023 * 60.00439 * 9 7 2 25 25 H 1.08993 * 109.46983 * 299.99343 * 9 7 2 26 26 H 1.08997 * 109.47401 * 60.00066 * 10 9 7 27 27 H 1.08997 * 109.47466 * 299.99571 * 10 9 7 28 28 H 0.96992 * 120.00141 * 359.97438 * 11 10 9 29 29 H 1.07997 * 122.45105 * 180.26989 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2509 -2.4992 0.0005 10 6 2.2452 -3.6621 0.0005 11 7 1.5126 -4.9308 -0.0001 12 6 2.1866 -6.0980 0.0003 13 8 3.4037 -6.0980 0.0007 14 6 1.4540 -7.3667 0.0003 15 16 -0.2891 -7.5378 -0.1532 16 6 -0.1785 -9.2373 -0.0506 17 35 -1.6567 -10.4142 -0.1254 18 6 1.0959 -9.6266 0.0890 19 6 2.0163 -8.6067 0.1203 20 7 3.4723 -8.8291 0.2677 21 8 4.0064 -9.7633 -0.3030 22 8 4.1361 -8.0781 0.9595 23 1 -0.4850 0.8401 0.0004 24 1 0.6247 -2.5571 -0.8897 25 1 0.6241 -2.5567 0.8903 26 1 2.8719 -3.6044 0.8905 27 1 2.8719 -3.6044 -0.8894 28 1 0.5427 -4.9308 0.0000 29 1 1.3791 -10.6658 0.1674 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000278086466.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:08:27 Heat of formation + Delta-G solvation = -22.010802 kcal Electronic energy + Delta-G solvation = -19330.091429 eV Core-core repulsion = 15815.131484 eV Total energy + Delta-G solvation = -3514.959945 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.961 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.33071 -41.09018 -39.30625 -37.65022 -36.77619 -34.94826 -33.71335 -32.01148 -30.55925 -29.08323 -26.75262 -25.01470 -23.55557 -22.65082 -21.74805 -20.41176 -19.80765 -19.07822 -18.60088 -18.15555 -17.37241 -16.86031 -16.67890 -16.45978 -16.04187 -15.48448 -15.10215 -14.73759 -14.36558 -14.16140 -13.29345 -13.14207 -12.96634 -12.76107 -12.58733 -12.45992 -12.41694 -12.29431 -12.25510 -11.80961 -11.70603 -11.53460 -11.26760 -10.62177 -10.49814 -10.46733 -10.20227 -8.24297 -6.33906 -1.77839 -0.83358 -0.65279 -0.35080 -0.01465 0.48723 0.63272 1.43599 1.44955 1.52447 1.57641 1.72014 2.41984 3.05875 3.11242 3.21260 3.62275 3.83767 4.19938 4.39940 4.43526 4.80276 4.97385 5.06721 5.42240 5.55172 5.76015 6.10512 6.18474 6.38064 6.75149 6.82010 7.35280 8.86994 Molecular weight = 347.96amu Principal moments of inertia in cm(-1) A = 0.015537 B = 0.002817 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1801.739476 B = 9935.856652 C =11669.648989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.923 5.923 2 C 0.010 3.990 3 Si 0.961 3.039 4 H -0.270 1.270 5 H -0.281 1.281 6 H -0.270 1.270 7 C -0.547 4.547 8 H 0.059 0.941 9 C 0.022 3.978 10 C 0.139 3.861 11 N -0.699 5.699 12 C 0.563 3.437 13 O -0.534 6.534 14 C -0.224 4.224 15 S 0.480 5.520 16 C -0.238 4.238 17 Br 0.073 6.927 18 C -0.068 4.068 19 C -0.001 4.001 20 N 0.034 4.966 21 O -0.153 6.153 22 O -0.143 6.143 23 H 0.266 0.734 24 H 0.015 0.985 25 H 0.014 0.986 26 H 0.057 0.943 27 H 0.056 0.944 28 H 0.409 0.591 29 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.883 -24.020 -0.582 25.980 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.562 5.562 2 C -0.189 4.189 3 Si 0.786 3.214 4 H -0.195 1.195 5 H -0.206 1.206 6 H -0.195 1.195 7 C -0.586 4.586 8 H 0.077 0.923 9 C -0.016 4.016 10 C 0.017 3.983 11 N -0.351 5.351 12 C 0.347 3.653 13 O -0.412 6.412 14 C -0.350 4.350 15 S 0.748 5.252 16 C -0.438 4.438 17 Br 0.157 6.843 18 C -0.099 4.099 19 C -0.101 4.101 20 N 0.557 4.443 21 O -0.371 6.371 22 O -0.363 6.363 23 H 0.075 0.925 24 H 0.033 0.967 25 H 0.033 0.967 26 H 0.075 0.925 27 H 0.075 0.925 28 H 0.245 0.755 29 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -11.688 -23.200 -0.863 25.992 hybrid contribution 1.984 0.065 0.247 2.000 sum -9.705 -23.134 -0.616 25.095 Atomic orbital electron populations 1.70027 1.07346 1.28059 1.50817 1.25798 0.95792 1.02868 0.94444 0.85550 0.78348 0.78428 0.79049 1.19504 1.20644 1.19496 1.21401 0.93633 0.91803 1.51731 0.92277 1.19164 0.94190 0.91300 0.96918 1.21450 0.95238 0.80713 1.00923 1.45979 1.10805 1.05363 1.72938 1.17085 0.87056 0.82802 0.78382 1.90992 1.13620 1.86955 1.49599 1.25232 1.03100 0.95954 1.10681 1.83378 0.91598 0.93637 1.56629 1.25925 0.98765 1.03473 1.15616 1.96932 1.32052 1.58033 1.97311 1.19460 0.88740 1.01531 1.00157 1.20312 0.81655 0.94324 1.13845 1.43152 1.02751 0.99379 0.99008 1.94487 1.73583 1.22511 1.46506 1.94692 1.63121 1.42233 1.36205 0.92517 0.96709 0.96734 0.92475 0.92549 0.75454 0.79103 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -51.87 13.29 21.45 0.28 -51.59 15 2 C 0.01 0.55 5.46 84.65 0.46 1.01 15 3 Si 0.96 42.40 29.54 68.60 2.03 44.42 15 4 H -0.27 -11.60 7.11 99.48 0.71 -10.90 15 5 H -0.28 -12.06 7.11 99.48 0.71 -11.36 15 6 H -0.27 -11.62 7.11 99.48 0.71 -10.91 15 7 C -0.55 -29.27 9.11 25.60 0.23 -29.03 15 8 H 0.06 3.10 7.74 -2.91 -0.02 3.08 15 9 C 0.02 1.02 5.09 29.85 0.15 1.17 15 10 C 0.14 5.60 5.61 86.38 0.48 6.08 15 11 N -0.70 -22.44 5.55 -467.24 -2.59 -25.04 15 12 C 0.56 18.77 7.70 86.39 0.67 19.44 15 13 O -0.53 -22.48 13.71 18.49 0.25 -22.23 15 14 C -0.22 -5.59 6.43 24.06 0.15 -5.44 15 15 S 0.48 6.77 22.16 -56.49 -1.25 5.52 15 16 C -0.24 -3.23 6.70 66.85 0.45 -2.78 15 17 Br 0.07 0.74 34.04 -20.37 -0.69 0.04 15 18 C -0.07 -1.17 9.88 21.10 0.21 -0.96 15 19 C 0.00 -0.02 6.51 35.82 0.23 0.21 15 20 N 0.03 1.11 4.21 -47.80 -0.20 0.91 15 21 O -0.15 -4.86 19.13 18.88 0.36 -4.50 15 22 O -0.14 -5.50 16.13 26.14 0.42 -5.08 15 23 H 0.27 14.14 8.31 -92.70 -0.77 13.36 15 24 H 0.01 0.71 8.14 -2.39 -0.02 0.69 15 25 H 0.01 0.70 8.14 -2.39 -0.02 0.68 15 26 H 0.06 2.41 8.14 -2.39 -0.02 2.39 15 27 H 0.06 2.36 8.14 -2.39 -0.02 2.34 15 28 H 0.41 10.49 7.60 -92.71 -0.71 9.79 15 29 H 0.19 2.53 8.06 -2.91 -0.02 2.51 15 Total: -1.00 -68.33 305.84 2.17 -66.16 By element: Atomic # 1 Polarization: 1.15 SS G_CDS: 0.52 Total: 1.67 kcal Atomic # 6 Polarization: -13.33 SS G_CDS: 3.04 Total: -10.29 kcal Atomic # 7 Polarization: -73.20 SS G_CDS: -2.51 Total: -75.71 kcal Atomic # 8 Polarization: -32.85 SS G_CDS: 1.04 Total: -31.81 kcal Atomic # 14 Polarization: 42.40 SS G_CDS: 2.03 Total: 44.42 kcal Atomic # 16 Polarization: 6.77 SS G_CDS: -1.25 Total: 5.52 kcal Atomic # 35 Polarization: 0.74 SS G_CDS: -0.69 Total: 0.04 kcal Total: -68.33 2.17 -66.16 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000278086466.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.152 kcal (2) G-P(sol) polarization free energy of solvation -68.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.011 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds