Wall clock time and date at job start Wed Apr 1 2020 04:36:52
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46896 * 1
3 3 C 1.46955 * 111.00233 * 2 1
4 4 C 1.53049 * 109.36962 * 176.80960 * 3 2 1
5 5 N 1.46956 * 109.37889 * 58.38792 * 4 3 2
6 6 C 1.38409 * 110.99759 * 176.82522 * 5 4 3
7 7 N 1.32493 * 119.22023 * 359.72915 * 6 5 4
8 8 C 1.32272 * 120.74221 * 179.71774 * 7 6 5
9 9 C 1.38607 * 119.19729 * 0.54856 * 8 7 6
10 10 C 1.50701 * 120.71982 * 179.70949 * 9 8 7
11 11 N 1.46903 * 109.47030 * 270.02119 * 10 9 8
12 12 C 1.46894 * 111.00053 * 180.02562 * 11 10 9
13 13 C 1.52995 * 109.47253 * 179.97438 * 12 11 10
14 14 C 1.52997 * 109.47206 * 299.99725 * 13 12 11
15 15 C 1.53006 * 109.47176 * 59.99817 * 13 12 11
16 16 C 1.53004 * 109.47395 * 179.97438 * 13 12 11
17 17 C 1.50695 * 109.47282 * 180.02562 * 16 13 12
18 18 H 1.08003 * 120.00170 * 0.02562 * 17 16 13
19 19 C 1.37875 * 120.00136 * 180.02562 * 17 16 13
20 20 N 1.31515 * 120.00143 * 179.97438 * 19 17 16
21 21 Si 1.86805 * 119.99942 * 359.97438 * 19 17 16
22 22 H 1.48500 * 109.47149 * 90.00180 * 21 19 17
23 23 H 1.48499 * 109.47076 * 210.00351 * 21 19 17
24 24 H 1.48499 * 109.46991 * 330.00163 * 21 19 17
25 25 C 1.38605 * 118.55685 * 359.72757 * 9 8 7
26 26 N 1.32272 * 119.19981 * 0.02562 * 25 9 8
27 27 C 1.46957 * 110.88202 * 300.71439 * 5 4 3
28 28 C 1.46955 * 111.00423 * 236.19937 * 2 1 3
29 29 H 1.09008 * 109.47123 * 59.99941 * 1 2 3
30 30 H 1.08999 * 109.47347 * 180.02562 * 1 2 3
31 31 H 1.09002 * 109.47073 * 300.00316 * 1 2 3
32 32 H 1.09005 * 109.49150 * 56.83886 * 3 2 1
33 33 H 1.08999 * 109.50586 * 296.79217 * 3 2 1
34 34 H 1.09002 * 109.49200 * 178.36943 * 4 3 2
35 35 H 1.09002 * 109.48985 * 298.41362 * 4 3 2
36 36 H 1.07998 * 120.40297 * 180.30312 * 8 7 6
37 37 H 1.08997 * 109.47237 * 30.02058 * 10 9 8
38 38 H 1.08999 * 109.46971 * 150.02475 * 10 9 8
39 39 H 1.00907 * 110.99769 * 303.95576 * 11 10 9
40 40 H 1.09002 * 109.46879 * 299.99659 * 12 11 10
41 41 H 1.09003 * 109.47164 * 59.99660 * 12 11 10
42 42 H 1.09000 * 109.47202 * 60.00047 * 14 13 12
43 43 H 1.08999 * 109.47132 * 179.97438 * 14 13 12
44 44 H 1.08997 * 109.47129 * 299.99733 * 14 13 12
45 45 H 1.09000 * 109.46928 * 59.99620 * 15 13 12
46 46 H 1.08999 * 109.47235 * 179.97438 * 15 13 12
47 47 H 1.09004 * 109.46591 * 300.00068 * 15 13 12
48 48 H 1.09002 * 109.47078 * 299.99978 * 16 13 12
49 49 H 1.09003 * 109.46823 * 59.99891 * 16 13 12
50 50 H 0.97007 * 120.00051 * 179.97438 * 20 19 17
51 51 H 1.07999 * 120.40313 * 180.02562 * 25 9 8
52 52 H 1.08997 * 109.47347 * 299.31758 * 27 5 4
53 53 H 1.09002 * 109.50396 * 179.27890 * 27 5 4
54 54 H 1.09002 * 109.48806 * 303.15815 * 28 2 1
55 55 H 1.09003 * 109.48675 * 63.21848 * 28 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4690 0.0000 0.0000
3 6 1.9957 1.3719 0.0000
4 6 3.5234 1.3291 0.0804
5 7 4.0505 0.5657 -1.0594
6 6 5.4346 0.5657 -1.0588
7 7 6.0810 1.2137 -0.1009
8 6 7.4032 1.2288 -0.0681
9 6 8.1117 0.5658 -1.0579
10 6 9.6187 0.5662 -1.0575
11 7 10.1082 1.7173 -1.8278
12 6 11.5766 1.7500 -1.8498
13 6 12.0478 2.9594 -2.6599
14 6 11.5186 2.8518 -4.0914
15 6 11.5187 4.2423 -2.0156
16 6 13.5773 2.9938 -2.6823
17 6 14.0413 4.1853 -3.4796
18 1 13.3177 4.8517 -3.9255
19 6 15.3896 4.4248 -3.6400
20 7 15.7946 5.4644 -4.3363
21 14 16.6412 3.2726 -2.8682
22 1 16.9729 2.1882 -3.8270
23 1 17.8729 4.0318 -2.5341
24 1 16.0726 2.6819 -1.6301
25 6 7.4040 -0.0972 -2.0482
26 7 6.0817 -0.0773 -2.0198
27 6 3.5234 -0.8061 -1.0597
28 6 1.9957 -0.7632 -1.1400
29 1 -0.3634 0.5139 -0.8900
30 1 -0.3634 -1.0276 0.0005
31 1 -0.3633 0.5139 0.8900
32 1 1.6013 1.9129 0.8602
33 1 1.6937 1.8777 -0.9171
34 1 3.9178 2.3449 0.0513
35 1 3.8253 0.8483 1.0109
36 1 7.9245 1.7546 0.7181
37 1 9.9818 0.6344 -0.0321
38 1 9.9824 -0.3557 -1.5113
39 1 9.7328 1.7116 -2.7645
40 1 11.9536 1.8262 -0.8299
41 1 11.9535 0.8362 -2.3092
42 1 10.4290 2.8276 -4.0752
43 1 11.8539 3.7137 -4.6684
44 1 11.8956 1.9379 -4.5504
45 1 11.8956 4.3189 -0.9957
46 1 11.8547 5.1039 -2.5924
47 1 10.4290 4.2180 -1.9993
48 1 13.9539 3.0706 -1.6623
49 1 13.9545 2.0798 -3.1411
50 1 16.7432 5.6331 -4.4488
51 1 7.9258 -0.6238 -2.8336
52 1 3.8253 -1.3115 -0.1424
53 1 3.9178 -1.3473 -1.9197
54 1 1.6014 -1.7790 -1.1110
55 1 1.6938 -0.2821 -2.0704
RHF calculation, no. of doubly occupied orbitals= 67
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000342284648.mol2 55
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 04:36:52
Heat of formation + Delta-G solvation = 48.650474 kcal
Electronic energy + Delta-G solvation = -30246.028101 eV
Core-core repulsion = 26317.416809 eV
Total energy + Delta-G solvation = -3928.611291 eV
No. of doubly occupied orbitals = 67
Molecular weight
(most abundant/longest-lived isotopes) = 347.238 amu
Computer time = 0.88 seconds
Orbital eigenvalues (eV)
-42.33910 -40.19672 -39.19759 -37.01726 -35.81313 -34.79527 -34.32502 -32.29411
-32.06820 -29.83254 -29.22053 -27.90889 -27.16144 -26.06059 -25.73744 -24.67474
-24.24426 -23.57654 -22.70722 -21.01896 -19.49586 -19.00568 -18.85018 -18.71649
-16.89985 -16.68216 -16.39323 -16.28178 -16.11699 -15.94521 -15.75621 -15.71836
-15.43424 -15.24743 -14.89661 -14.77717 -14.51416 -14.41290 -14.31349 -13.97357
-13.56629 -13.49543 -13.31128 -13.11877 -12.79366 -12.76968 -12.73773 -12.42095
-12.38787 -12.18695 -12.09740 -12.04795 -12.02026 -11.93191 -11.82222 -11.69725
-11.34404 -11.15912 -10.94019 -10.77880 -10.68251 -10.17696 -9.49195 -9.37248
-9.19375 -8.20020 -6.20566 -0.10259 0.14689 1.37443 1.39700 1.50581
2.07730 2.41253 2.67339 2.89939 3.15270 3.15295 3.42181 3.59697
3.74036 3.82965 3.87598 3.94184 3.99031 4.09751 4.15778 4.16651
4.23961 4.29219 4.35192 4.48787 4.60394 4.62184 4.66767 4.72459
4.76017 4.80065 4.80703 4.83733 4.86121 4.94665 4.95915 5.02343
5.04013 5.06632 5.11421 5.20954 5.24237 5.39897 5.47388 5.52426
5.54409 5.64331 5.68473 5.77943 5.84462 5.96912 5.99329 6.10911
6.20737 6.43513 6.50610 6.87365 7.10553 7.42024 8.96321
Molecular weight = 347.24amu
Principal moments of inertia in cm(-1)
A = 0.032824 B = 0.001607 C = 0.001590
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 852.819355 B =17420.690374 C =17610.015211
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.026 3.974
2 N -0.558 5.558
3 C 0.058 3.942
4 C 0.079 3.921
5 N -0.472 5.472
6 C 0.472 3.528
7 N -0.565 5.565
8 C 0.186 3.814
9 C -0.207 4.207
10 C 0.116 3.884
11 N -0.686 5.686
12 C 0.082 3.918
13 C -0.050 4.050
14 C -0.124 4.124
15 C -0.108 4.108
16 C -0.002 4.002
17 C -0.505 4.505
18 H 0.041 0.959
19 C -0.001 4.001
20 N -0.957 5.957
21 Si 0.943 3.057
22 H -0.271 1.271
23 H -0.291 1.291
24 H -0.246 1.246
25 C 0.174 3.826
26 N -0.548 5.548
27 C 0.075 3.925
28 C 0.060 3.940
29 H 0.028 0.972
30 H 0.079 0.921
31 H 0.077 0.923
32 H 0.102 0.898
33 H 0.040 0.960
34 H 0.084 0.916
35 H 0.052 0.948
36 H 0.186 0.814
37 H 0.093 0.907
38 H 0.057 0.943
39 H 0.342 0.658
40 H 0.072 0.928
41 H 0.035 0.965
42 H 0.062 0.938
43 H 0.032 0.968
44 H 0.047 0.953
45 H 0.040 0.960
46 H 0.023 0.977
47 H 0.063 0.937
48 H 0.015 0.985
49 H 0.014 0.986
50 H 0.261 0.739
51 H 0.190 0.810
52 H 0.044 0.956
53 H 0.095 0.905
54 H 0.105 0.895
55 H 0.043 0.957
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -29.312 -17.245 11.129 35.783
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.122 4.122
2 N -0.283 5.283
3 C -0.070 4.070
4 C -0.048 4.048
5 N -0.192 5.192
6 C 0.116 3.884
7 N -0.285 5.285
8 C 0.019 3.981
9 C -0.213 4.213
10 C -0.014 4.014
11 N -0.318 5.318
12 C -0.047 4.047
13 C -0.051 4.051
14 C -0.182 4.182
15 C -0.166 4.166
16 C -0.040 4.040
17 C -0.543 4.543
18 H 0.059 0.941
19 C -0.197 4.197
20 N -0.599 5.599
21 Si 0.767 3.233
22 H -0.196 1.196
23 H -0.217 1.217
24 H -0.169 1.169
25 C 0.007 3.993
26 N -0.266 5.266
27 C -0.052 4.052
28 C -0.068 4.068
29 H 0.047 0.953
30 H 0.098 0.902
31 H 0.096 0.904
32 H 0.120 0.880
33 H 0.058 0.942
34 H 0.102 0.898
35 H 0.070 0.930
36 H 0.202 0.798
37 H 0.111 0.889
38 H 0.075 0.925
39 H 0.161 0.839
40 H 0.090 0.910
41 H 0.053 0.947
42 H 0.081 0.919
43 H 0.051 0.949
44 H 0.066 0.934
45 H 0.059 0.941
46 H 0.042 0.958
47 H 0.081 0.919
48 H 0.034 0.966
49 H 0.032 0.968
50 H 0.070 0.930
51 H 0.207 0.793
52 H 0.062 0.938
53 H 0.113 0.887
54 H 0.123 0.877
55 H 0.061 0.939
Dipole moment (debyes) X Y Z Total
from point charges -30.331 -16.743 11.610 36.539
hybrid contribution 2.221 -0.224 -0.980 2.437
sum -28.110 -16.966 10.631 34.512
Atomic orbital electron populations
1.22398 0.85347 1.03083 1.01336 1.62218 1.09525 1.13787 1.42796
1.22246 0.92878 0.89797 1.02075 1.22046 0.94378 0.98462 0.89938
1.58674 1.00984 1.16478 1.43100 1.21234 0.91290 0.89453 0.86402
1.68397 1.11469 1.23518 1.25078 1.23347 0.88056 0.90386 0.96313
1.21449 0.98559 1.02365 0.98880 1.20647 0.87669 0.92538 1.00539
1.60538 1.07790 1.43066 1.20449 1.21869 0.87014 0.95937 0.99918
1.20375 0.94574 0.95151 0.94969 1.21692 0.99591 1.00811 0.96072
1.21506 0.99942 0.96273 0.98850 1.19589 0.93668 0.95045 0.95695
1.21461 0.91831 1.10001 1.30985 0.94109 1.25961 1.01027 0.96870
0.95810 1.70080 1.15688 1.30660 1.43433 0.85765 0.78162 0.79054
0.80269 1.19599 1.21715 1.16913 1.23438 0.88147 0.91942 0.95786
1.68026 1.10977 1.22948 1.24604 1.22242 0.95593 0.85208 1.02111
1.22206 0.92380 1.00093 0.92098 0.95300 0.90223 0.90375 0.87996
0.94208 0.89779 0.92957 0.79753 0.88918 0.92537 0.83910 0.90954
0.94694 0.91904 0.94928 0.93354 0.94083 0.95780 0.91851 0.96645
0.96785 0.92980 0.79313 0.93772 0.88683 0.87700 0.93907
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 13.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.03 0.22 9.60 127.69 1.23 1.45 16
2 N -0.56 -7.32 4.97 -921.94 -4.58 -11.90 16
3 C 0.06 0.80 5.62 86.31 0.49 1.29 16
4 C 0.08 1.43 4.77 86.31 0.41 1.84 16
5 N -0.47 -9.80 4.77 -708.32 -3.38 -13.18 16
6 C 0.47 11.08 7.17 261.48 1.88 12.96 16
7 N -0.57 -12.93 8.69 -197.98 -1.72 -14.65 16
8 C 0.19 3.59 11.00 84.71 0.93 4.53 16
9 C -0.21 -3.62 5.43 -19.69 -0.11 -3.73 16
10 C 0.12 1.86 5.86 85.56 0.50 2.36 16
11 N -0.69 -14.88 5.70 -517.95 -2.95 -17.83 16
12 C 0.08 2.17 4.65 86.30 0.40 2.57 16
13 C -0.05 -1.79 0.60 -52.18 -0.03 -1.82 16
14 C -0.12 -4.32 7.89 71.98 0.57 -3.75 16
15 C -0.11 -4.00 8.06 71.98 0.58 -3.42 16
16 C 0.00 -0.09 3.11 29.85 0.09 0.00 16
17 C -0.50 -28.11 8.20 25.60 0.21 -27.90 16
18 H 0.04 2.52 5.92 -2.91 -0.02 2.50 16
19 C 0.00 -0.07 5.47 84.65 0.46 0.39 16
20 N -0.96 -60.19 13.96 21.45 0.30 -59.89 16
21 Si 0.94 44.09 27.47 68.60 1.88 45.98 16
22 H -0.27 -12.20 7.11 99.48 0.71 -11.50 16
23 H -0.29 -13.58 7.11 99.48 0.71 -12.88 16
24 H -0.25 -10.56 6.54 99.48 0.65 -9.91 16
25 C 0.17 3.17 11.00 84.71 0.93 4.10 16
26 N -0.55 -12.44 9.72 -197.98 -1.92 -14.36 16
27 C 0.07 1.26 5.46 86.31 0.47 1.73 16
28 C 0.06 0.78 5.62 86.31 0.49 1.26 16
29 H 0.03 0.25 8.14 -2.38 -0.02 0.23 16
30 H 0.08 0.53 8.13 -2.39 -0.02 0.51 16
31 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16
32 H 0.10 1.08 8.14 -2.38 -0.02 1.06 16
33 H 0.04 0.59 8.14 -2.39 -0.02 0.57 16
34 H 0.08 1.64 7.80 -2.39 -0.02 1.62 16
35 H 0.05 1.03 8.04 -2.39 -0.02 1.01 16
36 H 0.19 2.82 8.06 -2.91 -0.02 2.79 16
37 H 0.09 1.37 8.10 -2.39 -0.02 1.35 16
38 H 0.06 0.78 8.10 -2.39 -0.02 0.76 16
39 H 0.34 7.41 6.76 -89.69 -0.61 6.80 16
40 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16
41 H 0.03 0.88 8.14 -2.39 -0.02 0.86 16
42 H 0.06 1.81 6.57 -2.39 -0.02 1.79 16
43 H 0.03 1.36 6.62 -2.39 -0.02 1.34 16
44 H 0.05 1.58 8.14 -2.39 -0.02 1.56 16
45 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16
46 H 0.02 1.03 6.61 -2.39 -0.02 1.01 16
47 H 0.06 2.07 7.60 -2.38 -0.02 2.05 16
48 H 0.02 0.68 7.20 -2.39 -0.02 0.67 16
49 H 0.01 0.61 7.57 -2.39 -0.02 0.59 16
50 H 0.26 15.49 8.31 -92.70 -0.77 14.72 16
51 H 0.19 2.38 8.06 -2.91 -0.02 2.36 16
52 H 0.04 0.80 8.14 -2.39 -0.02 0.78 16
53 H 0.09 1.64 7.64 -2.39 -0.02 1.62 16
54 H 0.10 0.96 8.13 -2.39 -0.02 0.94 16
55 H 0.04 0.60 8.14 -2.39 -0.02 0.58 16
Total: -1.00 -69.64 422.20 -2.68 -72.32
By element:
Atomic # 1 Polarization: 19.46 SS G_CDS: 0.20 Total: 19.65 kcal
Atomic # 6 Polarization: -15.64 SS G_CDS: 9.50 Total: -6.15 kcal
Atomic # 7 Polarization: -117.54 SS G_CDS: -14.26 Total: -131.80 kcal
Atomic # 14 Polarization: 44.09 SS G_CDS: 1.88 Total: 45.98 kcal
Total: -69.64 -2.68 -72.32 kcal
The number of atoms in the molecule is 55
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000342284648.mol2 55
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 120.971 kcal
(2) G-P(sol) polarization free energy of solvation -69.638 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.333 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.683 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.321 kcal
(6) G-S(sol) free energy of system = (1) + (5) 48.650 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.88 seconds