Wall clock time and date at job start Wed Apr 1 2020 05:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46500 * 119.99880 * 2 1 4 4 C 1.50693 * 109.47057 * 269.99951 * 3 2 1 5 5 H 1.07994 * 120.00487 * 0.02562 * 4 3 2 6 6 C 1.37883 * 120.00046 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99851 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00135 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46785 * 60.00062 * 8 6 4 10 10 H 1.48494 * 109.46841 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46951 * 300.00033 * 8 6 4 12 12 C 1.34779 * 120.00064 * 179.97438 * 2 1 3 13 13 O 1.21363 * 119.99794 * 174.34287 * 12 2 1 14 14 C 1.49333 * 119.99905 * 354.34502 * 12 2 1 15 15 O 1.21389 * 120.00283 * 359.72359 * 14 12 2 16 16 N 1.34781 * 119.99976 * 179.72124 * 14 12 2 17 17 C 1.39855 * 120.00197 * 185.16146 * 16 14 12 18 18 C 1.38857 * 120.06641 * 326.45031 * 17 16 14 19 19 C 1.38212 * 119.94854 * 179.97438 * 18 17 16 20 20 Cl 1.73598 * 119.95962 * 180.02562 * 19 18 17 21 21 C 1.38515 * 120.08473 * 359.97438 * 19 18 17 22 22 Cl 1.73594 * 119.93868 * 179.97438 * 21 19 18 23 23 C 1.38358 * 120.12807 * 0.02562 * 21 19 18 24 24 C 1.38295 * 120.05050 * 359.97438 * 23 21 19 25 25 F 1.35105 * 120.04312 * 179.97438 * 24 23 21 26 26 H 1.08996 * 109.46854 * 264.05811 * 1 2 3 27 27 H 1.09000 * 109.47348 * 24.06377 * 1 2 3 28 28 H 1.08997 * 109.46712 * 144.06225 * 1 2 3 29 29 H 1.09005 * 109.46981 * 30.00036 * 3 2 1 30 30 H 1.09001 * 109.47338 * 150.00018 * 3 2 1 31 31 H 0.97005 * 120.00021 * 180.02562 * 7 6 4 32 32 H 0.97002 * 119.99387 * 5.16638 * 16 14 12 33 33 H 1.08001 * 120.02787 * 0.25332 * 18 17 16 34 34 H 1.07994 * 119.97789 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0962 -2.2416 6 6 3.1269 2.8775 -1.6727 7 7 3.5542 3.6176 -0.6731 8 14 3.4376 3.4171 -3.4339 9 1 2.1398 3.5955 -4.1332 10 1 4.1802 4.7031 -3.4339 11 1 4.2393 2.3820 -4.1346 12 6 2.1390 -1.1672 0.0005 13 8 3.3482 -1.1698 -0.1031 14 6 1.3977 -2.4573 0.1285 15 8 0.1887 -2.4545 0.2372 16 7 2.0711 -3.6248 0.1234 17 6 1.3715 -4.8357 0.1344 18 6 0.1641 -4.9354 0.8129 19 6 -0.5256 -6.1331 0.8217 20 17 -2.0354 -6.2579 1.6694 21 6 -0.0141 -7.2338 0.1542 22 17 -0.8832 -8.7364 0.1683 23 6 1.1886 -7.1382 -0.5229 24 6 1.8833 -5.9424 -0.5353 25 9 3.0580 -5.8493 -1.1961 26 1 -0.3633 -0.1064 1.0221 27 1 -0.3634 0.9383 -0.4190 28 1 -0.3632 -0.8320 -0.6031 29 1 1.6084 2.0284 0.5139 30 1 3.1500 1.1385 0.5138 31 1 4.0310 4.4435 -0.8504 32 1 3.0411 -3.6251 0.1122 33 1 -0.2380 -4.0765 1.3296 34 1 1.5854 -7.9980 -1.0422 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000283189526.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:49 Heat of formation + Delta-G solvation = -81.587261 kcal Electronic energy + Delta-G solvation = -25124.185252 eV Core-core repulsion = 20831.398648 eV Total energy + Delta-G solvation = -4292.786605 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.023 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.38967 -41.12939 -39.53299 -38.14274 -36.98699 -36.91481 -35.70296 -34.53029 -32.65234 -31.18352 -29.98458 -28.14389 -26.39428 -24.93881 -23.92969 -23.07679 -21.76982 -19.92800 -18.59402 -17.89372 -17.59615 -16.96408 -16.68711 -16.36001 -16.15994 -15.73516 -15.54603 -15.13191 -14.64042 -14.44345 -14.28018 -14.20002 -13.76653 -13.40068 -13.21606 -12.66242 -12.51442 -12.28787 -12.18167 -12.03928 -11.84868 -11.59040 -11.37190 -11.30431 -11.05845 -10.90063 -10.66483 -10.51552 -10.26399 -9.77610 -9.35133 -9.01423 -8.60250 -8.53301 -7.92592 -6.15122 -4.20799 0.21725 0.45093 1.37472 1.59011 1.69116 2.33348 2.77820 3.27601 3.31820 3.34611 3.50435 3.60007 3.77173 4.04877 4.35401 4.44592 4.59926 4.65471 4.90211 5.07332 5.19913 5.30411 5.53481 5.62478 5.84207 6.01634 6.15369 6.38499 6.63668 6.85283 7.16585 7.24870 7.56114 7.79814 8.03639 8.06753 8.47042 8.82739 9.44475 10.93107 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.020637 B = 0.002491 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.478927 B =11235.555860 C =12002.294794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.559 5.559 3 C 0.243 3.757 4 C -0.532 4.532 5 H 0.059 0.941 6 C 0.064 3.936 7 N -0.893 5.893 8 Si 0.901 3.099 9 H -0.276 1.276 10 H -0.285 1.285 11 H -0.275 1.275 12 C 0.495 3.505 13 O -0.517 6.517 14 C 0.513 3.487 15 O -0.495 6.495 16 N -0.648 5.648 17 C 0.141 3.859 18 C -0.081 4.081 19 C -0.021 4.021 20 Cl -0.035 7.035 21 C -0.024 4.024 22 Cl -0.038 7.038 23 C -0.114 4.114 24 C 0.093 3.907 25 F -0.120 7.120 26 H 0.052 0.948 27 H 0.073 0.927 28 H 0.081 0.919 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.266 0.734 32 H 0.431 0.569 33 H 0.174 0.826 34 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.525 -22.772 4.068 24.653 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 N -0.290 5.290 3 C 0.125 3.875 4 C -0.571 4.571 5 H 0.077 0.923 6 C -0.139 4.139 7 N -0.532 5.532 8 Si 0.728 3.272 9 H -0.201 1.201 10 H -0.211 1.211 11 H -0.201 1.201 12 C 0.275 3.725 13 O -0.394 6.394 14 C 0.297 3.703 15 O -0.369 6.369 16 N -0.296 5.296 17 C 0.043 3.957 18 C -0.102 4.102 19 C -0.049 4.049 20 Cl -0.005 7.005 21 C -0.053 4.053 22 Cl -0.009 7.009 23 C -0.135 4.135 24 C 0.071 3.929 25 F -0.098 7.098 26 H 0.071 0.929 27 H 0.092 0.908 28 H 0.100 0.900 29 H 0.060 0.940 30 H 0.066 0.934 31 H 0.075 0.925 32 H 0.270 0.730 33 H 0.191 0.809 34 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -8.805 -22.568 4.178 24.583 hybrid contribution 0.656 0.221 -1.082 1.284 sum -8.149 -22.347 3.096 23.987 Atomic orbital electron populations 1.22075 0.79346 1.03513 1.01708 1.48155 1.07695 1.06656 1.66506 1.19552 0.92627 0.77136 0.98216 1.21318 1.37203 1.06693 0.91839 0.92256 1.24926 0.95090 0.96190 0.97702 1.69911 1.37963 1.14353 1.30926 0.86505 0.78474 0.77878 0.84296 1.20127 1.21075 1.20064 1.19341 0.87534 0.84082 0.81566 1.90776 1.13196 1.86241 1.49159 1.21198 0.87739 0.85574 0.75799 1.90684 1.13872 1.86911 1.45390 1.43215 1.11997 1.02660 1.71685 1.17649 0.94586 0.85650 0.97778 1.21176 0.93436 0.97418 0.98145 1.20558 0.91216 0.93568 0.99582 1.98409 1.28674 1.98151 1.75316 1.20383 0.94723 0.88326 1.01885 1.98403 1.75368 1.29787 1.97326 1.20735 0.93723 0.97708 1.01287 1.17254 0.85050 0.93945 0.96681 1.91577 1.43595 1.96606 1.78058 0.92926 0.90826 0.90046 0.93954 0.93447 0.92451 0.72991 0.80852 0.82182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.29 9.26 59.85 0.55 1.84 16 2 N -0.56 -11.57 2.86 -183.51 -0.52 -12.10 16 3 C 0.24 6.06 5.09 -5.20 -0.03 6.03 16 4 C -0.53 -14.57 9.39 -34.44 -0.32 -14.89 16 5 H 0.06 1.63 7.81 -52.49 -0.41 1.22 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 8 Si 0.90 21.30 29.54 -169.99 -5.02 16.28 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 C 0.50 9.77 7.72 -11.64 -0.09 9.68 16 13 O -0.52 -11.63 16.12 5.49 0.09 -11.54 16 14 C 0.51 8.04 7.62 -11.64 -0.09 7.95 16 15 O -0.50 -7.69 10.59 5.46 0.06 -7.63 16 16 N -0.65 -8.46 5.22 -10.24 -0.05 -8.51 16 17 C 0.14 1.62 6.33 -83.64 -0.53 1.09 16 18 C -0.08 -0.90 8.50 -39.36 -0.33 -1.23 16 19 C -0.02 -0.21 6.32 -39.49 -0.25 -0.46 16 20 Cl -0.03 -0.33 27.95 -51.86 -1.45 -1.78 16 21 C -0.02 -0.22 6.32 -39.44 -0.25 -0.47 16 22 Cl -0.04 -0.31 27.95 -51.86 -1.45 -1.76 16 23 C -0.11 -0.97 9.80 -39.52 -0.39 -1.36 16 24 C 0.09 0.95 7.31 -39.24 -0.29 0.66 16 25 F -0.12 -1.30 16.94 2.25 0.04 -1.26 16 26 H 0.05 0.79 8.13 -51.93 -0.42 0.37 16 27 H 0.07 1.23 8.03 -51.93 -0.42 0.81 16 28 H 0.08 1.31 5.85 -51.93 -0.30 1.01 16 29 H 0.04 1.06 8.07 -51.93 -0.42 0.64 16 30 H 0.05 1.30 7.51 -51.93 -0.39 0.91 16 31 H 0.27 7.22 8.31 -40.82 -0.34 6.88 16 32 H 0.43 5.29 8.11 -40.82 -0.33 4.96 16 33 H 0.17 2.06 6.07 -52.49 -0.32 1.74 16 34 H 0.16 0.98 8.06 -52.49 -0.42 0.56 16 LS Contribution 336.83 15.07 5.08 5.08 Total: -1.00 -29.65 336.83 -7.18 -36.83 By element: Atomic # 1 Polarization: 3.36 SS G_CDS: -2.57 Total: 0.79 kcal Atomic # 6 Polarization: 12.63 SS G_CDS: -2.11 Total: 10.52 kcal Atomic # 7 Polarization: -45.66 SS G_CDS: 0.16 Total: -45.50 kcal Atomic # 8 Polarization: -19.32 SS G_CDS: 0.15 Total: -19.17 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -2.90 Total: -3.55 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -29.65 -7.18 -36.83 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283189526.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.760 kcal (2) G-P(sol) polarization free energy of solvation -29.650 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.587 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds