Wall clock time and date at job start Wed Apr 1 2020 05:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47006 * 211.15476 * 3 2 1 5 5 C 1.36932 * 119.99980 * 87.18447 * 4 3 2 6 6 H 1.08005 * 120.00354 * 177.80135 * 5 4 3 7 7 C 1.38816 * 120.00074 * 357.79712 * 5 4 3 8 8 N 1.31615 * 119.99800 * 335.52651 * 7 5 4 9 9 Si 1.86797 * 120.00143 * 155.52555 * 7 5 4 10 10 H 1.48502 * 109.47142 * 90.00225 * 9 7 5 11 11 H 1.48497 * 109.47449 * 210.00067 * 9 7 5 12 12 H 1.48503 * 109.47353 * 330.00363 * 9 7 5 13 13 S 1.65603 * 120.00099 * 266.90431 * 4 3 2 14 14 O 1.42102 * 106.40350 * 203.54076 * 13 4 3 15 15 O 1.42096 * 106.40021 * 336.46439 * 13 4 3 16 16 C 1.76204 * 107.21711 * 90.00369 * 13 4 3 17 17 C 1.35424 * 126.91776 * 270.02634 * 16 13 4 18 18 Br 1.89095 * 126.75933 * 359.97438 * 17 16 13 19 19 N 1.33802 * 106.47936 * 179.97438 * 17 16 13 20 20 N 1.28634 * 108.89814 * 359.97438 * 19 17 16 21 21 N 1.28709 * 110.19915 * 359.75510 * 20 19 17 22 22 C 1.46503 * 125.86876 * 180.25985 * 21 20 19 23 23 H 4.40637 * 5.51439 * 179.97438 * 4 1 2 24 24 H 1.09003 * 109.46738 * 91.15578 * 3 2 1 25 25 H 1.08991 * 109.47289 * 331.15743 * 3 2 1 26 26 H 0.97002 * 120.00267 * 179.97438 * 8 7 5 27 27 H 1.08995 * 109.46923 * 270.15305 * 22 21 20 28 28 H 1.08999 * 109.46607 * 30.15312 * 22 21 20 29 29 H 1.08997 * 109.46949 * 150.15330 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1829 0.7146 5 6 3.3070 1.1392 2.0722 6 1 3.7002 1.9990 2.5944 7 6 2.9773 -0.0101 2.7774 8 7 2.0884 -0.8492 2.2895 9 14 3.7952 -0.3659 4.4186 10 1 2.9923 0.2369 5.5128 11 1 3.8828 -1.8345 4.6202 12 1 5.1610 0.2173 4.4279 13 16 3.4821 2.5699 -0.1204 14 8 4.4079 3.2961 0.6764 15 8 3.7504 2.1757 -1.4590 16 6 2.0071 3.5325 -0.1713 17 6 1.0412 3.4912 -1.1195 18 35 1.0086 2.3873 -2.6545 19 7 0.1143 4.3853 -0.7563 20 7 0.4814 4.9426 0.3434 21 7 1.6081 4.4574 0.7330 22 6 2.3356 4.8427 1.9449 23 1 -1.0502 -0.0002 -0.0003 24 1 3.0092 0.0216 -1.0275 25 1 3.0097 -0.8993 0.4957 26 1 1.8582 -1.6525 2.7821 27 1 3.0103 5.6678 1.7167 28 1 1.6257 5.1550 2.7108 29 1 2.9118 3.9920 2.3086 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000304134886.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:46 Heat of formation + Delta-G solvation = 112.667954 kcal Electronic energy + Delta-G solvation = -21523.979208 eV Core-core repulsion = 18047.152124 eV Total energy + Delta-G solvation = -3476.827084 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.968 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -42.80622 -36.64290 -36.11372 -34.58316 -34.24657 -32.36480 -31.84386 -31.34267 -29.39089 -27.58851 -26.87033 -24.10566 -22.40260 -21.77160 -18.85907 -18.23754 -17.70121 -16.88475 -16.63265 -16.18631 -15.58338 -14.91971 -14.63210 -14.01940 -13.51571 -13.49460 -13.17342 -12.75848 -12.65350 -12.09980 -12.09096 -11.47544 -11.26413 -11.14084 -11.03789 -10.93938 -10.84749 -10.68289 -10.51379 -10.39892 -9.96699 -9.78560 -9.59036 -9.36674 -9.01113 -8.79069 -8.56216 -7.00003 -4.28471 1.26300 1.65550 1.68009 2.60519 2.81722 2.85157 2.94582 3.02897 3.56099 3.75747 4.06345 4.28806 4.38260 4.77650 4.85929 4.98026 5.31867 5.46131 5.54345 5.68438 5.94341 6.02688 6.14281 6.57846 6.71526 6.74882 6.91160 7.04155 7.77421 8.14184 8.58325 8.61530 8.79117 9.88713 Molecular weight = 347.97amu Principal moments of inertia in cm(-1) A = 0.015356 B = 0.006843 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.936540 B = 4090.763074 C = 4723.245730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.253 4.253 2 C -0.122 4.122 3 C 0.223 3.777 4 N -0.764 5.764 5 C -0.216 4.216 6 H 0.127 0.873 7 C 0.026 3.974 8 N -0.790 5.790 9 Si 0.938 3.062 10 H -0.270 1.270 11 H -0.273 1.273 12 H -0.257 1.257 13 S 2.472 3.528 14 O -0.982 6.982 15 O -0.966 6.966 16 C -0.508 4.508 17 C 0.041 3.959 18 Br 0.052 6.948 19 N -0.261 5.261 20 N -0.077 5.077 21 N -0.226 5.226 22 C 0.072 3.928 23 H 0.196 0.804 24 H 0.087 0.913 25 H 0.128 0.872 26 H 0.285 0.715 27 H 0.098 0.902 28 H 0.101 0.899 29 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.026 0.648 -0.297 0.714 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.272 4.272 2 C -0.124 4.124 3 C 0.098 3.902 4 N -0.584 5.584 5 C -0.370 4.370 6 H 0.144 0.856 7 C -0.190 4.190 8 N -0.429 5.429 9 Si 0.761 3.239 10 H -0.195 1.195 11 H -0.198 1.198 12 H -0.180 1.180 13 S 2.565 3.435 14 O -0.971 6.971 15 O -0.954 6.954 16 C -0.712 4.712 17 C -0.179 4.179 18 Br 0.134 6.866 19 N -0.127 5.127 20 N -0.058 5.058 21 N -0.020 5.020 22 C -0.069 4.069 23 H 0.213 0.787 24 H 0.105 0.895 25 H 0.145 0.855 26 H 0.096 0.904 27 H 0.116 0.884 28 H 0.119 0.881 29 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.533 1.695 -1.197 2.142 hybrid contribution -0.278 -0.325 1.072 1.154 sum -0.811 1.370 -0.125 1.597 Atomic orbital electron populations 1.24245 0.95350 1.02081 1.05528 1.23270 0.94442 0.98727 0.95969 1.18902 0.84140 0.90746 0.96425 1.56492 1.67782 1.17938 1.16211 1.20481 1.30760 1.01858 0.83917 0.85560 1.25834 0.95581 0.96873 1.00699 1.70265 1.23267 1.11508 1.37838 0.85712 0.80364 0.78691 0.79145 1.19521 1.19767 1.18042 1.16080 0.79167 0.73078 0.75214 1.93305 1.62333 1.72590 1.68873 1.93415 1.84890 1.80666 1.36421 1.37309 1.28118 1.09400 0.96394 1.23171 0.94732 1.01786 0.98163 1.96722 1.98579 1.61345 1.29992 1.75033 1.23473 1.08217 1.05985 1.78043 0.99414 1.19751 1.08613 1.46835 1.14137 1.23287 1.17740 1.22627 0.96924 1.04947 0.82397 0.78671 0.89524 0.85530 0.90388 0.88399 0.88066 0.86323 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -5.09 19.25 29.55 0.57 -4.52 15 2 C -0.12 -2.56 11.66 -37.12 -0.43 -3.00 15 3 C 0.22 4.61 5.44 -6.83 -0.04 4.57 15 4 N -0.76 -16.48 2.88 -62.78 -0.18 -16.66 15 5 C -0.22 -4.55 9.47 -15.06 -0.14 -4.69 15 6 H 0.13 2.51 6.35 -52.48 -0.33 2.17 15 7 C 0.03 0.53 5.02 -17.43 -0.09 0.44 15 8 N -0.79 -16.49 8.93 55.49 0.50 -15.99 15 9 Si 0.94 15.69 29.62 -169.99 -5.03 10.66 15 10 H -0.27 -4.53 7.11 56.52 0.40 -4.13 15 11 H -0.27 -4.56 7.11 56.52 0.40 -4.16 15 12 H -0.26 -4.28 7.11 56.52 0.40 -3.88 15 13 S 2.47 54.71 5.60 -107.50 -0.60 54.10 15 14 O -0.98 -22.27 14.71 -57.17 -0.84 -23.11 15 15 O -0.97 -22.36 14.75 -57.17 -0.84 -23.20 15 16 C -0.51 -11.09 7.06 -17.00 -0.12 -11.21 15 17 C 0.04 0.91 7.72 -17.70 -0.14 0.77 15 18 Br 0.05 1.02 32.30 -68.01 -2.20 -1.17 15 19 N -0.26 -5.80 12.41 31.52 0.39 -5.41 15 20 N -0.08 -1.61 13.16 60.35 0.79 -0.82 15 21 N -0.23 -4.54 3.74 -67.12 -0.25 -4.79 15 22 C 0.07 1.10 10.52 59.85 0.63 1.73 15 23 H 0.20 3.39 7.80 -54.08 -0.42 2.97 15 24 H 0.09 1.71 6.95 -51.93 -0.36 1.35 15 25 H 0.13 2.59 6.02 -51.93 -0.31 2.27 15 26 H 0.28 5.55 8.31 -40.82 -0.34 5.21 15 27 H 0.10 1.30 8.14 -51.93 -0.42 0.88 15 28 H 0.10 1.22 8.14 -51.93 -0.42 0.80 15 29 H 0.12 1.87 5.88 -51.93 -0.31 1.57 15 LS Contribution 293.16 15.07 4.42 4.42 Total: -1.00 -27.51 293.16 -5.32 -32.83 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -1.71 Total: 5.06 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 0.24 Total: -15.91 kcal Atomic # 7 Polarization: -44.92 SS G_CDS: 1.25 Total: -43.67 kcal Atomic # 8 Polarization: -44.62 SS G_CDS: -1.68 Total: -46.31 kcal Atomic # 14 Polarization: 15.69 SS G_CDS: -5.03 Total: 10.66 kcal Atomic # 16 Polarization: 54.71 SS G_CDS: -0.60 Total: 54.10 kcal Atomic # 35 Polarization: 1.02 SS G_CDS: -2.20 Total: -1.17 kcal Total LS contribution 4.42 Total: 4.42 kcal Total: -27.51 -5.32 -32.83 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304134886.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 145.501 kcal (2) G-P(sol) polarization free energy of solvation -27.511 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 117.991 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.833 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.668 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds