Wall clock time and date at job start Wed Apr 1 2020 05:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 C 1.46500 * 119.99880 * 2 1 4 4 C 1.50693 * 109.47057 * 269.99951 * 3 2 1 5 5 H 1.07994 * 120.00487 * 0.02562 * 4 3 2 6 6 C 1.37883 * 120.00046 * 180.02562 * 4 3 2 7 7 N 1.31511 * 119.99851 * 359.97438 * 6 4 3 8 8 Si 1.86804 * 120.00135 * 180.02562 * 6 4 3 9 9 H 1.48501 * 109.46785 * 60.00062 * 8 6 4 10 10 H 1.48494 * 109.46841 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46951 * 300.00033 * 8 6 4 12 12 C 1.34779 * 120.00064 * 179.97438 * 2 1 3 13 13 O 1.21363 * 119.99794 * 174.34287 * 12 2 1 14 14 C 1.49333 * 119.99905 * 354.34502 * 12 2 1 15 15 O 1.21389 * 120.00283 * 359.72359 * 14 12 2 16 16 N 1.34781 * 119.99976 * 179.72124 * 14 12 2 17 17 C 1.39855 * 120.00197 * 185.16146 * 16 14 12 18 18 C 1.38857 * 120.06641 * 326.45031 * 17 16 14 19 19 C 1.38212 * 119.94854 * 179.97438 * 18 17 16 20 20 Cl 1.73598 * 119.95962 * 180.02562 * 19 18 17 21 21 C 1.38515 * 120.08473 * 359.97438 * 19 18 17 22 22 Cl 1.73594 * 119.93868 * 179.97438 * 21 19 18 23 23 C 1.38358 * 120.12807 * 0.02562 * 21 19 18 24 24 C 1.38295 * 120.05050 * 359.97438 * 23 21 19 25 25 F 1.35105 * 120.04312 * 179.97438 * 24 23 21 26 26 H 1.08996 * 109.46854 * 264.05811 * 1 2 3 27 27 H 1.09000 * 109.47348 * 24.06377 * 1 2 3 28 28 H 1.08997 * 109.46712 * 144.06225 * 1 2 3 29 29 H 1.09005 * 109.46981 * 30.00036 * 3 2 1 30 30 H 1.09001 * 109.47338 * 150.00018 * 3 2 1 31 31 H 0.97005 * 120.00021 * 180.02562 * 7 6 4 32 32 H 0.97002 * 119.99387 * 5.16638 * 16 14 12 33 33 H 1.08001 * 120.02787 * 0.25332 * 18 17 16 34 34 H 1.07994 * 119.97789 * 179.97438 * 23 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4487 1.7037 -1.4208 5 1 2.0975 1.0962 -2.2416 6 6 3.1269 2.8775 -1.6727 7 7 3.5542 3.6176 -0.6731 8 14 3.4376 3.4171 -3.4339 9 1 2.1398 3.5955 -4.1332 10 1 4.1802 4.7031 -3.4339 11 1 4.2393 2.3820 -4.1346 12 6 2.1390 -1.1672 0.0005 13 8 3.3482 -1.1698 -0.1031 14 6 1.3977 -2.4573 0.1285 15 8 0.1887 -2.4545 0.2372 16 7 2.0711 -3.6248 0.1234 17 6 1.3715 -4.8357 0.1344 18 6 0.1641 -4.9354 0.8129 19 6 -0.5256 -6.1331 0.8217 20 17 -2.0354 -6.2579 1.6694 21 6 -0.0141 -7.2338 0.1542 22 17 -0.8832 -8.7364 0.1683 23 6 1.1886 -7.1382 -0.5229 24 6 1.8833 -5.9424 -0.5353 25 9 3.0580 -5.8493 -1.1961 26 1 -0.3633 -0.1064 1.0221 27 1 -0.3634 0.9383 -0.4190 28 1 -0.3632 -0.8320 -0.6031 29 1 1.6084 2.0284 0.5139 30 1 3.1500 1.1385 0.5138 31 1 4.0310 4.4435 -0.8504 32 1 3.0411 -3.6251 0.1122 33 1 -0.2380 -4.0765 1.3296 34 1 1.5854 -7.9980 -1.0422 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000283189526.mol2 34 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:49 Heat of formation + Delta-G solvation = -99.137054 kcal Electronic energy + Delta-G solvation = -25124.946269 eV Core-core repulsion = 20831.398648 eV Total energy + Delta-G solvation = -4293.547621 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 348.023 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.22622 -42.33598 -40.64594 -39.45594 -37.85175 -37.68328 -37.09684 -35.83529 -34.67187 -31.99370 -30.92787 -30.03310 -27.82192 -26.48008 -25.06264 -24.23626 -23.03798 -21.23152 -19.63552 -18.88462 -18.78437 -18.70281 -17.94635 -17.62468 -17.22746 -16.92553 -16.84061 -16.58245 -16.15177 -15.46761 -15.40181 -15.01753 -14.92186 -14.84363 -14.27496 -14.17240 -13.89637 -13.71907 -13.43976 -13.16297 -13.01091 -12.92601 -12.75742 -12.61265 -12.37565 -12.24933 -12.20244 -12.03762 -11.77350 -11.43082 -10.65447 -10.51511 -10.11440 -9.68051 -9.45794 -8.25388 -6.39693 -0.65238 -0.33844 0.28342 0.62877 0.87245 1.14036 1.39391 1.42121 1.50014 1.87223 2.12238 2.33434 2.45244 2.78011 3.05190 3.14098 3.30941 3.64983 3.83343 4.06592 4.29069 4.41534 4.48724 4.65910 4.69310 4.74912 4.86018 5.03038 5.12956 5.28092 5.39910 5.61784 5.72249 5.98005 6.23854 6.50249 6.65964 6.91163 7.30536 8.82055 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.020637 B = 0.002491 C = 0.002332 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1356.478927 B =11235.555860 C =12002.294794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.569 5.569 3 C 0.256 3.744 4 C -0.548 4.548 5 H 0.054 0.946 6 C 0.014 3.986 7 N -0.924 5.924 8 Si 0.966 3.034 9 H -0.263 1.263 10 H -0.278 1.278 11 H -0.276 1.276 12 C 0.489 3.511 13 O -0.552 6.552 14 C 0.527 3.473 15 O -0.493 6.493 16 N -0.637 5.637 17 C 0.123 3.877 18 C -0.083 4.083 19 C -0.024 4.024 20 Cl -0.031 7.031 21 C -0.020 4.020 22 Cl -0.025 7.025 23 C -0.100 4.100 24 C 0.096 3.904 25 F -0.124 7.124 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.092 0.908 29 H 0.037 0.963 30 H 0.013 0.987 31 H 0.269 0.731 32 H 0.433 0.567 33 H 0.166 0.834 34 H 0.189 0.811 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.504 -24.685 3.097 26.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 N -0.300 5.300 3 C 0.136 3.864 4 C -0.586 4.586 5 H 0.072 0.928 6 C -0.186 4.186 7 N -0.563 5.563 8 Si 0.790 3.210 9 H -0.188 1.188 10 H -0.203 1.203 11 H -0.201 1.201 12 C 0.271 3.729 13 O -0.432 6.432 14 C 0.310 3.690 15 O -0.367 6.367 16 N -0.285 5.285 17 C 0.027 3.973 18 C -0.104 4.104 19 C -0.053 4.053 20 Cl -0.002 7.002 21 C -0.049 4.049 22 Cl 0.004 6.996 23 C -0.120 4.120 24 C 0.073 3.927 25 F -0.102 7.102 26 H 0.091 0.909 27 H 0.090 0.910 28 H 0.110 0.890 29 H 0.055 0.945 30 H 0.031 0.969 31 H 0.078 0.922 32 H 0.273 0.727 33 H 0.183 0.817 34 H 0.206 0.794 Dipole moment (debyes) X Y Z Total from point charges -9.823 -24.530 3.215 26.619 hybrid contribution 0.922 0.672 -0.724 1.351 sum -8.901 -23.858 2.491 25.586 Atomic orbital electron populations 1.22225 0.76884 1.03887 1.03248 1.48117 1.09146 1.05841 1.66856 1.19068 0.91538 0.79016 0.96764 1.21589 1.37419 1.06933 0.92694 0.92799 1.25787 0.94718 0.96233 1.01891 1.70017 1.38522 1.14778 1.33002 0.85490 0.78788 0.77470 0.79237 1.18770 1.20267 1.20143 1.19994 0.87367 0.85307 0.80250 1.90744 1.14907 1.87115 1.50410 1.20143 0.87309 0.84835 0.76761 1.90686 1.13360 1.86780 1.45860 1.42981 1.12119 1.02504 1.70871 1.17726 0.95065 0.85183 0.99332 1.21061 0.93396 0.97670 0.98272 1.20588 0.91338 0.93558 0.99770 1.98412 1.28409 1.98118 1.75258 1.20480 0.94786 0.88498 1.01096 1.98417 1.75120 1.28841 1.97209 1.20979 0.92909 0.97764 1.00309 1.17303 0.84947 0.94018 0.96386 1.91575 1.43865 1.96645 1.78117 0.90873 0.90954 0.88987 0.94512 0.96862 0.92189 0.72670 0.81697 0.79396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 2.62 9.26 127.77 1.18 3.80 16 2 N -0.57 -23.95 2.86 -852.86 -2.44 -26.39 16 3 C 0.26 13.23 5.09 85.63 0.44 13.67 16 4 C -0.55 -30.56 9.39 25.60 0.24 -30.32 16 5 H 0.05 2.99 7.81 -2.91 -0.02 2.97 16 6 C 0.01 0.76 5.46 84.66 0.46 1.22 16 7 N -0.92 -53.89 13.29 21.45 0.28 -53.60 16 8 Si 0.97 43.66 29.54 68.60 2.03 45.69 16 9 H -0.26 -11.28 7.11 99.48 0.71 -10.58 16 10 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 12 C 0.49 19.66 7.72 87.23 0.67 20.33 16 13 O -0.55 -25.70 16.12 -3.29 -0.05 -25.76 16 14 C 0.53 16.32 7.62 87.23 0.66 16.98 16 15 O -0.49 -14.79 10.59 -3.37 -0.04 -14.83 16 16 N -0.64 -16.28 5.22 -304.65 -1.59 -17.87 16 17 C 0.12 2.67 6.33 38.22 0.24 2.92 16 18 C -0.08 -1.74 8.50 22.41 0.19 -1.54 16 19 C -0.02 -0.44 6.32 22.33 0.14 -0.30 16 20 Cl -0.03 -0.55 27.95 -2.72 -0.08 -0.63 16 21 C -0.02 -0.31 6.32 22.36 0.14 -0.17 16 22 Cl -0.03 -0.35 27.95 -2.72 -0.08 -0.43 16 23 C -0.10 -1.40 9.80 22.31 0.22 -1.18 16 24 C 0.10 1.76 7.31 22.49 0.16 1.92 16 25 F -0.12 -2.47 16.94 44.97 0.76 -1.71 16 26 H 0.07 2.11 8.13 -2.39 -0.02 2.09 16 27 H 0.07 2.39 8.03 -2.39 -0.02 2.37 16 28 H 0.09 2.86 5.85 -2.39 -0.01 2.84 16 29 H 0.04 1.91 8.07 -2.38 -0.02 1.89 16 30 H 0.01 0.77 7.51 -2.39 -0.02 0.75 16 31 H 0.27 14.76 8.31 -92.70 -0.77 13.99 16 32 H 0.43 10.59 8.11 -92.71 -0.75 9.84 16 33 H 0.17 3.75 6.07 -2.91 -0.02 3.73 16 34 H 0.19 1.58 8.06 -2.91 -0.02 1.56 16 Total: -1.00 -63.90 336.83 4.01 -59.89 By element: Atomic # 1 Polarization: 7.86 SS G_CDS: 0.44 Total: 8.31 kcal Atomic # 6 Polarization: 22.56 SS G_CDS: 4.76 Total: 27.32 kcal Atomic # 7 Polarization: -94.13 SS G_CDS: -3.74 Total: -97.87 kcal Atomic # 8 Polarization: -40.49 SS G_CDS: -0.09 Total: -40.58 kcal Atomic # 9 Polarization: -2.47 SS G_CDS: 0.76 Total: -1.71 kcal Atomic # 14 Polarization: 43.66 SS G_CDS: 2.03 Total: 45.69 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.15 Total: -1.05 kcal Total: -63.90 4.01 -59.89 kcal The number of atoms in the molecule is 34 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000283189526.mol2 34 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.243 kcal (2) G-P(sol) polarization free energy of solvation -63.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.894 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.137 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds