Wall clock time and date at job start Wed Apr 1 2020 05:29:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09005 * 109.47104 * 2 1 4 4 C 1.50705 * 109.47367 * 119.99806 * 2 1 3 5 5 H 1.08007 * 119.99779 * 119.99806 * 4 2 1 6 6 C 1.37879 * 120.00279 * 300.00409 * 4 2 1 7 7 N 1.31516 * 119.99465 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 120.00248 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47178 * 269.99988 * 8 6 4 10 10 H 1.48497 * 109.47146 * 29.99675 * 8 6 4 11 11 H 1.48491 * 109.47404 * 149.99949 * 8 6 4 12 12 N 1.46493 * 109.47593 * 240.00169 * 2 1 3 13 13 C 1.34777 * 120.00316 * 84.99609 * 12 2 1 14 14 O 1.21361 * 119.99673 * 0.02562 * 13 12 2 15 15 C 1.49334 * 120.00470 * 180.02562 * 13 12 2 16 16 O 1.21386 * 119.99910 * 359.97438 * 15 13 12 17 17 N 1.34777 * 120.00470 * 179.97438 * 15 13 12 18 18 C 1.39857 * 120.00543 * 175.52492 * 17 15 13 19 19 C 1.38872 * 120.06172 * 34.66942 * 18 17 15 20 20 C 1.38206 * 119.94580 * 179.97438 * 19 18 17 21 21 Cl 1.73606 * 119.95853 * 180.02562 * 20 19 18 22 22 C 1.38516 * 120.08628 * 0.02562 * 20 19 18 23 23 Cl 1.73596 * 119.93533 * 180.02562 * 22 20 19 24 24 C 1.38354 * 120.12793 * 0.02562 * 22 20 19 25 25 C 1.38298 * 120.04938 * 359.70698 * 24 22 20 26 26 F 1.35109 * 120.04055 * 180.27303 * 25 24 22 27 27 H 1.08999 * 109.47337 * 299.99680 * 1 2 3 28 28 H 1.08992 * 109.47178 * 60.00165 * 1 2 3 29 29 H 1.08997 * 109.46802 * 179.97438 * 1 2 3 30 30 H 0.97003 * 119.99472 * 179.97438 * 7 6 4 31 31 H 0.97006 * 120.00340 * 265.00407 * 12 2 1 32 32 H 0.97002 * 119.99723 * 355.52731 * 17 15 13 33 33 H 1.08002 * 120.02292 * 359.95511 * 19 18 17 34 34 H 1.07997 * 119.97702 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6993 -0.2394 2.4828 7 7 0.9435 0.8302 2.6034 8 14 2.3214 -1.1203 4.0080 9 1 1.3429 -2.1617 4.4119 10 1 3.6294 -1.7583 3.7122 11 1 2.4866 -0.1414 5.1123 12 7 2.0184 -0.6905 -1.1961 13 6 2.1471 -0.0182 -2.3571 14 8 1.8588 1.1594 -2.4115 15 6 2.6445 -0.7222 -3.5766 16 8 2.9333 -1.9000 -3.5221 17 7 2.7727 -0.0500 -4.7377 18 6 3.3260 -0.6835 -5.8551 19 6 3.0958 -2.0355 -6.0734 20 6 3.6434 -2.6589 -7.1786 21 17 3.3553 -4.3489 -7.4522 22 6 4.4217 -1.9370 -8.0685 23 17 5.1070 -2.7239 -9.4559 24 6 4.6541 -0.5902 -7.8537 25 6 4.1043 0.0404 -6.7524 26 9 4.3268 1.3569 -6.5458 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8899 29 1 -0.3633 -1.0276 -0.0005 30 1 0.7089 1.1613 3.4845 31 1 2.2491 -1.6317 -1.1526 32 1 2.4812 0.8732 -4.7983 33 1 2.4897 -2.5993 -5.3797 34 1 5.2616 -0.0298 -8.5488 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000281398078.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:13 Heat of formation + Delta-G solvation = -115.151021 kcal Electronic energy + Delta-G solvation = -24813.155474 eV Core-core repulsion = 20518.913436 eV Total energy + Delta-G solvation = -4294.242039 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.023 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -50.23134 -42.26720 -40.64042 -39.53708 -37.80588 -37.69634 -37.05486 -35.99769 -34.36180 -32.01462 -31.21519 -30.76197 -27.38771 -26.56757 -24.76581 -23.81267 -22.55996 -21.39586 -20.47132 -19.30970 -18.75587 -18.37329 -17.90470 -17.56118 -17.25671 -16.90432 -16.80554 -16.69522 -15.94934 -15.48680 -15.33277 -15.03576 -15.00136 -14.83228 -14.45259 -14.20230 -13.77366 -13.47655 -13.10140 -13.03008 -12.91614 -12.88978 -12.75454 -12.62504 -12.32113 -12.27228 -12.14197 -12.05050 -11.45266 -11.16329 -10.80309 -10.63212 -10.13984 -10.01950 -9.50016 -8.20906 -6.38035 -0.66769 -0.35415 0.26195 0.61585 0.86290 1.13738 1.45832 1.47006 1.57166 1.86448 2.11805 2.36282 2.55141 2.76538 3.10317 3.26655 3.38639 3.63974 3.82385 4.05439 4.29637 4.47174 4.66060 4.69805 4.75593 4.88138 5.00800 5.25242 5.28257 5.39418 5.56274 5.66778 5.81045 6.03085 6.31541 6.61543 6.68136 7.02352 7.34154 8.85156 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.019605 B = 0.002324 C = 0.002178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1427.829679 B =12046.979327 C =12853.293223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.268 3.732 3 H 0.016 0.984 4 C -0.552 4.552 5 H 0.071 0.929 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.971 3.029 9 H -0.271 1.271 10 H -0.267 1.267 11 H -0.284 1.284 12 N -0.667 5.667 13 C 0.497 3.503 14 O -0.554 6.554 15 C 0.525 3.475 16 O -0.505 6.505 17 N -0.635 5.635 18 C 0.121 3.879 19 C -0.083 4.083 20 C -0.025 4.025 21 Cl -0.032 7.032 22 C -0.019 4.019 23 Cl -0.024 7.024 24 C -0.100 4.100 25 C 0.099 3.901 26 F -0.122 7.122 27 H 0.073 0.927 28 H 0.022 0.978 29 H 0.041 0.959 30 H 0.268 0.732 31 H 0.412 0.588 32 H 0.435 0.565 33 H 0.161 0.839 34 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.613 -5.985 -24.181 25.773 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.166 3.834 3 H 0.034 0.966 4 C -0.590 4.590 5 H 0.089 0.911 6 C -0.180 4.180 7 N -0.550 5.550 8 Si 0.795 3.205 9 H -0.197 1.197 10 H -0.191 1.191 11 H -0.210 1.210 12 N -0.317 5.317 13 C 0.277 3.723 14 O -0.433 6.433 15 C 0.307 3.693 16 O -0.379 6.379 17 N -0.283 5.283 18 C 0.025 3.975 19 C -0.104 4.104 20 C -0.054 4.054 21 Cl -0.003 7.003 22 C -0.048 4.048 23 Cl 0.005 6.995 24 C -0.119 4.119 25 C 0.077 3.923 26 F -0.100 7.100 27 H 0.092 0.908 28 H 0.041 0.959 29 H 0.060 0.940 30 H 0.077 0.923 31 H 0.248 0.752 32 H 0.276 0.724 33 H 0.178 0.822 34 H 0.208 0.792 Dipole moment (debyes) X Y Z Total from point charges 6.549 -6.025 -24.065 25.658 hybrid contribution 0.071 -0.045 0.968 0.972 sum 6.620 -6.069 -23.097 24.782 Atomic orbital electron populations 1.21932 0.97321 0.99918 1.00410 1.18636 0.91766 0.92413 0.80568 0.96603 1.21491 1.33073 1.13789 0.90693 0.91069 1.25709 0.94762 0.95519 1.02051 1.70017 1.36594 1.23550 1.24840 0.85360 0.78927 0.78110 0.78070 1.19678 1.19122 1.21001 1.46261 1.61594 1.14892 1.08909 1.19944 0.80435 0.87008 0.84939 1.90741 1.51264 1.16214 1.85094 1.20270 0.78062 0.86730 0.84197 1.90750 1.47104 1.15175 1.84839 1.42946 1.59821 1.18002 1.07554 1.17709 0.98048 0.92935 0.88791 1.21006 1.00074 0.92930 0.96414 1.20589 1.00937 0.87762 0.96085 1.98414 1.94783 1.11311 1.95794 1.20483 0.99479 0.92795 0.92002 1.98418 1.82750 1.79758 1.38593 1.20996 1.01033 0.92543 0.97354 1.17266 0.99093 0.79072 0.96893 1.91578 1.92855 1.30862 1.94715 0.90840 0.95925 0.94017 0.92316 0.75216 0.72429 0.82151 0.79246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.54 9.26 71.98 0.67 -5.87 16 2 C 0.27 13.25 2.56 44.25 0.11 13.36 16 3 H 0.02 0.91 7.58 -2.38 -0.02 0.89 16 4 C -0.55 -28.44 8.73 25.60 0.22 -28.22 16 5 H 0.07 3.49 7.74 -2.91 -0.02 3.47 16 6 C 0.02 1.07 5.30 84.65 0.45 1.51 16 7 N -0.91 -50.16 11.32 21.45 0.24 -49.92 16 8 Si 0.97 41.08 29.54 68.60 2.03 43.11 16 9 H -0.27 -11.13 7.11 99.48 0.71 -10.43 16 10 H -0.27 -10.96 7.11 99.48 0.71 -10.25 16 11 H -0.28 -11.96 7.11 99.48 0.71 -11.25 16 12 N -0.67 -27.22 5.06 -447.55 -2.27 -29.48 16 13 C 0.50 18.74 7.85 87.23 0.68 19.42 16 14 O -0.55 -23.49 16.14 -3.28 -0.05 -23.54 16 15 C 0.52 15.96 7.73 87.23 0.67 16.63 16 16 O -0.50 -15.99 13.89 -3.36 -0.05 -16.04 16 17 N -0.64 -15.61 5.21 -304.66 -1.59 -17.20 16 18 C 0.12 2.61 6.31 38.22 0.24 2.85 16 19 C -0.08 -1.78 8.48 22.41 0.19 -1.59 16 20 C -0.03 -0.47 6.32 22.33 0.14 -0.33 16 21 Cl -0.03 -0.59 27.95 -2.72 -0.08 -0.67 16 22 C -0.02 -0.30 6.32 22.36 0.14 -0.16 16 23 Cl -0.02 -0.34 27.95 -2.72 -0.08 -0.42 16 24 C -0.10 -1.36 9.80 22.31 0.22 -1.14 16 25 C 0.10 1.76 7.31 22.49 0.16 1.92 16 26 F -0.12 -2.29 16.95 44.97 0.76 -1.53 16 27 H 0.07 3.85 6.07 -2.39 -0.01 3.83 16 28 H 0.02 1.00 8.14 -2.39 -0.02 0.98 16 29 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 30 H 0.27 13.93 8.31 -92.71 -0.77 13.16 16 31 H 0.41 15.31 8.01 -92.70 -0.74 14.57 16 32 H 0.44 9.83 8.13 -92.71 -0.75 9.08 16 33 H 0.16 3.82 6.19 -2.91 -0.02 3.80 16 34 H 0.19 1.49 8.06 -2.91 -0.02 1.46 16 Total: -1.00 -58.70 337.67 2.55 -56.14 By element: Atomic # 1 Polarization: 21.43 SS G_CDS: -0.28 Total: 21.14 kcal Atomic # 6 Polarization: 14.48 SS G_CDS: 3.91 Total: 18.39 kcal Atomic # 7 Polarization: -92.99 SS G_CDS: -3.61 Total: -96.60 kcal Atomic # 8 Polarization: -39.48 SS G_CDS: -0.10 Total: -39.58 kcal Atomic # 9 Polarization: -2.29 SS G_CDS: 0.76 Total: -1.53 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Atomic # 17 Polarization: -0.93 SS G_CDS: -0.15 Total: -1.08 kcal Total: -58.70 2.55 -56.14 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000281398078.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.007 kcal (2) G-P(sol) polarization free energy of solvation -58.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.552 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds