Wall clock time and date at job start Wed Apr 1 2020 05:32:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46875 * 184.14497 * 3 2 1 5 5 C 1.37097 * 119.99930 * 96.68399 * 4 3 2 6 6 H 1.08003 * 119.99905 * 160.47906 * 5 4 3 7 7 C 1.38947 * 120.00299 * 340.47131 * 5 4 3 8 8 N 1.31411 * 119.99826 * 336.41486 * 7 5 4 9 9 Si 1.86803 * 120.00078 * 156.40592 * 7 5 4 10 10 H 1.48499 * 109.47563 * 265.59724 * 9 7 5 11 11 H 1.48496 * 109.46938 * 145.59259 * 9 7 5 12 12 H 1.48502 * 109.46909 * 25.59538 * 9 7 5 13 13 C 1.34774 * 119.99955 * 276.68858 * 4 3 2 14 14 O 1.21293 * 120.00200 * 180.02562 * 13 4 3 15 15 C 1.50704 * 119.99859 * 359.97438 * 13 4 3 16 16 H 1.08990 * 115.55444 * 325.58770 * 15 13 4 17 17 C 1.53008 * 117.49390 * 111.26115 * 15 13 4 18 18 C 1.53006 * 117.49707 * 179.91429 * 15 13 4 19 19 H 1.08999 * 117.49959 * 0.02562 * 18 15 13 20 20 C 1.50702 * 117.49584 * 145.02399 * 18 15 13 21 21 C 1.38242 * 119.98794 * 59.72626 * 20 18 15 22 22 C 1.38218 * 120.00516 * 179.76692 * 21 20 18 23 23 C 1.38323 * 119.99230 * 0.50510 * 22 21 20 24 24 Br 1.89101 * 120.01288 * 179.72275 * 23 22 21 25 25 C 1.38329 * 119.97706 * 359.75124 * 23 22 21 26 26 C 1.38211 * 119.99083 * 359.97438 * 25 23 22 27 27 H 1.09001 * 109.47341 * 64.14787 * 3 2 1 28 28 H 1.08996 * 109.47229 * 304.14311 * 3 2 1 29 29 H 0.97007 * 119.99570 * 179.97438 * 8 7 5 30 30 H 1.09009 * 117.49267 * 214.98143 * 17 15 13 31 31 H 1.08994 * 117.49901 * 359.97090 * 17 15 13 32 32 H 1.07999 * 119.99787 * 0.02562 * 21 20 18 33 33 H 1.07999 * 120.00246 * 180.27634 * 22 21 20 34 34 H 1.08004 * 120.00215 * 180.02562 * 25 23 22 35 35 H 1.08001 * 119.99397 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3785 0.0998 5 6 3.4542 1.8921 1.3194 6 1 4.0939 2.7607 1.3726 7 6 2.9945 1.2953 2.4869 8 7 1.8966 0.5736 2.4676 9 14 3.9374 1.5188 4.0839 10 1 4.8689 0.3777 4.2728 11 1 2.9821 1.5712 5.2196 12 1 4.7110 2.7852 4.0290 13 6 3.1918 2.1412 -1.0072 14 8 3.5960 3.2819 -0.9246 15 6 2.7981 1.5765 -2.3478 16 1 3.0067 0.5164 -2.4910 17 6 1.5435 2.1459 -3.0133 18 6 2.9281 2.4929 -3.5661 19 1 3.2987 3.5041 -3.3981 20 6 3.3342 1.8604 -4.8723 21 6 2.5526 0.8666 -5.4314 22 6 2.9222 0.2897 -6.6318 23 6 4.0798 0.6994 -7.2684 24 35 4.5902 -0.0951 -8.9068 25 6 4.8644 1.6901 -6.7059 26 6 4.4910 2.2705 -5.5084 27 1 2.9716 -0.4473 -0.9248 28 1 2.9716 -0.5759 0.8505 29 1 1.5759 0.1566 3.2827 30 1 0.9269 1.4601 -3.5946 31 1 1.0027 2.9285 -2.4813 32 1 1.6508 0.5440 -4.9322 33 1 2.3091 -0.4836 -7.0707 34 1 5.7682 2.0106 -7.2029 35 1 5.1038 3.0437 -5.0690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000346767099.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:57 Heat of formation + Delta-G solvation = 57.669549 kcal Electronic energy + Delta-G solvation = -21311.073835 eV Core-core repulsion = 17935.791328 eV Total energy + Delta-G solvation = -3375.282508 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 348.021 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.01517 -38.84528 -36.49563 -35.52898 -34.29499 -32.22418 -31.83850 -31.18644 -29.26130 -27.53970 -25.65269 -23.70005 -23.15710 -22.50629 -20.39405 -18.90612 -17.92754 -17.40329 -16.46096 -16.25571 -15.49312 -15.12654 -14.85780 -14.41172 -14.16343 -13.69292 -13.53272 -13.44690 -13.18281 -13.01857 -12.30754 -11.97281 -11.84912 -11.72005 -11.55992 -11.40260 -11.24639 -11.20612 -11.03705 -10.63317 -10.47321 -10.46060 -10.39837 -10.21279 -10.09822 -9.30126 -9.16946 -8.73645 -8.47764 -8.08394 -6.56602 -4.04991 0.91737 1.17423 1.45656 3.03358 3.19515 3.23664 3.28588 3.47249 3.69663 3.94658 4.07515 4.29016 4.44133 4.64460 4.75300 4.82776 4.87418 5.04481 5.08861 5.19731 5.22121 5.39466 5.43041 5.53407 5.61212 5.77547 5.92082 6.03763 6.06060 6.10462 6.23922 6.30595 6.41236 6.56718 6.67680 7.42456 7.86075 8.22599 8.71298 8.94432 9.14114 9.69023 10.49702 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.024043 B = 0.002333 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.302159 B =12000.229184 C =12323.783985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.469 5.469 2 C 0.245 3.755 3 C 0.222 3.778 4 N -0.436 5.436 5 C -0.318 4.318 6 H 0.109 0.891 7 C 0.034 3.966 8 N -0.870 5.870 9 Si 0.925 3.075 10 H -0.275 1.275 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.483 3.517 14 O -0.572 6.572 15 C -0.157 4.157 16 H 0.116 0.884 17 C -0.146 4.146 18 C -0.100 4.100 19 H 0.128 0.872 20 C -0.022 4.022 21 C -0.117 4.117 22 C -0.087 4.087 23 C -0.100 4.100 24 Br -0.062 7.062 25 C -0.088 4.088 26 C -0.105 4.105 27 H 0.085 0.915 28 H 0.123 0.877 29 H 0.274 0.726 30 H 0.100 0.900 31 H 0.102 0.898 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.131 0.869 35 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.420 -4.317 -19.897 21.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.149 5.149 2 C -0.073 4.073 3 C 0.094 3.906 4 N -0.155 5.155 5 C -0.445 4.445 6 H 0.127 0.873 7 C -0.170 4.170 8 N -0.508 5.508 9 Si 0.752 3.248 10 H -0.201 1.201 11 H -0.211 1.211 12 H -0.192 1.192 13 C 0.271 3.729 14 O -0.455 6.455 15 C -0.179 4.179 16 H 0.134 0.866 17 C -0.183 4.183 18 C -0.119 4.119 19 H 0.146 0.854 20 C -0.023 4.023 21 C -0.136 4.136 22 C -0.107 4.107 23 C -0.179 4.179 24 Br 0.024 6.976 25 C -0.108 4.108 26 C -0.124 4.124 27 H 0.103 0.897 28 H 0.141 0.859 29 H 0.084 0.916 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.152 0.848 33 H 0.149 0.851 34 H 0.149 0.851 35 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 4.038 -4.151 -20.293 21.103 hybrid contribution 0.549 0.053 1.399 1.503 sum 4.587 -4.098 -18.894 19.870 Atomic orbital electron populations 1.80883 1.13519 1.08309 1.12150 1.29235 0.95302 0.92626 0.90178 1.18695 0.81796 0.87027 1.03094 1.43535 1.56050 1.09063 1.06838 1.19721 1.28682 1.15479 0.80573 0.87344 1.25294 0.94830 0.97217 0.99695 1.69908 1.17454 1.33455 1.29987 0.85917 0.79288 0.79125 0.80500 1.20117 1.21092 1.19219 1.19145 0.83788 0.85695 0.84259 1.90540 1.50598 1.18215 1.86125 1.22416 1.03738 0.99094 0.92629 0.86625 1.23051 0.89812 1.03366 1.02073 1.21101 1.00767 1.00414 0.89621 0.85397 1.19404 0.93932 0.94569 0.94372 1.21146 1.00422 0.96638 0.95349 1.21058 0.95035 0.99530 0.95091 1.21732 0.99600 1.01740 0.94820 1.96687 1.91978 1.81762 1.27218 1.21079 0.99115 0.94968 0.95644 1.21057 0.96401 1.00425 0.94542 0.89705 0.85918 0.91595 0.88150 0.87910 0.84812 0.85120 0.85075 0.84734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.47 -10.74 18.54 42.15 0.78 -9.95 16 2 C 0.25 5.21 13.40 -20.76 -0.28 4.93 16 3 C 0.22 4.23 4.91 -6.82 -0.03 4.20 16 4 N -0.44 -9.86 2.60 -117.93 -0.31 -10.17 16 5 C -0.32 -7.99 9.27 -14.93 -0.14 -8.13 16 6 H 0.11 2.90 7.43 -52.48 -0.39 2.51 16 7 C 0.03 0.83 4.78 -17.47 -0.08 0.74 16 8 N -0.87 -21.57 9.74 55.50 0.54 -21.03 16 9 Si 0.93 19.18 29.61 -169.99 -5.03 14.15 16 10 H -0.28 -5.53 7.11 56.52 0.40 -5.12 16 11 H -0.29 -6.02 7.11 56.52 0.40 -5.62 16 12 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 13 C 0.48 10.55 7.34 -10.98 -0.08 10.47 16 14 O -0.57 -14.48 15.92 5.55 0.09 -14.39 16 15 C -0.16 -2.59 4.76 -91.76 -0.44 -3.03 16 16 H 0.12 1.64 6.55 -51.93 -0.34 1.30 16 17 C -0.15 -2.16 9.56 -26.69 -0.26 -2.42 16 18 C -0.10 -1.45 5.56 -91.73 -0.51 -1.96 16 19 H 0.13 2.02 7.67 -51.93 -0.40 1.63 16 20 C -0.02 -0.27 5.61 -104.62 -0.59 -0.86 16 21 C -0.12 -1.29 9.29 -39.59 -0.37 -1.66 16 22 C -0.09 -0.90 9.79 -39.56 -0.39 -1.29 16 23 C -0.10 -1.06 6.22 -39.52 -0.25 -1.30 16 24 Br -0.06 -0.59 33.70 -68.01 -2.29 -2.88 16 25 C -0.09 -0.92 9.79 -39.56 -0.39 -1.31 16 26 C -0.11 -1.19 9.74 -39.59 -0.39 -1.58 16 27 H 0.09 1.24 6.30 -51.93 -0.33 0.91 16 28 H 0.12 2.40 6.60 -51.93 -0.34 2.05 16 29 H 0.27 6.57 8.31 -40.82 -0.34 6.23 16 30 H 0.10 1.25 6.18 -51.92 -0.32 0.93 16 31 H 0.10 1.70 8.14 -51.93 -0.42 1.28 16 32 H 0.13 1.33 6.03 -52.49 -0.32 1.02 16 33 H 0.13 1.13 8.06 -52.49 -0.42 0.71 16 34 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 35 H 0.13 1.39 8.06 -52.49 -0.42 0.96 16 LS Contribution 328.84 15.07 4.96 4.96 Total: -1.00 -29.55 328.84 -8.71 -38.26 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: -3.26 Total: 4.26 kcal Atomic # 6 Polarization: 0.98 SS G_CDS: -4.18 Total: -3.20 kcal Atomic # 7 Polarization: -42.17 SS G_CDS: 1.02 Total: -41.15 kcal Atomic # 8 Polarization: -14.48 SS G_CDS: 0.09 Total: -14.39 kcal Atomic # 14 Polarization: 19.18 SS G_CDS: -5.03 Total: 14.15 kcal Atomic # 35 Polarization: -0.59 SS G_CDS: -2.29 Total: -2.88 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -29.55 -8.71 -38.26 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346767099.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.930 kcal (2) G-P(sol) polarization free energy of solvation -29.555 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.260 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds