Wall clock time and date at job start Wed Apr 1 2020 05:29:14
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52997 * 1
3 3 H 1.09005 * 109.47104 * 2 1
4 4 C 1.50705 * 109.47367 * 119.99806 * 2 1 3
5 5 H 1.08007 * 119.99779 * 119.99806 * 4 2 1
6 6 C 1.37879 * 120.00279 * 300.00409 * 4 2 1
7 7 N 1.31516 * 119.99465 * 359.97438 * 6 4 2
8 8 Si 1.86793 * 120.00248 * 179.97438 * 6 4 2
9 9 H 1.48503 * 109.47178 * 269.99988 * 8 6 4
10 10 H 1.48497 * 109.47146 * 29.99675 * 8 6 4
11 11 H 1.48491 * 109.47404 * 149.99949 * 8 6 4
12 12 N 1.46493 * 109.47593 * 240.00169 * 2 1 3
13 13 C 1.34777 * 120.00316 * 84.99609 * 12 2 1
14 14 O 1.21361 * 119.99673 * 0.02562 * 13 12 2
15 15 C 1.49334 * 120.00470 * 180.02562 * 13 12 2
16 16 O 1.21386 * 119.99910 * 359.97438 * 15 13 12
17 17 N 1.34777 * 120.00470 * 179.97438 * 15 13 12
18 18 C 1.39857 * 120.00543 * 175.52492 * 17 15 13
19 19 C 1.38872 * 120.06172 * 34.66942 * 18 17 15
20 20 C 1.38206 * 119.94580 * 179.97438 * 19 18 17
21 21 Cl 1.73606 * 119.95853 * 180.02562 * 20 19 18
22 22 C 1.38516 * 120.08628 * 0.02562 * 20 19 18
23 23 Cl 1.73596 * 119.93533 * 180.02562 * 22 20 19
24 24 C 1.38354 * 120.12793 * 0.02562 * 22 20 19
25 25 C 1.38298 * 120.04938 * 359.70698 * 24 22 20
26 26 F 1.35109 * 120.04055 * 180.27303 * 25 24 22
27 27 H 1.08999 * 109.47337 * 299.99680 * 1 2 3
28 28 H 1.08992 * 109.47178 * 60.00165 * 1 2 3
29 29 H 1.08997 * 109.46802 * 179.97438 * 1 2 3
30 30 H 0.97003 * 119.99472 * 179.97438 * 7 6 4
31 31 H 0.97006 * 120.00340 * 265.00407 * 12 2 1
32 32 H 0.97002 * 119.99723 * 355.52731 * 17 15 13
33 33 H 1.08002 * 120.02292 * 359.95511 * 19 18 17
34 34 H 1.07997 * 119.97702 * 179.97438 * 24 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8933 1.0277 0.0000
4 6 2.0324 -0.7104 1.2305
5 1 2.6533 -1.5885 1.1314
6 6 1.6993 -0.2394 2.4828
7 7 0.9435 0.8302 2.6034
8 14 2.3214 -1.1203 4.0080
9 1 1.3429 -2.1617 4.4119
10 1 3.6294 -1.7583 3.7122
11 1 2.4866 -0.1414 5.1123
12 7 2.0184 -0.6905 -1.1961
13 6 2.1471 -0.0182 -2.3571
14 8 1.8588 1.1594 -2.4115
15 6 2.6445 -0.7222 -3.5766
16 8 2.9333 -1.9000 -3.5221
17 7 2.7727 -0.0500 -4.7377
18 6 3.3260 -0.6835 -5.8551
19 6 3.0958 -2.0355 -6.0734
20 6 3.6434 -2.6589 -7.1786
21 17 3.3553 -4.3489 -7.4522
22 6 4.4217 -1.9370 -8.0685
23 17 5.1070 -2.7239 -9.4559
24 6 4.6541 -0.5902 -7.8537
25 6 4.1043 0.0404 -6.7524
26 9 4.3268 1.3569 -6.5458
27 1 -0.3634 0.5138 0.8900
28 1 -0.3633 0.5138 -0.8899
29 1 -0.3633 -1.0276 -0.0005
30 1 0.7089 1.1613 3.4845
31 1 2.2491 -1.6317 -1.1526
32 1 2.4812 0.8732 -4.7983
33 1 2.4897 -2.5993 -5.3797
34 1 5.2616 -0.0298 -8.5488
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000281398078.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:29:14
Heat of formation + Delta-G solvation = -98.440615 kcal
Electronic energy + Delta-G solvation = -24812.430857 eV
Core-core repulsion = 20518.913436 eV
Total energy + Delta-G solvation = -4293.517421 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 348.023 amu
Computer time = 0.41 seconds
Orbital eigenvalues (eV)
-49.41671 -41.08822 -39.50770 -38.24610 -36.99285 -36.91430 -35.50926 -34.73172
-32.51098 -31.20428 -30.03253 -29.20828 -25.48546 -25.22264 -23.84534 -22.77058
-21.05377 -19.87851 -19.17036 -18.29197 -17.79091 -17.24565 -16.58934 -16.24847
-16.09018 -15.68118 -15.61105 -15.16295 -14.63394 -14.38401 -14.28295 -14.20312
-13.66761 -13.50423 -13.24755 -12.60126 -12.56083 -12.29715 -11.93135 -11.83985
-11.66476 -11.37392 -11.30207 -11.20327 -11.05544 -10.87319 -10.57427 -10.44304
-10.32933 -9.39737 -9.27597 -9.19843 -8.70098 -8.62932 -8.24302 -6.23301
-4.33310 0.19608 0.43196 1.36237 1.54751 1.67862 2.30385 2.75640
3.20285 3.27451 3.30142 3.46930 3.57885 3.79930 4.03130 4.26975
4.44419 4.62814 4.86541 4.90648 5.07126 5.10064 5.28500 5.51490
5.63174 6.14901 6.62737 6.70768 6.76498 6.93734 7.08626 7.25166
7.51847 7.58997 7.73372 7.97718 8.30039 8.49127 8.75739 9.34060
10.82723
Molecular weight = 348.02amu
Principal moments of inertia in cm(-1)
A = 0.019605 B = 0.002324 C = 0.002178
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1427.829679 B =12046.979327 C =12853.293223
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.149 4.149
2 C 0.262 3.738
3 H 0.055 0.945
4 C -0.538 4.538
5 H 0.065 0.935
6 C 0.068 3.932
7 N -0.883 5.883
8 Si 0.905 3.095
9 H -0.278 1.278
10 H -0.272 1.272
11 H -0.284 1.284
12 N -0.664 5.664
13 C 0.496 3.504
14 O -0.530 6.530
15 C 0.512 3.488
16 O -0.498 6.498
17 N -0.648 5.648
18 C 0.139 3.861
19 C -0.079 4.079
20 C -0.021 4.021
21 Cl -0.034 7.034
22 C -0.023 4.023
23 Cl -0.037 7.037
24 C -0.115 4.115
25 C 0.094 3.906
26 F -0.120 7.120
27 H 0.095 0.905
28 H 0.017 0.983
29 H 0.031 0.969
30 H 0.266 0.734
31 H 0.403 0.597
32 H 0.431 0.569
33 H 0.172 0.828
34 H 0.161 0.839
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 5.463 -5.026 -22.734 23.915
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C 0.161 3.839
3 H 0.073 0.927
4 C -0.577 4.577
5 H 0.083 0.917
6 C -0.136 4.136
7 N -0.520 5.520
8 Si 0.732 3.268
9 H -0.204 1.204
10 H -0.197 1.197
11 H -0.210 1.210
12 N -0.313 5.313
13 C 0.274 3.726
14 O -0.408 6.408
15 C 0.295 3.705
16 O -0.370 6.370
17 N -0.296 5.296
18 C 0.042 3.958
19 C -0.100 4.100
20 C -0.049 4.049
21 Cl -0.005 7.005
22 C -0.052 4.052
23 Cl -0.008 7.008
24 C -0.135 4.135
25 C 0.072 3.928
26 F -0.098 7.098
27 H 0.114 0.886
28 H 0.036 0.964
29 H 0.050 0.950
30 H 0.076 0.924
31 H 0.238 0.762
32 H 0.270 0.730
33 H 0.189 0.811
34 H 0.179 0.821
Dipole moment (debyes) X Y Z Total
from point charges 5.386 -5.053 -22.563 23.741
hybrid contribution 0.391 -0.360 0.680 0.863
sum 5.777 -5.412 -21.883 23.271
Atomic orbital electron populations
1.22105 0.97687 0.99647 1.01313 1.19024 0.91520 0.94176 0.79178
0.92680 1.21178 1.32967 1.13557 0.89959 0.91694 1.24877 0.94654
0.94898 0.99129 1.69889 1.35620 1.22276 1.24177 0.86379 0.79288
0.79254 0.81837 1.20410 1.19720 1.20989 1.46536 1.60971 1.14583
1.09203 1.19472 0.81483 0.87307 0.84317 1.90758 1.50588 1.15025
1.84479 1.21176 0.77636 0.87125 0.84520 1.90740 1.46365 1.15164
1.84762 1.43171 1.60429 1.17990 1.07997 1.17630 0.96741 0.92633
0.88782 1.21127 0.99781 0.93002 0.96052 1.20556 1.00719 0.87575
0.96083 1.98412 1.94764 1.11431 1.95852 1.20388 1.00236 0.92539
0.92050 1.98405 1.83079 1.79901 1.39416 1.20738 1.01953 0.92882
0.97890 1.17241 0.99429 0.79249 0.96904 1.91575 1.92885 1.30719
1.94670 0.88622 0.96424 0.95017 0.92378 0.76219 0.72977 0.81055
0.82143
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.49 9.26 37.16 0.34 -3.15 16
2 C 0.26 6.32 2.56 -69.08 -0.18 6.14 16
3 H 0.06 1.51 7.58 -51.93 -0.39 1.11 16
4 C -0.54 -13.78 8.73 -34.44 -0.30 -14.08 16
5 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16
6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16
7 N -0.88 -23.88 11.32 55.43 0.63 -23.25 16
8 Si 0.91 20.13 29.54 -169.99 -5.02 15.11 16
9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16
10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16
11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16
12 N -0.66 -13.42 5.06 -55.40 -0.28 -13.70 16
13 C 0.50 9.28 7.85 -11.64 -0.09 9.19 16
14 O -0.53 -11.06 16.14 5.49 0.09 -10.97 16
15 C 0.51 7.88 7.73 -11.64 -0.09 7.79 16
16 O -0.50 -8.02 13.89 5.47 0.08 -7.95 16
17 N -0.65 -8.19 5.21 -10.24 -0.05 -8.24 16
18 C 0.14 1.59 6.31 -83.64 -0.53 1.06 16
19 C -0.08 -0.88 8.48 -39.36 -0.33 -1.22 16
20 C -0.02 -0.21 6.32 -39.49 -0.25 -0.46 16
21 Cl -0.03 -0.33 27.95 -51.86 -1.45 -1.78 16
22 C -0.02 -0.21 6.32 -39.44 -0.25 -0.46 16
23 Cl -0.04 -0.31 27.95 -51.86 -1.45 -1.76 16
24 C -0.11 -0.95 9.80 -39.52 -0.39 -1.34 16
25 C 0.09 0.94 7.31 -39.24 -0.29 0.65 16
26 F -0.12 -1.25 16.95 2.25 0.04 -1.21 16
27 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16
28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16
29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16
30 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16
31 H 0.40 7.51 8.01 -40.82 -0.33 7.18 16
32 H 0.43 4.99 8.13 -40.82 -0.33 4.66 16
33 H 0.17 2.08 6.19 -52.49 -0.33 1.76 16
34 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16
LS Contribution 337.67 15.07 5.09 5.09
Total: -1.00 -27.52 337.67 -7.28 -34.80
By element:
Atomic # 1 Polarization: 10.55 SS G_CDS: -2.50 Total: 8.05 kcal
Atomic # 6 Polarization: 8.24 SS G_CDS: -2.44 Total: 5.80 kcal
Atomic # 7 Polarization: -45.49 SS G_CDS: 0.29 Total: -45.19 kcal
Atomic # 8 Polarization: -19.08 SS G_CDS: 0.16 Total: -18.92 kcal
Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal
Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal
Atomic # 17 Polarization: -0.64 SS G_CDS: -2.90 Total: -3.54 kcal
Total LS contribution 5.09 Total: 5.09 kcal
Total: -27.52 -7.28 -34.80 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000281398078.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -63.636 kcal
(2) G-P(sol) polarization free energy of solvation -27.525 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.161 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.805 kcal
(6) G-S(sol) free energy of system = (1) + (5) -98.441 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.41 seconds