Wall clock time and date at job start Wed Apr 1 2020 05:11:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47006 * 211.15476 * 3 2 1 5 5 C 1.36932 * 119.99980 * 87.18447 * 4 3 2 6 6 H 1.08005 * 120.00354 * 177.80135 * 5 4 3 7 7 C 1.38816 * 120.00074 * 357.79712 * 5 4 3 8 8 N 1.31615 * 119.99800 * 335.52651 * 7 5 4 9 9 Si 1.86797 * 120.00143 * 155.52555 * 7 5 4 10 10 H 1.48502 * 109.47142 * 90.00225 * 9 7 5 11 11 H 1.48497 * 109.47449 * 210.00067 * 9 7 5 12 12 H 1.48503 * 109.47353 * 330.00363 * 9 7 5 13 13 S 1.65603 * 120.00099 * 266.90431 * 4 3 2 14 14 O 1.42102 * 106.40350 * 203.54076 * 13 4 3 15 15 O 1.42096 * 106.40021 * 336.46439 * 13 4 3 16 16 C 1.76204 * 107.21711 * 90.00369 * 13 4 3 17 17 C 1.35424 * 126.91776 * 270.02634 * 16 13 4 18 18 Br 1.89095 * 126.75933 * 359.97438 * 17 16 13 19 19 N 1.33802 * 106.47936 * 179.97438 * 17 16 13 20 20 N 1.28634 * 108.89814 * 359.97438 * 19 17 16 21 21 N 1.28709 * 110.19915 * 359.75510 * 20 19 17 22 22 C 1.46503 * 125.86876 * 180.25985 * 21 20 19 23 23 H 4.40637 * 5.51439 * 179.97438 * 4 1 2 24 24 H 1.09003 * 109.46738 * 91.15578 * 3 2 1 25 25 H 1.08991 * 109.47289 * 331.15743 * 3 2 1 26 26 H 0.97002 * 120.00267 * 179.97438 * 8 7 5 27 27 H 1.08995 * 109.46923 * 270.15305 * 22 21 20 28 28 H 1.08999 * 109.46607 * 30.15312 * 22 21 20 29 29 H 1.08997 * 109.46949 * 150.15330 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1337 1.1829 0.7146 5 6 3.3070 1.1392 2.0722 6 1 3.7002 1.9990 2.5944 7 6 2.9773 -0.0101 2.7774 8 7 2.0884 -0.8492 2.2895 9 14 3.7952 -0.3659 4.4186 10 1 2.9923 0.2369 5.5128 11 1 3.8828 -1.8345 4.6202 12 1 5.1610 0.2173 4.4279 13 16 3.4821 2.5699 -0.1204 14 8 4.4079 3.2961 0.6764 15 8 3.7504 2.1757 -1.4590 16 6 2.0071 3.5325 -0.1713 17 6 1.0412 3.4912 -1.1195 18 35 1.0086 2.3873 -2.6545 19 7 0.1143 4.3853 -0.7563 20 7 0.4814 4.9426 0.3434 21 7 1.6081 4.4574 0.7330 22 6 2.3356 4.8427 1.9449 23 1 -1.0502 -0.0002 -0.0003 24 1 3.0092 0.0216 -1.0275 25 1 3.0097 -0.8993 0.4957 26 1 1.8582 -1.6525 2.7821 27 1 3.0103 5.6678 1.7167 28 1 1.6257 5.1550 2.7108 29 1 2.9118 3.9920 2.3086 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000304134886.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:46 Heat of formation + Delta-G solvation = 94.027144 kcal Electronic energy + Delta-G solvation = -21524.787534 eV Core-core repulsion = 18047.152124 eV Total energy + Delta-G solvation = -3477.635411 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 347.968 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -44.36192 -38.28329 -37.71859 -36.19999 -35.74007 -34.01133 -33.40286 -32.96653 -30.94790 -28.95716 -28.49902 -25.72771 -23.96073 -23.28552 -20.45550 -19.82234 -19.25845 -18.47586 -18.21270 -17.72846 -17.14957 -16.54260 -16.14866 -15.53133 -15.11360 -15.05718 -14.47562 -14.26262 -14.02010 -13.71377 -13.61867 -13.07815 -12.77631 -12.61539 -12.58818 -12.51388 -12.36121 -12.28821 -12.04916 -11.91503 -11.50931 -11.31250 -11.15598 -10.97769 -10.62959 -10.37032 -10.17039 -8.62592 -5.92516 -0.32631 0.08477 0.11141 0.97659 1.41394 1.52085 1.60990 1.73871 2.00443 2.28038 2.45146 2.69797 2.77082 3.21000 3.31169 3.60661 3.91616 4.03050 4.19103 4.31522 4.46419 4.55979 4.63031 4.95864 5.11394 5.26982 5.30148 5.45122 6.13934 6.46565 6.92563 7.02254 7.18527 8.25668 Molecular weight = 347.97amu Principal moments of inertia in cm(-1) A = 0.015356 B = 0.006843 C = 0.005927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1822.936540 B = 4090.763074 C = 4723.245730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.251 4.251 2 C -0.143 4.143 3 C 0.219 3.781 4 N -0.756 5.756 5 C -0.209 4.209 6 H 0.139 0.861 7 C -0.002 4.002 8 N -0.794 5.794 9 Si 1.003 2.997 10 H -0.265 1.265 11 H -0.269 1.269 12 H -0.253 1.253 13 S 2.434 3.566 14 O -0.999 6.999 15 O -0.989 6.989 16 C -0.517 4.517 17 C 0.023 3.977 18 Br 0.063 6.937 19 N -0.281 5.281 20 N -0.082 5.082 21 N -0.222 5.222 22 C 0.057 3.943 23 H 0.219 0.781 24 H 0.089 0.911 25 H 0.128 0.872 26 H 0.295 0.705 27 H 0.117 0.883 28 H 0.134 0.866 29 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.004 -0.250 1.917 1.933 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.270 4.270 2 C -0.146 4.146 3 C 0.095 3.905 4 N -0.574 5.574 5 C -0.368 4.368 6 H 0.156 0.844 7 C -0.218 4.218 8 N -0.432 5.432 9 Si 0.822 3.178 10 H -0.189 1.189 11 H -0.193 1.193 12 H -0.177 1.177 13 S 2.530 3.470 14 O -0.988 6.988 15 O -0.977 6.977 16 C -0.721 4.721 17 C -0.197 4.197 18 Br 0.144 6.856 19 N -0.147 5.147 20 N -0.064 5.064 21 N -0.016 5.016 22 C -0.082 4.082 23 H 0.235 0.765 24 H 0.107 0.893 25 H 0.145 0.855 26 H 0.106 0.894 27 H 0.135 0.865 28 H 0.152 0.848 29 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -0.509 0.845 0.942 1.364 hybrid contribution -0.310 -0.266 0.589 0.717 sum -0.819 0.579 1.532 1.831 Atomic orbital electron populations 1.24868 0.96138 1.01280 1.04698 1.23453 0.94842 0.99514 0.96779 1.18981 0.84318 0.90508 0.96735 1.57191 1.66126 1.17555 1.16496 1.21168 1.28714 1.02515 0.84441 0.84413 1.26734 0.95585 0.96024 1.03446 1.70317 1.22952 1.11398 1.38509 0.84751 0.79429 0.78602 0.74975 1.18941 1.19305 1.17691 1.18945 0.79883 0.73166 0.75025 1.93227 1.63734 1.73079 1.68753 1.93332 1.85592 1.80848 1.37950 1.37573 1.28337 1.09582 0.96624 1.23451 0.95025 1.02290 0.98962 1.96686 1.98581 1.61022 1.29297 1.74982 1.24175 1.08827 1.06718 1.77945 1.00024 1.19872 1.08534 1.47214 1.13738 1.22390 1.18296 1.23057 0.97961 1.05427 0.81752 0.76468 0.89313 0.85471 0.89408 0.86519 0.84779 0.86774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 27. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -9.78 19.25 74.32 1.43 -8.35 15 2 C -0.14 -5.92 11.66 31.12 0.36 -5.55 15 3 C 0.22 8.95 5.44 84.57 0.46 9.41 15 4 N -0.76 -32.12 2.88 -352.53 -1.02 -33.13 15 5 C -0.21 -8.42 9.47 84.04 0.80 -7.63 15 6 H 0.14 5.19 6.35 -2.91 -0.02 5.17 15 7 C 0.00 -0.06 5.02 84.86 0.43 0.37 15 8 N -0.79 -31.10 8.93 21.65 0.19 -30.90 15 9 Si 1.00 29.20 29.62 68.60 2.03 31.23 15 10 H -0.26 -7.57 7.11 99.48 0.71 -6.86 15 11 H -0.27 -7.68 7.11 99.48 0.71 -6.97 15 12 H -0.25 -7.31 7.11 99.48 0.71 -6.60 15 13 S 2.43 108.39 5.60 -56.49 -0.32 108.07 15 14 O -1.00 -45.41 14.71 -128.00 -1.88 -47.29 15 15 O -0.99 -46.79 14.75 -128.00 -1.89 -48.68 15 16 C -0.52 -22.64 7.06 83.50 0.59 -22.05 15 17 C 0.02 1.01 7.72 83.74 0.65 1.65 15 18 Br 0.06 2.49 32.30 -20.37 -0.66 1.83 15 19 N -0.28 -12.54 12.41 -54.19 -0.67 -13.21 15 20 N -0.08 -3.42 13.16 37.02 0.49 -2.94 15 21 N -0.22 -8.77 3.74 -366.27 -1.37 -10.14 15 22 C 0.06 1.66 10.52 127.77 1.34 3.00 15 23 H 0.22 7.14 7.80 -4.41 -0.03 7.11 15 24 H 0.09 3.55 6.95 -2.39 -0.02 3.53 15 25 H 0.13 5.08 6.02 -2.39 -0.01 5.06 15 26 H 0.29 10.60 8.31 -92.71 -0.77 9.83 15 27 H 0.12 2.94 8.14 -2.39 -0.02 2.92 15 28 H 0.13 2.92 8.14 -2.39 -0.02 2.90 15 29 H 0.11 3.46 5.88 -2.39 -0.01 3.45 15 Total: -1.00 -56.95 293.16 2.18 -54.77 By element: Atomic # 1 Polarization: 18.32 SS G_CDS: 1.21 Total: 19.53 kcal Atomic # 6 Polarization: -35.20 SS G_CDS: 6.06 Total: -29.14 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -2.38 Total: -90.33 kcal Atomic # 8 Polarization: -92.20 SS G_CDS: -3.77 Total: -95.97 kcal Atomic # 14 Polarization: 29.20 SS G_CDS: 2.03 Total: 31.23 kcal Atomic # 16 Polarization: 108.39 SS G_CDS: -0.32 Total: 108.07 kcal Atomic # 35 Polarization: 2.49 SS G_CDS: -0.66 Total: 1.83 kcal Total: -56.95 2.18 -54.77 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000304134886.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.801 kcal (2) G-P(sol) polarization free energy of solvation -56.954 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 91.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.774 kcal (6) G-S(sol) free energy of system = (1) + (5) 94.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds