Wall clock time and date at job start Wed Apr 1 2020 05:29:49
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46505 * 1
3 3 C 1.46500 * 119.99880 * 2 1
4 4 C 1.50693 * 109.47057 * 269.99951 * 3 2 1
5 5 H 1.07994 * 120.00487 * 0.02562 * 4 3 2
6 6 C 1.37883 * 120.00046 * 180.02562 * 4 3 2
7 7 N 1.31511 * 119.99851 * 359.97438 * 6 4 3
8 8 Si 1.86804 * 120.00135 * 180.02562 * 6 4 3
9 9 H 1.48501 * 109.46785 * 60.00062 * 8 6 4
10 10 H 1.48494 * 109.46841 * 179.97438 * 8 6 4
11 11 H 1.48500 * 109.46951 * 300.00033 * 8 6 4
12 12 C 1.34779 * 120.00064 * 179.97438 * 2 1 3
13 13 O 1.21363 * 119.99794 * 174.34287 * 12 2 1
14 14 C 1.49333 * 119.99905 * 354.34502 * 12 2 1
15 15 O 1.21389 * 120.00283 * 359.72359 * 14 12 2
16 16 N 1.34781 * 119.99976 * 179.72124 * 14 12 2
17 17 C 1.39855 * 120.00197 * 185.16146 * 16 14 12
18 18 C 1.38857 * 120.06641 * 326.45031 * 17 16 14
19 19 C 1.38212 * 119.94854 * 179.97438 * 18 17 16
20 20 Cl 1.73598 * 119.95962 * 180.02562 * 19 18 17
21 21 C 1.38515 * 120.08473 * 359.97438 * 19 18 17
22 22 Cl 1.73594 * 119.93868 * 179.97438 * 21 19 18
23 23 C 1.38358 * 120.12807 * 0.02562 * 21 19 18
24 24 C 1.38295 * 120.05050 * 359.97438 * 23 21 19
25 25 F 1.35105 * 120.04312 * 179.97438 * 24 23 21
26 26 H 1.08996 * 109.46854 * 264.05811 * 1 2 3
27 27 H 1.09000 * 109.47348 * 24.06377 * 1 2 3
28 28 H 1.08997 * 109.46712 * 144.06225 * 1 2 3
29 29 H 1.09005 * 109.46981 * 30.00036 * 3 2 1
30 30 H 1.09001 * 109.47338 * 150.00018 * 3 2 1
31 31 H 0.97005 * 120.00021 * 180.02562 * 7 6 4
32 32 H 0.97002 * 119.99387 * 5.16638 * 16 14 12
33 33 H 1.08001 * 120.02787 * 0.25332 * 18 17 16
34 34 H 1.07994 * 119.97789 * 179.97438 * 23 21 19
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1975 1.2687 0.0000
4 6 2.4487 1.7037 -1.4208
5 1 2.0975 1.0962 -2.2416
6 6 3.1269 2.8775 -1.6727
7 7 3.5542 3.6176 -0.6731
8 14 3.4376 3.4171 -3.4339
9 1 2.1398 3.5955 -4.1332
10 1 4.1802 4.7031 -3.4339
11 1 4.2393 2.3820 -4.1346
12 6 2.1390 -1.1672 0.0005
13 8 3.3482 -1.1698 -0.1031
14 6 1.3977 -2.4573 0.1285
15 8 0.1887 -2.4545 0.2372
16 7 2.0711 -3.6248 0.1234
17 6 1.3715 -4.8357 0.1344
18 6 0.1641 -4.9354 0.8129
19 6 -0.5256 -6.1331 0.8217
20 17 -2.0354 -6.2579 1.6694
21 6 -0.0141 -7.2338 0.1542
22 17 -0.8832 -8.7364 0.1683
23 6 1.1886 -7.1382 -0.5229
24 6 1.8833 -5.9424 -0.5353
25 9 3.0580 -5.8493 -1.1961
26 1 -0.3633 -0.1064 1.0221
27 1 -0.3634 0.9383 -0.4190
28 1 -0.3632 -0.8320 -0.6031
29 1 1.6084 2.0284 0.5139
30 1 3.1500 1.1385 0.5138
31 1 4.0310 4.4435 -0.8504
32 1 3.0411 -3.6251 0.1122
33 1 -0.2380 -4.0765 1.3296
34 1 1.5854 -7.9980 -1.0422
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000283189526.mol2 34
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:29:49
Heat of formation + Delta-G solvation = -99.137054 kcal
Electronic energy + Delta-G solvation = -25124.946269 eV
Core-core repulsion = 20831.398648 eV
Total energy + Delta-G solvation = -4293.547621 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 348.023 amu
Computer time = 0.44 seconds
Orbital eigenvalues (eV)
-50.22622 -42.33598 -40.64594 -39.45594 -37.85175 -37.68328 -37.09684 -35.83529
-34.67187 -31.99370 -30.92787 -30.03310 -27.82192 -26.48008 -25.06264 -24.23626
-23.03798 -21.23152 -19.63552 -18.88462 -18.78437 -18.70281 -17.94635 -17.62468
-17.22746 -16.92553 -16.84061 -16.58245 -16.15177 -15.46761 -15.40181 -15.01753
-14.92186 -14.84363 -14.27496 -14.17240 -13.89637 -13.71907 -13.43976 -13.16297
-13.01091 -12.92601 -12.75742 -12.61265 -12.37565 -12.24933 -12.20244 -12.03762
-11.77350 -11.43082 -10.65447 -10.51511 -10.11440 -9.68051 -9.45794 -8.25388
-6.39693 -0.65238 -0.33844 0.28342 0.62877 0.87245 1.14036 1.39391
1.42121 1.50014 1.87223 2.12238 2.33434 2.45244 2.78011 3.05190
3.14098 3.30941 3.64983 3.83343 4.06592 4.29069 4.41534 4.48724
4.65910 4.69310 4.74912 4.86018 5.03038 5.12956 5.28092 5.39910
5.61784 5.72249 5.98005 6.23854 6.50249 6.65964 6.91163 7.30536
8.82055
Molecular weight = 348.02amu
Principal moments of inertia in cm(-1)
A = 0.020637 B = 0.002491 C = 0.002332
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1356.478927 B =11235.555860 C =12002.294794
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.079 3.921
2 N -0.569 5.569
3 C 0.256 3.744
4 C -0.548 4.548
5 H 0.054 0.946
6 C 0.014 3.986
7 N -0.924 5.924
8 Si 0.966 3.034
9 H -0.263 1.263
10 H -0.278 1.278
11 H -0.276 1.276
12 C 0.489 3.511
13 O -0.552 6.552
14 C 0.527 3.473
15 O -0.493 6.493
16 N -0.637 5.637
17 C 0.123 3.877
18 C -0.083 4.083
19 C -0.024 4.024
20 Cl -0.031 7.031
21 C -0.020 4.020
22 Cl -0.025 7.025
23 C -0.100 4.100
24 C 0.096 3.904
25 F -0.124 7.124
26 H 0.073 0.927
27 H 0.072 0.928
28 H 0.092 0.908
29 H 0.037 0.963
30 H 0.013 0.987
31 H 0.269 0.731
32 H 0.433 0.567
33 H 0.166 0.834
34 H 0.189 0.811
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -9.504 -24.685 3.097 26.632
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.062 4.062
2 N -0.300 5.300
3 C 0.136 3.864
4 C -0.586 4.586
5 H 0.072 0.928
6 C -0.186 4.186
7 N -0.563 5.563
8 Si 0.790 3.210
9 H -0.188 1.188
10 H -0.203 1.203
11 H -0.201 1.201
12 C 0.271 3.729
13 O -0.432 6.432
14 C 0.310 3.690
15 O -0.367 6.367
16 N -0.285 5.285
17 C 0.027 3.973
18 C -0.104 4.104
19 C -0.053 4.053
20 Cl -0.002 7.002
21 C -0.049 4.049
22 Cl 0.004 6.996
23 C -0.120 4.120
24 C 0.073 3.927
25 F -0.102 7.102
26 H 0.091 0.909
27 H 0.090 0.910
28 H 0.110 0.890
29 H 0.055 0.945
30 H 0.031 0.969
31 H 0.078 0.922
32 H 0.273 0.727
33 H 0.183 0.817
34 H 0.206 0.794
Dipole moment (debyes) X Y Z Total
from point charges -9.823 -24.530 3.215 26.619
hybrid contribution 0.922 0.672 -0.724 1.351
sum -8.901 -23.858 2.491 25.586
Atomic orbital electron populations
1.22225 0.76884 1.03887 1.03248 1.48117 1.09146 1.05841 1.66856
1.19068 0.91538 0.79016 0.96764 1.21589 1.37419 1.06933 0.92694
0.92799 1.25787 0.94718 0.96233 1.01891 1.70017 1.38522 1.14778
1.33002 0.85490 0.78788 0.77470 0.79237 1.18770 1.20267 1.20143
1.19994 0.87367 0.85307 0.80250 1.90744 1.14907 1.87115 1.50410
1.20143 0.87309 0.84835 0.76761 1.90686 1.13360 1.86780 1.45860
1.42981 1.12119 1.02504 1.70871 1.17726 0.95065 0.85183 0.99332
1.21061 0.93396 0.97670 0.98272 1.20588 0.91338 0.93558 0.99770
1.98412 1.28409 1.98118 1.75258 1.20480 0.94786 0.88498 1.01096
1.98417 1.75120 1.28841 1.97209 1.20979 0.92909 0.97764 1.00309
1.17303 0.84947 0.94018 0.96386 1.91575 1.43865 1.96645 1.78117
0.90873 0.90954 0.88987 0.94512 0.96862 0.92189 0.72670 0.81697
0.79396
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.08 2.62 9.26 127.77 1.18 3.80 16
2 N -0.57 -23.95 2.86 -852.86 -2.44 -26.39 16
3 C 0.26 13.23 5.09 85.63 0.44 13.67 16
4 C -0.55 -30.56 9.39 25.60 0.24 -30.32 16
5 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16
6 C 0.01 0.76 5.46 84.66 0.46 1.22 16
7 N -0.92 -53.89 13.29 21.45 0.28 -53.60 16
8 Si 0.97 43.66 29.54 68.60 2.03 45.69 16
9 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16
10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16
11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16
12 C 0.49 19.66 7.72 87.23 0.67 20.33 16
13 O -0.55 -25.70 16.12 -3.29 -0.05 -25.76 16
14 C 0.53 16.32 7.62 87.23 0.66 16.98 16
15 O -0.49 -14.79 10.59 -3.37 -0.04 -14.83 16
16 N -0.64 -16.28 5.22 -304.65 -1.59 -17.87 16
17 C 0.12 2.67 6.33 38.22 0.24 2.92 16
18 C -0.08 -1.74 8.50 22.41 0.19 -1.54 16
19 C -0.02 -0.44 6.32 22.33 0.14 -0.30 16
20 Cl -0.03 -0.55 27.95 -2.72 -0.08 -0.63 16
21 C -0.02 -0.31 6.32 22.36 0.14 -0.17 16
22 Cl -0.03 -0.35 27.95 -2.72 -0.08 -0.43 16
23 C -0.10 -1.40 9.80 22.31 0.22 -1.18 16
24 C 0.10 1.76 7.31 22.49 0.16 1.92 16
25 F -0.12 -2.47 16.94 44.97 0.76 -1.71 16
26 H 0.07 2.11 8.13 -2.39 -0.02 2.09 16
27 H 0.07 2.39 8.03 -2.39 -0.02 2.37 16
28 H 0.09 2.86 5.85 -2.39 -0.01 2.84 16
29 H 0.04 1.91 8.07 -2.38 -0.02 1.89 16
30 H 0.01 0.77 7.51 -2.39 -0.02 0.75 16
31 H 0.27 14.76 8.31 -92.70 -0.77 13.99 16
32 H 0.43 10.59 8.11 -92.71 -0.75 9.84 16
33 H 0.17 3.75 6.07 -2.91 -0.02 3.73 16
34 H 0.19 1.58 8.06 -2.91 -0.02 1.56 16
Total: -1.00 -63.90 336.83 4.01 -59.89
By element:
Atomic # 1 Polarization: 7.86 SS G_CDS: 0.44 Total: 8.31 kcal
Atomic # 6 Polarization: 22.56 SS G_CDS: 4.76 Total: 27.32 kcal
Atomic # 7 Polarization: -94.13 SS G_CDS: -3.74 Total: -97.87 kcal
Atomic # 8 Polarization: -40.49 SS G_CDS: -0.09 Total: -40.58 kcal
Atomic # 9 Polarization: -2.47 SS G_CDS: 0.76 Total: -1.71 kcal
Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal
Atomic # 17 Polarization: -0.90 SS G_CDS: -0.15 Total: -1.05 kcal
Total: -63.90 4.01 -59.89 kcal
The number of atoms in the molecule is 34
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000283189526.mol2 34
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -39.243 kcal
(2) G-P(sol) polarization free energy of solvation -63.901 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.144 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.894 kcal
(6) G-S(sol) free energy of system = (1) + (5) -99.137 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.44 seconds