Wall clock time and date at job start Wed Apr 1 2020 05:29:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47104 * 2 1 4 4 C 1.50705 * 109.47367 * 119.99806 * 2 1 3 5 5 H 1.08007 * 119.99779 * 119.99806 * 4 2 1 6 6 C 1.37879 * 120.00279 * 300.00409 * 4 2 1 7 7 N 1.31516 * 119.99465 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00248 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47178 * 269.99988 * 8 6 4 10 10 H 1.48497 * 109.47146 * 29.99675 * 8 6 4 11 11 H 1.48491 * 109.47404 * 149.99949 * 8 6 4 12 12 N 1.46493 * 109.47593 * 240.00169 * 2 1 3 13 13 C 1.34777 * 120.00316 * 84.99609 * 12 2 1 14 14 O 1.21361 * 119.99673 * 0.02562 * 13 12 2 15 15 C 1.49334 * 120.00470 * 180.02562 * 13 12 2 16 16 O 1.21386 * 119.99910 * 359.97438 * 15 13 12 17 17 N 1.34777 * 120.00470 * 179.97438 * 15 13 12 18 18 C 1.39857 * 120.00543 * 175.52492 * 17 15 13 19 19 C 1.38872 * 120.06172 * 34.66942 * 18 17 15 20 20 C 1.38206 * 119.94580 * 179.97438 * 19 18 17 21 21 Cl 1.73606 * 119.95853 * 180.02562 * 20 19 18 22 22 C 1.38516 * 120.08628 * 0.02562 * 20 19 18 23 23 Cl 1.73596 * 119.93533 * 180.02562 * 22 20 19 24 24 C 1.38354 * 120.12793 * 0.02562 * 22 20 19 25 25 C 1.38298 * 120.04938 * 359.70698 * 24 22 20 26 26 F 1.35109 * 120.04055 * 180.27303 * 25 24 22 27 27 H 1.08999 * 109.47337 * 299.99680 * 1 2 3 28 28 H 1.08992 * 109.47178 * 60.00165 * 1 2 3 29 29 H 1.08997 * 109.46802 * 179.97438 * 1 2 3 30 30 H 0.97003 * 119.99472 * 179.97438 * 7 6 4 31 31 H 0.97006 * 120.00340 * 265.00407 * 12 2 1 32 32 H 0.97002 * 119.99723 * 355.52731 * 17 15 13 33 33 H 1.08002 * 120.02292 * 359.95511 * 19 18 17 34 34 H 1.07997 * 119.97702 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 1.3429 -2.1617 4.4119 10 1 3.6294 -1.7583 3.7122 11 1 2.4866 -0.1414 5.1123 12 7 2.0184 -0.6905 -1.1961 13 6 2.1471 -0.0182 -2.3571 14 8 1.8588 1.1594 -2.4115 15 6 2.6445 -0.7222 -3.5766 16 8 2.9333 -1.9000 -3.5221 17 7 2.7727 -0.0500 -4.7377 18 6 3.3260 -0.6835 -5.8551 19 6 3.0958 -2.0355 -6.0734 20 6 3.6434 -2.6589 -7.1786 21 17 3.3553 -4.3489 -7.4522 22 6 4.4217 -1.9370 -8.0685 23 17 5.1070 -2.7239 -9.4559 24 6 4.6541 -0.5902 -7.8537 25 6 4.1043 0.0404 -6.7524 26 9 4.3268 1.3569 -6.5458 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 0.7089 1.1613 3.4845 31 1 2.2491 -1.6317 -1.1526 32 1 2.4812 0.8732 -4.7983 33 1 2.4897 -2.5993 -5.3797 34 1 5.2616 -0.0298 -8.5488 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000281398078.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:14 Heat of formation + Delta-G solvation = -98.440615 kcal Electronic energy + Delta-G solvation = -24812.430857 eV Core-core repulsion = 20518.913436 eV Total energy + Delta-G solvation = -4293.517421 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.023 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.41671 -41.08822 -39.50770 -38.24610 -36.99285 -36.91430 -35.50926 -34.73172 -32.51098 -31.20428 -30.03253 -29.20828 -25.48546 -25.22264 -23.84534 -22.77058 -21.05377 -19.87851 -19.17036 -18.29197 -17.79091 -17.24565 -16.58934 -16.24847 -16.09018 -15.68118 -15.61105 -15.16295 -14.63394 -14.38401 -14.28295 -14.20312 -13.66761 -13.50423 -13.24755 -12.60126 -12.56083 -12.29715 -11.93135 -11.83985 -11.66476 -11.37392 -11.30207 -11.20327 -11.05544 -10.87319 -10.57427 -10.44304 -10.32933 -9.39737 -9.27597 -9.19843 -8.70098 -8.62932 -8.24302 -6.23301 -4.33310 0.19608 0.43196 1.36237 1.54751 1.67862 2.30385 2.75640 3.20285 3.27451 3.30142 3.46930 3.57885 3.79930 4.03130 4.26975 4.44419 4.62814 4.86541 4.90648 5.07126 5.10064 5.28500 5.51490 5.63174 6.14901 6.62737 6.70768 6.76498 6.93734 7.08626 7.25166 7.51847 7.58997 7.73372 7.97718 8.30039 8.49127 8.75739 9.34060 10.82723 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.019605 B = 0.002324 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.829679 B =12046.979327 C =12853.293223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.538 4.538 5 H 0.065 0.935 6 C 0.068 3.932 7 N -0.883 5.883 8 Si 0.905 3.095 9 H -0.278 1.278 10 H -0.272 1.272 11 H -0.284 1.284 12 N -0.664 5.664 13 C 0.496 3.504 14 O -0.530 6.530 15 C 0.512 3.488 16 O -0.498 6.498 17 N -0.648 5.648 18 C 0.139 3.861 19 C -0.079 4.079 20 C -0.021 4.021 21 Cl -0.034 7.034 22 C -0.023 4.023 23 Cl -0.037 7.037 24 C -0.115 4.115 25 C 0.094 3.906 26 F -0.120 7.120 27 H 0.095 0.905 28 H 0.017 0.983 29 H 0.031 0.969 30 H 0.266 0.734 31 H 0.403 0.597 32 H 0.431 0.569 33 H 0.172 0.828 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.463 -5.026 -22.734 23.915 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.161 3.839 3 H 0.073 0.927 4 C -0.577 4.577 5 H 0.083 0.917 6 C -0.136 4.136 7 N -0.520 5.520 8 Si 0.732 3.268 9 H -0.204 1.204 10 H -0.197 1.197 11 H -0.210 1.210 12 N -0.313 5.313 13 C 0.274 3.726 14 O -0.408 6.408 15 C 0.295 3.705 16 O -0.370 6.370 17 N -0.296 5.296 18 C 0.042 3.958 19 C -0.100 4.100 20 C -0.049 4.049 21 Cl -0.005 7.005 22 C -0.052 4.052 23 Cl -0.008 7.008 24 C -0.135 4.135 25 C 0.072 3.928 26 F -0.098 7.098 27 H 0.114 0.886 28 H 0.036 0.964 29 H 0.050 0.950 30 H 0.076 0.924 31 H 0.238 0.762 32 H 0.270 0.730 33 H 0.189 0.811 34 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 5.386 -5.053 -22.563 23.741 hybrid contribution 0.391 -0.360 0.680 0.863 sum 5.777 -5.412 -21.883 23.271 Atomic orbital electron populations 1.22105 0.97687 0.99647 1.01313 1.19024 0.91520 0.94176 0.79178 0.92680 1.21178 1.32967 1.13557 0.89959 0.91694 1.24877 0.94654 0.94898 0.99129 1.69889 1.35620 1.22276 1.24177 0.86379 0.79288 0.79254 0.81837 1.20410 1.19720 1.20989 1.46536 1.60971 1.14583 1.09203 1.19472 0.81483 0.87307 0.84317 1.90758 1.50588 1.15025 1.84479 1.21176 0.77636 0.87125 0.84520 1.90740 1.46365 1.15164 1.84762 1.43171 1.60429 1.17990 1.07997 1.17630 0.96741 0.92633 0.88782 1.21127 0.99781 0.93002 0.96052 1.20556 1.00719 0.87575 0.96083 1.98412 1.94764 1.11431 1.95852 1.20388 1.00236 0.92539 0.92050 1.98405 1.83079 1.79901 1.39416 1.20738 1.01953 0.92882 0.97890 1.17241 0.99429 0.79249 0.96904 1.91575 1.92885 1.30719 1.94670 0.88622 0.96424 0.95017 0.92378 0.76219 0.72977 0.81055 0.82143 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.49 9.26 37.16 0.34 -3.15 16 2 C 0.26 6.32 2.56 -69.08 -0.18 6.14 16 3 H 0.06 1.51 7.58 -51.93 -0.39 1.11 16 4 C -0.54 -13.78 8.73 -34.44 -0.30 -14.08 16 5 H 0.06 1.61 7.74 -52.48 -0.41 1.20 16 6 C 0.07 1.77 5.30 -17.82 -0.09 1.68 16 7 N -0.88 -23.88 11.32 55.43 0.63 -23.25 16 8 Si 0.91 20.13 29.54 -169.99 -5.02 15.11 16 9 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 10 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 11 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 12 N -0.66 -13.42 5.06 -55.40 -0.28 -13.70 16 13 C 0.50 9.28 7.85 -11.64 -0.09 9.19 16 14 O -0.53 -11.06 16.14 5.49 0.09 -10.97 16 15 C 0.51 7.88 7.73 -11.64 -0.09 7.79 16 16 O -0.50 -8.02 13.89 5.47 0.08 -7.95 16 17 N -0.65 -8.19 5.21 -10.24 -0.05 -8.24 16 18 C 0.14 1.59 6.31 -83.64 -0.53 1.06 16 19 C -0.08 -0.88 8.48 -39.36 -0.33 -1.22 16 20 C -0.02 -0.21 6.32 -39.49 -0.25 -0.46 16 21 Cl -0.03 -0.33 27.95 -51.86 -1.45 -1.78 16 22 C -0.02 -0.21 6.32 -39.44 -0.25 -0.46 16 23 Cl -0.04 -0.31 27.95 -51.86 -1.45 -1.76 16 24 C -0.11 -0.95 9.80 -39.52 -0.39 -1.34 16 25 C 0.09 0.94 7.31 -39.24 -0.29 0.65 16 26 F -0.12 -1.25 16.95 2.25 0.04 -1.21 16 27 H 0.10 2.44 6.07 -51.93 -0.32 2.13 16 28 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 31 H 0.40 7.51 8.01 -40.82 -0.33 7.18 16 32 H 0.43 4.99 8.13 -40.82 -0.33 4.66 16 33 H 0.17 2.08 6.19 -52.49 -0.33 1.76 16 34 H 0.16 0.95 8.06 -52.49 -0.42 0.53 16 LS Contribution 337.67 15.07 5.09 5.09 Total: -1.00 -27.52 337.67 -7.28 -34.80 By element: Atomic # 1 Polarization: 10.55 SS G_CDS: -2.50 Total: 8.05 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -2.44 Total: 5.80 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.29 Total: -45.19 kcal Atomic # 8 Polarization: -19.08 SS G_CDS: 0.16 Total: -18.92 kcal Atomic # 9 Polarization: -1.25 SS G_CDS: 0.04 Total: -1.21 kcal Atomic # 14 Polarization: 20.13 SS G_CDS: -5.02 Total: 15.11 kcal Atomic # 17 Polarization: -0.64 SS G_CDS: -2.90 Total: -3.54 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.52 -7.28 -34.80 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281398078.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.636 kcal (2) G-P(sol) polarization free energy of solvation -27.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.805 kcal (6) G-S(sol) free energy of system = (1) + (5) -98.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds