Wall clock time and date at job start Wed Apr 1 2020 05:32:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13596 * 1 3 3 C 1.47207 * 179.97438 * 2 1 4 4 N 1.46504 * 109.46875 * 184.14497 * 3 2 1 5 5 C 1.37097 * 119.99930 * 96.68399 * 4 3 2 6 6 H 1.08003 * 119.99905 * 160.47906 * 5 4 3 7 7 C 1.38947 * 120.00299 * 340.47131 * 5 4 3 8 8 N 1.31411 * 119.99826 * 336.41486 * 7 5 4 9 9 Si 1.86803 * 120.00078 * 156.40592 * 7 5 4 10 10 H 1.48499 * 109.47563 * 265.59724 * 9 7 5 11 11 H 1.48496 * 109.46938 * 145.59259 * 9 7 5 12 12 H 1.48502 * 109.46909 * 25.59538 * 9 7 5 13 13 C 1.34774 * 119.99955 * 276.68858 * 4 3 2 14 14 O 1.21293 * 120.00200 * 180.02562 * 13 4 3 15 15 C 1.50704 * 119.99859 * 359.97438 * 13 4 3 16 16 H 1.08990 * 115.55444 * 325.58770 * 15 13 4 17 17 C 1.53008 * 117.49390 * 111.26115 * 15 13 4 18 18 C 1.53006 * 117.49707 * 179.91429 * 15 13 4 19 19 H 1.08999 * 117.49959 * 0.02562 * 18 15 13 20 20 C 1.50702 * 117.49584 * 145.02399 * 18 15 13 21 21 C 1.38242 * 119.98794 * 59.72626 * 20 18 15 22 22 C 1.38218 * 120.00516 * 179.76692 * 21 20 18 23 23 C 1.38323 * 119.99230 * 0.50510 * 22 21 20 24 24 Br 1.89101 * 120.01288 * 179.72275 * 23 22 21 25 25 C 1.38329 * 119.97706 * 359.75124 * 23 22 21 26 26 C 1.38211 * 119.99083 * 359.97438 * 25 23 22 27 27 H 1.09001 * 109.47341 * 64.14787 * 3 2 1 28 28 H 1.08996 * 109.47229 * 304.14311 * 3 2 1 29 29 H 0.97007 * 119.99570 * 179.97438 * 8 7 5 30 30 H 1.09009 * 117.49267 * 214.98143 * 17 15 13 31 31 H 1.08994 * 117.49901 * 359.97090 * 17 15 13 32 32 H 1.07999 * 119.99787 * 0.02562 * 21 20 18 33 33 H 1.07999 * 120.00246 * 180.27634 * 22 21 20 34 34 H 1.08004 * 120.00215 * 180.02562 * 25 23 22 35 35 H 1.08001 * 119.99397 * 179.97438 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0957 1.3785 0.0998 5 6 3.4542 1.8921 1.3194 6 1 4.0939 2.7607 1.3726 7 6 2.9945 1.2953 2.4869 8 7 1.8966 0.5736 2.4676 9 14 3.9374 1.5188 4.0839 10 1 4.8689 0.3777 4.2728 11 1 2.9821 1.5712 5.2196 12 1 4.7110 2.7852 4.0290 13 6 3.1918 2.1412 -1.0072 14 8 3.5960 3.2819 -0.9246 15 6 2.7981 1.5765 -2.3478 16 1 3.0067 0.5164 -2.4910 17 6 1.5435 2.1459 -3.0133 18 6 2.9281 2.4929 -3.5661 19 1 3.2987 3.5041 -3.3981 20 6 3.3342 1.8604 -4.8723 21 6 2.5526 0.8666 -5.4314 22 6 2.9222 0.2897 -6.6318 23 6 4.0798 0.6994 -7.2684 24 35 4.5902 -0.0951 -8.9068 25 6 4.8644 1.6901 -6.7059 26 6 4.4910 2.2705 -5.5084 27 1 2.9716 -0.4473 -0.9248 28 1 2.9716 -0.5759 0.8505 29 1 1.5759 0.1566 3.2827 30 1 0.9269 1.4601 -3.5946 31 1 1.0027 2.9285 -2.4813 32 1 1.6508 0.5440 -4.9322 33 1 2.3091 -0.4836 -7.0707 34 1 5.7682 2.0106 -7.2029 35 1 5.1038 3.0437 -5.0690 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000346767099.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:56 Heat of formation + Delta-G solvation = 43.287238 kcal Electronic energy + Delta-G solvation = -21311.697499 eV Core-core repulsion = 17935.791328 eV Total energy + Delta-G solvation = -3375.906171 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 348.021 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.23030 -40.15349 -37.91248 -37.11020 -36.06280 -33.75881 -33.00596 -31.99711 -30.14600 -29.20592 -27.33597 -24.70911 -24.54145 -23.46946 -21.44004 -20.43406 -19.70232 -18.64003 -18.03012 -17.53531 -16.84809 -16.23799 -16.05250 -15.85922 -15.48256 -15.14887 -14.77801 -14.67516 -14.39539 -14.26037 -13.86034 -13.50660 -13.42214 -13.14969 -12.91323 -12.89586 -12.46040 -12.32822 -12.28550 -12.14820 -12.09135 -11.95249 -11.36899 -11.26742 -11.21654 -11.08562 -10.44933 -9.96912 -9.92212 -9.41706 -8.42586 -5.97390 0.05216 0.36812 0.67097 1.37722 1.48677 1.58933 1.75930 1.98570 2.28116 2.36321 2.51903 2.93517 3.02165 3.14464 3.57410 3.62458 3.80532 3.84722 3.98635 4.00197 4.11603 4.20967 4.38866 4.52790 4.62218 4.67633 4.77125 4.84302 5.00070 5.05498 5.09109 5.25565 5.31696 5.48246 5.63298 5.84498 6.03995 6.39101 7.03951 7.11199 7.34523 7.92535 8.61611 Molecular weight = 348.02amu Principal moments of inertia in cm(-1) A = 0.024043 B = 0.002333 C = 0.002271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1164.302159 B =12000.229184 C =12323.783985 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.501 5.501 2 C 0.257 3.743 3 C 0.222 3.778 4 N -0.449 5.449 5 C -0.345 4.345 6 H 0.081 0.919 7 C 0.009 3.991 8 N -0.887 5.887 9 Si 0.984 3.016 10 H -0.258 1.258 11 H -0.287 1.287 12 H -0.277 1.277 13 C 0.476 3.524 14 O -0.618 6.618 15 C -0.167 4.167 16 H 0.146 0.854 17 C -0.139 4.139 18 C -0.083 4.083 19 H 0.107 0.893 20 C -0.036 4.036 21 C -0.115 4.115 22 C -0.088 4.088 23 C -0.105 4.105 24 Br -0.051 7.051 25 C -0.090 4.090 26 C -0.112 4.112 27 H 0.138 0.862 28 H 0.120 0.880 29 H 0.275 0.725 30 H 0.132 0.868 31 H 0.079 0.921 32 H 0.148 0.852 33 H 0.150 0.850 34 H 0.147 0.853 35 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.724 -6.033 -21.382 22.942 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.181 5.181 2 C -0.061 4.061 3 C 0.095 3.905 4 N -0.167 5.167 5 C -0.473 4.473 6 H 0.099 0.901 7 C -0.194 4.194 8 N -0.525 5.525 9 Si 0.809 3.191 10 H -0.183 1.183 11 H -0.213 1.213 12 H -0.202 1.202 13 C 0.266 3.734 14 O -0.504 6.504 15 C -0.188 4.188 16 H 0.164 0.836 17 C -0.176 4.176 18 C -0.101 4.101 19 H 0.125 0.875 20 C -0.036 4.036 21 C -0.133 4.133 22 C -0.108 4.108 23 C -0.184 4.184 24 Br 0.034 6.966 25 C -0.109 4.109 26 C -0.131 4.131 27 H 0.155 0.845 28 H 0.138 0.862 29 H 0.085 0.915 30 H 0.150 0.850 31 H 0.097 0.903 32 H 0.165 0.835 33 H 0.167 0.833 34 H 0.165 0.835 35 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 4.338 -5.896 -21.791 22.988 hybrid contribution 0.471 0.639 1.782 1.950 sum 4.809 -5.258 -20.009 21.240 Atomic orbital electron populations 1.80883 1.14539 1.09295 1.13407 1.29629 0.95687 0.91643 0.89126 1.19018 0.80463 0.85350 1.05652 1.43704 1.56146 1.10532 1.06344 1.19594 1.29508 1.15721 0.82435 0.90145 1.25884 0.95099 0.96639 1.01789 1.69979 1.17982 1.33850 1.30640 0.85049 0.78107 0.79067 0.76900 1.18277 1.21346 1.20181 1.20048 0.82204 0.85177 0.85946 1.90503 1.52308 1.20404 1.87213 1.22336 1.05441 1.00721 0.90258 0.83609 1.23115 0.89869 1.03048 1.01570 1.20950 1.00085 0.99134 0.89974 0.87509 1.19258 0.94981 0.95723 0.93642 1.21265 1.00529 0.95973 0.95540 1.21285 0.95055 0.99682 0.94734 1.21943 0.99685 1.01588 0.95213 1.96706 1.91915 1.81514 1.26472 1.21251 0.99667 0.94750 0.95263 1.21166 0.96303 1.00648 0.94970 0.84479 0.86218 0.91530 0.84974 0.90280 0.83488 0.83259 0.83533 0.84482 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.50 -22.54 18.54 20.01 0.37 -22.17 16 2 C 0.26 10.64 13.40 89.44 1.20 11.84 16 3 C 0.22 8.16 4.91 84.57 0.42 8.57 16 4 N -0.45 -20.37 2.60 -645.40 -1.68 -22.05 16 5 C -0.35 -17.76 9.27 84.04 0.78 -16.98 16 6 H 0.08 4.51 7.43 -2.91 -0.02 4.49 16 7 C 0.01 0.43 4.78 84.93 0.41 0.84 16 8 N -0.89 -43.72 9.74 21.66 0.21 -43.51 16 9 Si 0.98 39.42 29.61 68.60 2.03 41.45 16 10 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 11 H -0.29 -11.58 7.11 99.48 0.71 -10.87 16 12 H -0.28 -11.40 7.11 99.48 0.71 -10.70 16 13 C 0.48 21.03 7.34 87.66 0.64 21.67 16 14 O -0.62 -32.56 15.92 -3.07 -0.05 -32.61 16 15 C -0.17 -5.28 4.76 -11.53 -0.05 -5.33 16 16 H 0.15 3.67 6.55 -2.39 -0.02 3.65 16 17 C -0.14 -3.95 9.56 30.62 0.29 -3.66 16 18 C -0.08 -2.33 5.56 -11.51 -0.06 -2.39 16 19 H 0.11 3.47 7.67 -2.39 -0.02 3.45 16 20 C -0.04 -0.81 5.61 -19.86 -0.11 -0.92 16 21 C -0.11 -2.19 9.29 22.27 0.21 -1.98 16 22 C -0.09 -1.55 9.79 22.29 0.22 -1.33 16 23 C -0.11 -1.94 6.22 22.31 0.14 -1.80 16 24 Br -0.05 -0.85 33.70 -20.37 -0.69 -1.54 16 25 C -0.09 -1.67 9.79 22.28 0.22 -1.45 16 26 C -0.11 -2.36 9.74 22.26 0.22 -2.15 16 27 H 0.14 3.54 6.30 -2.39 -0.02 3.53 16 28 H 0.12 4.53 6.60 -2.39 -0.02 4.51 16 29 H 0.27 13.06 8.31 -92.70 -0.77 12.29 16 30 H 0.13 2.89 6.18 -2.38 -0.01 2.88 16 31 H 0.08 2.64 8.14 -2.39 -0.02 2.62 16 32 H 0.15 2.36 6.03 -2.91 -0.02 2.35 16 33 H 0.15 2.04 8.06 -2.91 -0.02 2.01 16 34 H 0.15 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 Total: -1.00 -65.14 328.84 5.85 -59.30 By element: Atomic # 1 Polarization: 15.06 SS G_CDS: 1.14 Total: 16.21 kcal Atomic # 6 Polarization: 0.43 SS G_CDS: 4.50 Total: 4.93 kcal Atomic # 7 Polarization: -86.64 SS G_CDS: -1.10 Total: -87.74 kcal Atomic # 8 Polarization: -32.56 SS G_CDS: -0.05 Total: -32.61 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Atomic # 35 Polarization: -0.85 SS G_CDS: -0.69 Total: -1.54 kcal Total: -65.14 5.85 -59.30 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000346767099.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.587 kcal (2) G-P(sol) polarization free energy of solvation -65.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds