Wall clock time and date at job start Wed Apr 1 2020 05:31:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45202 * 1 3 3 C 1.34231 * 116.99819 * 2 1 4 4 O 1.20828 * 120.00292 * 0.02562 * 3 2 1 5 5 C 1.50705 * 119.99772 * 180.02562 * 3 2 1 6 6 N 1.46499 * 109.46952 * 179.97438 * 5 3 2 7 7 C 1.36883 * 119.99984 * 264.44368 * 6 5 3 8 8 H 1.08008 * 119.99604 * 131.90402 * 7 6 5 9 9 C 1.38996 * 120.00365 * 311.90454 * 7 6 5 10 10 N 1.31399 * 120.00319 * 170.39236 * 9 7 6 11 11 Si 1.86804 * 120.00039 * 350.39590 * 9 7 6 12 12 H 1.48498 * 109.47428 * 91.69008 * 11 9 7 13 13 H 1.48506 * 109.47086 * 211.68724 * 11 9 7 14 14 H 1.48500 * 109.47111 * 331.68364 * 11 9 7 15 15 C 1.34776 * 119.99982 * 84.45227 * 6 5 3 16 16 O 1.21751 * 119.99958 * 3.71086 * 15 6 5 17 17 C 1.46447 * 120.00102 * 183.71221 * 15 6 5 18 18 C 1.36769 * 125.46232 * 173.52737 * 17 15 6 19 19 C 1.37446 * 113.27946 * 180.02562 * 18 17 15 20 20 C 1.33851 * 115.10686 * 0.02562 * 19 18 17 21 21 S 1.76198 * 124.51376 * 179.97438 * 20 19 18 22 22 N 1.65604 * 107.21474 * 90.00334 * 21 20 19 23 23 O 1.42101 * 106.40329 * 203.54451 * 21 20 19 24 24 O 1.42107 * 106.40342 * 336.46573 * 21 20 19 25 25 S 1.70616 * 110.96735 * 359.72875 * 20 19 18 26 26 H 1.09000 * 109.46996 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47051 * 299.99942 * 1 2 3 28 28 H 1.09001 * 109.47031 * 59.99661 * 1 2 3 29 29 H 1.09006 * 109.47018 * 60.00171 * 5 3 2 30 30 H 1.08998 * 109.47440 * 300.00438 * 5 3 2 31 31 H 0.97003 * 120.00336 * 180.02562 * 10 9 7 32 32 H 1.08006 * 123.36437 * 359.97438 * 18 17 15 33 33 H 1.08000 * 122.44430 * 179.97438 * 19 18 17 34 34 H 0.97005 * 119.99762 * 150.00181 * 22 21 20 35 35 H 0.97000 * 120.00405 * 329.99951 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5664 1.2749 -0.0006 6 7 3.9817 2.6798 -0.0011 7 6 4.2854 3.3033 -1.1812 8 1 3.8651 4.2732 -1.4032 9 6 5.1344 2.6883 -2.0938 10 7 5.2782 3.1908 -3.2994 11 14 6.0711 1.1473 -1.6065 12 1 5.2748 -0.0521 -1.9707 13 1 7.3728 1.1126 -2.3206 14 1 6.3106 1.1563 -0.1410 15 6 4.0650 3.3583 1.1605 16 8 3.8608 2.7862 2.2156 17 6 4.4010 4.7836 1.1534 18 6 4.3934 5.6061 2.2461 19 6 4.7506 6.9008 1.9540 20 6 5.0404 7.1337 0.6682 21 16 5.5253 8.6995 0.0218 22 7 7.1765 8.7800 0.1195 23 8 5.2057 8.6785 -1.3626 24 8 5.0219 9.6781 0.9210 25 16 4.8844 5.7108 -0.2602 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 3.9557 0.7809 -0.8909 30 1 3.9565 0.7805 0.8891 31 1 5.8705 2.7614 -3.9364 32 1 4.1321 5.2718 3.2394 33 1 4.7933 7.6739 2.7069 34 1 7.6757 9.3016 -0.5284 35 1 7.6444 8.3058 0.8245 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000348797013.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:31:12 Heat of formation + Delta-G solvation = -145.980789 kcal Electronic energy + Delta-G solvation = -26464.722777 eV Core-core repulsion = 22296.691577 eV Total energy + Delta-G solvation = -4168.031200 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.24756 -39.00444 -37.20326 -36.74201 -36.01972 -35.58871 -35.17222 -33.09455 -32.55262 -30.27723 -28.68973 -26.80367 -25.67671 -24.16954 -21.50852 -20.23995 -19.99154 -19.04191 -18.69112 -17.61736 -17.28352 -17.12558 -16.88384 -16.13220 -15.92332 -15.71070 -15.57176 -15.09679 -14.68607 -14.38411 -14.31007 -13.53516 -13.30961 -13.13010 -12.92019 -12.50348 -12.36172 -12.07381 -12.05956 -11.97866 -11.83600 -11.78889 -11.75100 -11.41892 -11.08562 -10.94546 -10.56466 -10.50374 -10.40619 -10.21892 -9.95683 -9.50949 -9.23275 -8.72513 -8.28364 -7.92684 -6.95480 -4.81005 0.56627 0.81991 2.18075 2.53558 2.60344 2.65623 2.76243 2.92302 2.93742 2.98207 3.44698 3.67554 3.83564 3.89220 3.92355 4.48201 5.00843 5.21040 5.28476 5.31833 5.39150 5.52562 5.62831 5.66558 5.73425 5.81903 6.04378 6.22630 6.50878 6.65361 6.76158 6.80531 7.10187 7.50683 7.60270 8.18147 8.35353 8.70089 9.06941 10.07646 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.014623 B = 0.004133 C = 0.003648 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1914.350787 B = 6773.707085 C = 7673.699609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 O -0.367 6.367 3 C 0.450 3.550 4 O -0.489 6.489 5 C 0.109 3.891 6 N -0.446 5.446 7 C -0.359 4.359 8 H 0.119 0.881 9 C 0.081 3.919 10 N -0.820 5.820 11 Si 0.874 3.126 12 H -0.261 1.261 13 H -0.273 1.273 14 H -0.250 1.250 15 C 0.561 3.439 16 O -0.571 6.571 17 C -0.197 4.197 18 C -0.124 4.124 19 C -0.018 4.018 20 C -0.913 4.913 21 S 2.731 3.269 22 N -1.250 6.250 23 O -0.962 6.962 24 O -0.969 6.969 25 S 0.455 5.545 26 H 0.096 0.904 27 H 0.059 0.941 28 H 0.060 0.940 29 H 0.113 0.887 30 H 0.116 0.884 31 H 0.289 0.711 32 H 0.147 0.853 33 H 0.138 0.862 34 H 0.418 0.582 35 H 0.416 0.584 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.134 -0.082 3.763 4.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.058 4.058 2 O -0.284 6.284 3 C 0.290 3.710 4 O -0.374 6.374 5 C -0.016 4.016 6 N -0.167 5.167 7 C -0.493 4.493 8 H 0.135 0.865 9 C -0.134 4.134 10 N -0.450 5.450 11 Si 0.698 3.302 12 H -0.187 1.187 13 H -0.198 1.198 14 H -0.173 1.173 15 C 0.351 3.649 16 O -0.455 6.455 17 C -0.322 4.322 18 C -0.157 4.157 19 C -0.056 4.056 20 C -1.118 5.118 21 S 2.818 3.182 22 N -0.923 5.923 23 O -0.952 6.952 24 O -0.959 6.959 25 S 0.735 5.265 26 H 0.115 0.885 27 H 0.078 0.922 28 H 0.079 0.921 29 H 0.130 0.870 30 H 0.134 0.866 31 H 0.100 0.900 32 H 0.165 0.835 33 H 0.156 0.844 34 H 0.247 0.753 35 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges 2.363 0.366 2.149 3.215 hybrid contribution 0.381 -0.993 1.848 2.132 sum 2.744 -0.626 3.997 4.888 Atomic orbital electron populations 1.23170 0.77177 1.03020 1.02392 1.86507 1.22916 1.34144 1.84821 1.24554 0.92669 0.81356 0.72398 1.90642 1.66583 1.36274 1.43891 1.21388 0.87175 0.87563 1.05450 1.43183 1.58288 1.08713 1.06492 1.19023 1.29963 1.05087 0.95233 0.86523 1.25577 0.94797 0.98526 0.94479 1.69651 1.32771 1.39225 1.03400 0.86891 0.80309 0.81870 0.81120 1.18662 1.19805 1.17336 1.17160 0.79219 0.85030 0.83448 1.90717 1.54602 1.69288 1.30888 1.25186 1.08979 0.98407 0.99579 1.20649 1.03537 0.92234 0.99283 1.19394 0.95934 0.96704 0.93574 1.35961 1.30428 1.32603 1.12758 1.00526 0.71968 0.72489 0.73184 1.53176 1.28166 1.67076 1.43884 1.93608 1.82655 1.86778 1.32178 1.93562 1.78424 1.57098 1.66795 1.85178 1.51366 0.88224 1.01728 0.88545 0.92216 0.92082 0.86990 0.86603 0.90043 0.83530 0.84392 0.75269 0.75691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 44. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.48 10.56 101.05 1.07 1.55 16 2 O -0.37 -6.25 10.57 -39.26 -0.41 -6.67 16 3 C 0.45 9.16 7.99 36.01 0.29 9.45 16 4 O -0.49 -11.38 16.05 -18.75 -0.30 -11.69 16 5 C 0.11 2.20 4.44 -5.19 -0.02 2.18 16 6 N -0.45 -10.12 1.59 -117.66 -0.19 -10.30 16 7 C -0.36 -8.44 7.43 -15.02 -0.11 -8.55 16 8 H 0.12 2.92 5.42 -30.15 -0.16 2.76 16 9 C 0.08 1.85 5.41 -17.46 -0.09 1.76 16 10 N -0.82 -19.47 13.96 55.50 0.77 -18.69 16 11 Si 0.87 17.03 24.85 -169.99 -4.22 12.80 16 12 H -0.26 -4.76 6.75 56.52 0.38 -4.38 16 13 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 14 H -0.25 -4.88 7.08 56.52 0.40 -4.48 16 15 C 0.56 12.94 7.40 -12.96 -0.10 12.84 16 16 O -0.57 -13.81 16.50 5.14 0.08 -13.73 16 17 C -0.20 -4.13 6.30 -36.81 -0.23 -4.36 16 18 C -0.12 -2.26 10.02 -40.40 -0.40 -2.67 16 19 C -0.02 -0.30 9.77 -41.41 -0.40 -0.70 16 20 C -0.91 -15.50 6.35 29.19 0.19 -15.32 16 21 S 2.73 41.30 6.41 -107.50 -0.69 40.61 16 22 N -1.25 -12.80 9.52 60.35 0.57 -12.22 16 23 O -0.96 -17.65 17.83 -57.17 -1.02 -18.66 16 24 O -0.97 -16.71 17.74 -57.17 -1.01 -17.73 16 25 S 0.46 9.02 18.09 -107.50 -1.94 7.07 16 26 H 0.10 0.90 8.14 -51.93 -0.42 0.48 16 27 H 0.06 0.79 8.13 -51.93 -0.42 0.36 16 28 H 0.06 0.80 8.13 -51.93 -0.42 0.38 16 29 H 0.11 2.14 4.01 -51.93 -0.21 1.93 16 30 H 0.12 2.15 7.54 -51.93 -0.39 1.76 16 31 H 0.29 6.27 8.31 -40.82 -0.34 5.93 16 32 H 0.15 2.49 8.06 -52.48 -0.42 2.06 16 33 H 0.14 1.88 8.02 -52.49 -0.42 1.46 16 34 H 0.42 3.36 8.96 -34.47 -0.31 3.05 16 35 H 0.42 3.33 8.96 -34.48 -0.31 3.02 16 LS Contribution 333.39 15.07 5.02 5.02 Total: -1.00 -32.68 333.39 -5.81 -38.49 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: -2.65 Total: 9.51 kcal Atomic # 6 Polarization: -3.99 SS G_CDS: 0.17 Total: -3.82 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 1.16 Total: -41.22 kcal Atomic # 8 Polarization: -65.81 SS G_CDS: -2.66 Total: -68.47 kcal Atomic # 14 Polarization: 17.03 SS G_CDS: -4.22 Total: 12.80 kcal Atomic # 16 Polarization: 50.32 SS G_CDS: -2.63 Total: 47.68 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.68 -5.81 -38.49 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000348797013.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.495 kcal (2) G-P(sol) polarization free energy of solvation -32.676 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.810 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.981 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds