Wall clock time and date at job start Wed Apr 1 2020 05:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 S 1.75884 * 125.20661 * 2 1 4 4 C 1.75884 * 90.97205 * 180.02562 * 3 2 1 5 5 S 1.76200 * 125.20267 * 179.97438 * 4 3 2 6 6 O 1.42096 * 106.39882 * 156.48397 * 5 4 3 7 7 O 1.42103 * 106.40193 * 23.56870 * 5 4 3 8 8 N 1.65593 * 107.22178 * 270.02814 * 5 4 3 9 9 C 1.47584 * 134.49803 * 89.99723 * 8 5 4 10 10 C 1.53946 * 86.12025 * 155.36171 * 9 8 5 11 11 O 1.42897 * 113.74068 * 269.15867 * 10 9 8 12 12 C 1.50700 * 113.74246 * 137.95222 * 10 9 8 13 13 H 1.07998 * 119.99659 * 4.91778 * 12 10 9 14 14 C 1.37870 * 120.00275 * 184.91298 * 12 10 9 15 15 N 1.31521 * 119.99939 * 13.83955 * 14 12 10 16 16 Si 1.86793 * 120.00241 * 193.83635 * 14 12 10 17 17 H 1.48503 * 109.47305 * 180.02562 * 16 14 12 18 18 H 1.48502 * 109.47166 * 299.99995 * 16 14 12 19 19 H 1.48499 * 109.46987 * 59.99962 * 16 14 12 20 20 C 1.47585 * 134.49149 * 270.00557 * 8 5 4 21 21 C 1.33384 * 109.59267 * 0.26257 * 4 3 2 22 22 C 1.33392 * 125.20485 * 180.02562 * 2 1 3 23 23 N 1.48030 * 122.53425 * 359.95931 * 22 2 1 24 24 O 1.21806 * 119.99987 * 180.02562 * 23 22 2 25 25 O 1.21804 * 120.00326 * 359.97438 * 23 22 2 26 26 H 1.09005 * 109.47232 * 359.97193 * 1 2 3 27 27 H 1.08992 * 109.47601 * 119.97501 * 1 2 3 28 28 H 1.08999 * 109.47395 * 239.97966 * 1 2 3 29 29 H 1.09003 * 113.76727 * 41.05741 * 9 8 5 30 30 H 1.09000 * 113.86995 * 269.68082 * 9 8 5 31 31 H 0.96698 * 114.00098 * 171.44601 * 11 10 9 32 32 H 0.97007 * 119.99483 * 5.87247 * 15 14 12 33 33 H 1.08994 * 113.77423 * 90.33548 * 20 8 5 34 34 H 1.09010 * 113.76672 * 318.93394 * 20 8 5 35 35 H 1.08002 * 122.54015 * 179.70969 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5210 1.4371 0.0000 4 6 3.9751 0.4476 -0.0008 5 16 5.6248 1.0665 -0.0019 6 8 6.4398 0.0372 0.5416 7 8 5.5620 2.3774 0.5431 8 7 6.0826 1.2392 -1.5839 9 6 5.9988 2.3327 -2.5714 10 6 7.1965 1.6581 -3.2645 11 8 8.4657 2.1357 -2.8139 12 6 7.0839 1.6167 -4.7667 13 1 6.2580 2.1076 -5.2599 14 6 8.0351 0.9522 -5.5113 15 7 8.8783 0.1335 -4.9210 16 14 8.1262 1.2146 -7.3584 17 1 9.2260 0.3909 -7.9218 18 1 6.8388 0.8121 -7.9797 19 1 8.3859 2.6489 -7.6424 20 6 6.7382 0.3614 -2.5726 21 6 3.6379 -0.8429 -0.0068 22 6 2.2760 -1.0899 -0.0005 23 7 1.7152 -2.4599 -0.0002 24 8 2.4607 -3.4232 -0.0002 25 8 0.5082 -2.6240 0.0010 26 1 -0.3634 1.0277 0.0005 27 1 -0.3634 -0.5134 -0.8901 28 1 -0.3634 -0.5141 0.8898 29 1 6.2264 3.3157 -2.1589 30 1 5.0846 2.3220 -3.1649 31 1 9.2180 1.6279 -3.1474 32 1 8.7780 -0.0687 -3.9776 33 1 6.0408 -0.2301 -3.1657 34 1 7.5564 -0.2297 -2.1610 35 1 4.3720 -1.6351 -0.0129 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000358910414.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:57 Heat of formation + Delta-G solvation = -52.735239 kcal Electronic energy + Delta-G solvation = -26324.115344 eV Core-core repulsion = 22160.127574 eV Total energy + Delta-G solvation = -4163.987769 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.43563 -38.99252 -38.70054 -37.13480 -36.82229 -35.83358 -34.43882 -32.93420 -32.45149 -29.24967 -27.85908 -25.90519 -25.70321 -24.52847 -23.99394 -21.43278 -20.07994 -19.18509 -18.79429 -18.27516 -18.03910 -17.85265 -17.72455 -17.01694 -16.44029 -15.72195 -15.05322 -14.71393 -14.54287 -14.45552 -14.01209 -13.77786 -13.56210 -13.38174 -13.08458 -12.96288 -12.64449 -12.17867 -12.09234 -12.05072 -11.95817 -11.73975 -11.61245 -11.48280 -11.34504 -11.20167 -11.17582 -10.95055 -10.62413 -10.26260 -10.05970 -9.46410 -9.43133 -9.01522 -8.82710 -8.20510 -6.74318 -4.55151 -0.60127 0.12656 0.24444 0.41498 0.75912 1.53050 1.70502 2.96365 3.26248 3.31073 3.48683 3.68420 3.76836 4.03618 4.24829 4.26915 4.61307 4.73309 4.84938 4.88752 4.93721 5.02789 5.16696 5.34082 5.60326 5.62549 5.94245 6.00765 6.07021 6.28593 6.29463 6.56906 7.08139 7.42124 7.56868 8.01163 8.37848 8.77223 9.15141 10.57051 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.003568 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.953243 B = 7845.752144 C = 8580.043727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C -0.089 4.089 3 S 0.335 5.665 4 C -0.791 4.791 5 S 2.713 3.287 6 O -0.941 6.941 7 O -0.949 6.949 8 N -1.016 6.016 9 C 0.139 3.861 10 C 0.226 3.774 11 O -0.565 6.565 12 C -0.618 4.618 13 H 0.066 0.934 14 C 0.038 3.962 15 N -0.894 5.894 16 Si 1.067 2.933 17 H -0.280 1.280 18 H -0.286 1.286 19 H -0.283 1.283 20 C 0.094 3.906 21 C 0.036 3.964 22 C -0.087 4.087 23 N 0.048 4.952 24 O -0.154 6.154 25 O -0.158 6.158 26 H 0.084 0.916 27 H 0.105 0.895 28 H 0.103 0.897 29 H 0.081 0.919 30 H 0.089 0.911 31 H 0.377 0.623 32 H 0.270 0.730 33 H 0.086 0.914 34 H 0.074 0.926 35 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.062 1.432 7.549 16.909 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.211 4.211 3 S 0.599 5.401 4 C -0.987 4.987 5 S 2.799 3.201 6 O -0.932 6.932 7 O -0.939 6.939 8 N -0.858 5.858 9 C 0.014 3.986 10 C 0.183 3.817 11 O -0.373 6.373 12 C -0.657 4.657 13 H 0.085 0.915 14 C -0.169 4.169 15 N -0.530 5.530 16 Si 0.893 3.107 17 H -0.205 1.205 18 H -0.212 1.212 19 H -0.210 1.210 20 C -0.032 4.032 21 C 0.005 3.995 22 C -0.184 4.184 23 N 0.567 4.433 24 O -0.370 6.370 25 O -0.373 6.373 26 H 0.103 0.897 27 H 0.123 0.877 28 H 0.122 0.878 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.227 0.773 32 H 0.082 0.918 33 H 0.104 0.896 34 H 0.092 0.908 35 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -14.203 3.845 7.543 16.535 hybrid contribution -1.213 -2.323 0.950 2.787 sum -15.415 1.522 8.492 17.666 Atomic orbital electron populations 1.20813 0.84439 1.04493 1.05933 1.25552 1.03144 0.96925 0.95524 1.84480 0.89904 1.01327 1.64377 1.36799 1.30075 1.06014 1.25783 1.01849 0.71847 0.73497 0.72949 1.93584 1.63852 1.59224 1.76530 1.93574 1.86429 1.37175 1.76721 1.60349 1.71740 1.26745 1.27004 1.23045 0.99168 0.90283 0.86086 1.20098 0.81721 0.87826 0.92096 1.86230 1.16148 1.59625 1.75252 1.22244 1.14588 1.39079 0.89819 0.91546 1.25992 0.91908 0.91818 1.07159 1.70941 1.37249 1.30950 1.13880 0.83579 0.76585 0.76663 0.73836 1.20507 1.21180 1.20959 1.24212 0.95387 0.97351 0.86222 1.19407 0.93949 0.96442 0.89708 1.20178 0.93954 0.82985 1.21323 1.43006 1.00713 1.02054 0.97530 1.94596 1.57872 1.31031 1.53516 1.94502 0.97292 1.91975 1.53561 0.89737 0.87721 0.87839 0.90097 0.89302 0.77328 0.91799 0.89591 0.90760 0.80346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.66 8.76 36.00 0.32 -0.35 16 2 C -0.09 -0.90 6.51 -36.00 -0.23 -1.13 16 3 S 0.33 3.51 23.20 -107.50 -2.49 1.02 16 4 C -0.79 -10.93 6.57 29.04 0.19 -10.74 16 5 S 2.71 46.21 6.38 -107.50 -0.69 45.53 16 6 O -0.94 -18.23 17.77 -57.17 -1.02 -19.24 16 7 O -0.95 -17.44 17.88 -57.17 -1.02 -18.46 16 8 N -1.02 -18.53 4.11 -118.67 -0.49 -19.01 16 9 C 0.14 2.57 8.36 -2.97 -0.02 2.55 16 10 C 0.23 5.00 1.08 -90.84 -0.10 4.90 16 11 O -0.57 -13.24 13.45 -35.23 -0.47 -13.71 16 12 C -0.62 -14.77 8.56 -34.44 -0.29 -15.06 16 13 H 0.07 1.55 7.85 -52.49 -0.41 1.13 16 14 C 0.04 0.93 5.26 -17.82 -0.09 0.83 16 15 N -0.89 -22.92 12.80 55.43 0.71 -22.21 16 16 Si 1.07 21.94 29.93 -169.99 -5.09 16.86 16 17 H -0.28 -5.88 7.11 56.52 0.40 -5.48 16 18 H -0.29 -5.63 7.11 56.52 0.40 -5.22 16 19 H -0.28 -5.68 7.11 56.52 0.40 -5.28 16 20 C 0.09 1.87 7.40 -2.97 -0.02 1.85 16 21 C 0.04 0.49 9.38 -41.21 -0.39 0.11 16 22 C -0.09 -1.11 6.79 -81.57 -0.55 -1.66 16 23 N 0.05 0.67 4.46 33.16 0.15 0.82 16 24 O -0.15 -2.34 18.78 -29.46 -0.55 -2.89 16 25 O -0.16 -2.06 16.59 -29.46 -0.49 -2.55 16 26 H 0.08 0.36 8.14 -51.93 -0.42 -0.07 16 27 H 0.10 0.69 7.73 -51.93 -0.40 0.29 16 28 H 0.10 0.65 7.72 -51.93 -0.40 0.25 16 29 H 0.08 1.46 8.14 -51.93 -0.42 1.04 16 30 H 0.09 1.43 8.09 -51.93 -0.42 1.01 16 31 H 0.38 8.72 6.95 45.56 0.32 9.04 16 32 H 0.27 6.74 5.52 -40.82 -0.23 6.52 16 33 H 0.09 1.64 8.09 -51.93 -0.42 1.22 16 34 H 0.07 1.51 7.80 -51.92 -0.41 1.10 16 35 H 0.18 2.36 7.93 -52.49 -0.42 1.95 16 LS Contribution 339.35 15.07 5.11 5.11 Total: -1.00 -29.98 339.35 -9.97 -39.95 By element: Atomic # 1 Polarization: 9.92 SS G_CDS: -2.43 Total: 7.50 kcal Atomic # 6 Polarization: -17.49 SS G_CDS: -1.20 Total: -18.69 kcal Atomic # 7 Polarization: -40.78 SS G_CDS: 0.37 Total: -40.41 kcal Atomic # 8 Polarization: -53.31 SS G_CDS: -3.55 Total: -56.86 kcal Atomic # 14 Polarization: 21.94 SS G_CDS: -5.09 Total: 16.86 kcal Atomic # 16 Polarization: 49.73 SS G_CDS: -3.18 Total: 46.55 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.98 -9.97 -39.95 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358910414.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.784 kcal (2) G-P(sol) polarization free energy of solvation -29.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.967 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.735 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds