Wall clock time and date at job start Wed Apr 1 2020 05:27:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 S 1.75884 * 125.20661 * 2 1 4 4 C 1.75884 * 90.97205 * 180.02562 * 3 2 1 5 5 S 1.76200 * 125.20267 * 179.97438 * 4 3 2 6 6 O 1.42096 * 106.39882 * 156.48397 * 5 4 3 7 7 O 1.42103 * 106.40193 * 23.56870 * 5 4 3 8 8 N 1.65593 * 107.22178 * 270.02814 * 5 4 3 9 9 C 1.47584 * 134.49803 * 89.99723 * 8 5 4 10 10 C 1.53946 * 86.12025 * 155.36171 * 9 8 5 11 11 O 1.42897 * 113.74068 * 269.15867 * 10 9 8 12 12 C 1.50700 * 113.74246 * 137.95222 * 10 9 8 13 13 H 1.07998 * 119.99659 * 4.91778 * 12 10 9 14 14 C 1.37870 * 120.00275 * 184.91298 * 12 10 9 15 15 N 1.31521 * 119.99939 * 13.83955 * 14 12 10 16 16 Si 1.86793 * 120.00241 * 193.83635 * 14 12 10 17 17 H 1.48503 * 109.47305 * 180.02562 * 16 14 12 18 18 H 1.48502 * 109.47166 * 299.99995 * 16 14 12 19 19 H 1.48499 * 109.46987 * 59.99962 * 16 14 12 20 20 C 1.47585 * 134.49149 * 270.00557 * 8 5 4 21 21 C 1.33384 * 109.59267 * 0.26257 * 4 3 2 22 22 C 1.33392 * 125.20485 * 180.02562 * 2 1 3 23 23 N 1.48030 * 122.53425 * 359.95931 * 22 2 1 24 24 O 1.21806 * 119.99987 * 180.02562 * 23 22 2 25 25 O 1.21804 * 120.00326 * 359.97438 * 23 22 2 26 26 H 1.09005 * 109.47232 * 359.97193 * 1 2 3 27 27 H 1.08992 * 109.47601 * 119.97501 * 1 2 3 28 28 H 1.08999 * 109.47395 * 239.97966 * 1 2 3 29 29 H 1.09003 * 113.76727 * 41.05741 * 9 8 5 30 30 H 1.09000 * 113.86995 * 269.68082 * 9 8 5 31 31 H 0.96698 * 114.00098 * 171.44601 * 11 10 9 32 32 H 0.97007 * 119.99483 * 5.87247 * 15 14 12 33 33 H 1.08994 * 113.77423 * 90.33548 * 20 8 5 34 34 H 1.09010 * 113.76672 * 318.93394 * 20 8 5 35 35 H 1.08002 * 122.54015 * 179.70969 * 21 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5210 1.4371 0.0000 4 6 3.9751 0.4476 -0.0008 5 16 5.6248 1.0665 -0.0019 6 8 6.4398 0.0372 0.5416 7 8 5.5620 2.3774 0.5431 8 7 6.0826 1.2392 -1.5839 9 6 5.9988 2.3327 -2.5714 10 6 7.1965 1.6581 -3.2645 11 8 8.4657 2.1357 -2.8139 12 6 7.0839 1.6167 -4.7667 13 1 6.2580 2.1076 -5.2599 14 6 8.0351 0.9522 -5.5113 15 7 8.8783 0.1335 -4.9210 16 14 8.1262 1.2146 -7.3584 17 1 9.2260 0.3909 -7.9218 18 1 6.8388 0.8121 -7.9797 19 1 8.3859 2.6489 -7.6424 20 6 6.7382 0.3614 -2.5726 21 6 3.6379 -0.8429 -0.0068 22 6 2.2760 -1.0899 -0.0005 23 7 1.7152 -2.4599 -0.0002 24 8 2.4607 -3.4232 -0.0002 25 8 0.5082 -2.6240 0.0010 26 1 -0.3634 1.0277 0.0005 27 1 -0.3634 -0.5134 -0.8901 28 1 -0.3634 -0.5141 0.8898 29 1 6.2264 3.3157 -2.1589 30 1 5.0846 2.3220 -3.1649 31 1 9.2180 1.6279 -3.1474 32 1 8.7780 -0.0687 -3.9776 33 1 6.0408 -0.2301 -3.1657 34 1 7.5564 -0.2297 -2.1610 35 1 4.3720 -1.6351 -0.0129 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000358910414.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:27:57 Heat of formation + Delta-G solvation = -75.012905 kcal Electronic energy + Delta-G solvation = -26325.081376 eV Core-core repulsion = 22160.127574 eV Total energy + Delta-G solvation = -4164.953802 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.037 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -43.47066 -40.60170 -39.68687 -38.57976 -37.87184 -37.29608 -36.16504 -34.30122 -33.76557 -30.17259 -29.50253 -27.26173 -26.82581 -26.24546 -24.98792 -22.51003 -21.73060 -20.23374 -20.14961 -19.86775 -19.20326 -18.89990 -18.77471 -18.48007 -17.64907 -17.11674 -16.76988 -16.17332 -15.70196 -15.54998 -15.40225 -15.10837 -14.93866 -14.54700 -14.25934 -13.83183 -13.74768 -13.63392 -13.57499 -13.51417 -13.19097 -13.10777 -12.92687 -12.85141 -12.64284 -12.56233 -12.42438 -12.33354 -12.14719 -11.90457 -11.14373 -11.01078 -10.72177 -10.47356 -10.31716 -9.91479 -8.63915 -6.45228 -1.52507 -1.11883 -0.80721 -0.63633 -0.23378 0.58205 0.68793 1.58936 1.63152 1.66913 1.87211 2.37639 2.58324 2.81889 2.93904 2.99286 3.17479 3.36506 3.68947 3.86130 3.96339 4.04544 4.04982 4.42380 4.44501 4.47743 4.49183 4.70105 4.79308 4.85412 4.96107 5.07318 5.48354 5.78606 6.13145 6.35649 6.48040 6.95233 7.31758 8.68315 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.013556 B = 0.003568 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2064.953243 B = 7845.752144 C = 8580.043727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.061 4.061 3 S 0.395 5.605 4 C -0.818 4.818 5 S 2.735 3.265 6 O -0.973 6.973 7 O -0.963 6.963 8 N -1.022 6.022 9 C 0.146 3.854 10 C 0.198 3.802 11 O -0.576 6.576 12 C -0.626 4.626 13 H 0.071 0.929 14 C -0.004 4.004 15 N -0.921 5.921 16 Si 1.109 2.891 17 H -0.290 1.290 18 H -0.269 1.269 19 H -0.275 1.275 20 C 0.101 3.899 21 C 0.040 3.960 22 C -0.114 4.114 23 N 0.050 4.950 24 O -0.215 6.215 25 O -0.121 6.121 26 H 0.118 0.882 27 H 0.114 0.886 28 H 0.116 0.884 29 H 0.085 0.915 30 H 0.117 0.883 31 H 0.373 0.627 32 H 0.264 0.736 33 H 0.093 0.907 34 H 0.061 0.939 35 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.431 2.823 7.385 20.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.185 4.185 3 S 0.660 5.340 4 C -1.019 5.019 5 S 2.825 3.175 6 O -0.964 6.964 7 O -0.953 6.953 8 N -0.863 5.863 9 C 0.021 3.979 10 C 0.155 3.845 11 O -0.384 6.384 12 C -0.665 4.665 13 H 0.089 0.911 14 C -0.206 4.206 15 N -0.558 5.558 16 Si 0.932 3.068 17 H -0.216 1.216 18 H -0.194 1.194 19 H -0.200 1.200 20 C -0.025 4.025 21 C 0.007 3.993 22 C -0.210 4.210 23 N 0.566 4.434 24 O -0.416 6.416 25 O -0.348 6.348 26 H 0.136 0.864 27 H 0.132 0.868 28 H 0.134 0.866 29 H 0.103 0.897 30 H 0.135 0.865 31 H 0.222 0.778 32 H 0.075 0.925 33 H 0.111 0.889 34 H 0.080 0.920 35 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -17.411 5.200 7.377 19.611 hybrid contribution -0.430 -2.653 1.095 2.902 sum -17.841 2.547 8.472 19.914 Atomic orbital electron populations 1.21158 0.81497 1.07154 1.06636 1.26106 1.04915 0.95835 0.91621 1.84299 0.87091 0.99771 1.62871 1.36083 1.29935 1.06980 1.28891 1.00673 0.72294 0.72677 0.71846 1.93545 1.65936 1.60006 1.76877 1.93552 1.87148 1.37964 1.76670 1.60129 1.72866 1.26245 1.27044 1.23091 0.98642 0.90225 0.85906 1.20450 0.82143 0.89849 0.92041 1.86214 1.16785 1.60004 1.75368 1.22533 1.14536 1.38350 0.91079 0.91087 1.27088 0.91798 0.91411 1.10301 1.71011 1.38507 1.32542 1.13774 0.83012 0.76861 0.76779 0.70150 1.21598 1.19418 1.20004 1.23930 0.95380 0.96583 0.86635 1.19410 0.94739 0.96229 0.88892 1.20143 0.93854 0.82896 1.24156 1.43123 1.00681 1.02401 0.97204 1.94622 1.58125 1.31790 1.57036 1.94453 0.97190 1.92121 1.51028 0.86353 0.86778 0.86640 0.89677 0.86491 0.77787 0.92482 0.88930 0.92039 0.81326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.90 8.76 71.23 0.62 -0.27 16 2 C -0.06 -1.01 6.51 24.59 0.16 -0.85 16 3 S 0.40 6.95 23.20 -56.49 -1.31 5.64 16 4 C -0.82 -21.59 6.57 66.72 0.44 -21.15 16 5 S 2.74 92.58 6.38 -56.49 -0.36 92.22 16 6 O -0.97 -38.63 17.77 -128.00 -2.28 -40.90 16 7 O -0.96 -34.53 17.88 -128.00 -2.29 -36.81 16 8 N -1.02 -37.01 4.11 -533.17 -2.19 -39.21 16 9 C 0.15 5.24 8.36 86.48 0.72 5.96 16 10 C 0.20 8.79 1.08 -10.88 -0.01 8.78 16 11 O -0.58 -27.64 13.45 -148.98 -2.00 -29.65 16 12 C -0.63 -29.71 8.56 25.60 0.22 -29.49 16 13 H 0.07 3.22 7.85 -2.91 -0.02 3.20 16 14 C 0.00 -0.22 5.26 84.65 0.45 0.23 16 15 N -0.92 -48.20 12.80 21.45 0.27 -47.92 16 16 Si 1.11 43.90 29.93 68.60 2.05 45.95 16 17 H -0.29 -11.88 7.11 99.48 0.71 -11.17 16 18 H -0.27 -9.84 7.11 99.48 0.71 -9.13 16 19 H -0.27 -10.36 7.11 99.48 0.71 -9.66 16 20 C 0.10 4.10 7.40 86.48 0.64 4.74 16 21 C 0.04 1.06 9.38 21.21 0.20 1.26 16 22 C -0.11 -2.69 6.79 35.32 0.24 -2.45 16 23 N 0.05 1.32 4.46 -48.99 -0.22 1.10 16 24 O -0.21 -6.69 18.78 18.88 0.35 -6.34 16 25 O -0.12 -2.83 16.59 18.88 0.31 -2.52 16 26 H 0.12 0.27 8.14 -2.38 -0.02 0.25 16 27 H 0.11 0.92 7.73 -2.39 -0.02 0.91 16 28 H 0.12 0.86 7.72 -2.39 -0.02 0.85 16 29 H 0.08 2.96 8.14 -2.39 -0.02 2.94 16 30 H 0.12 3.49 8.09 -2.39 -0.02 3.48 16 31 H 0.37 18.00 6.95 -74.06 -0.52 17.49 16 32 H 0.26 13.66 5.52 -92.70 -0.51 13.15 16 33 H 0.09 3.59 8.09 -2.39 -0.02 3.57 16 34 H 0.06 2.62 7.80 -2.38 -0.02 2.60 16 35 H 0.17 4.70 7.93 -2.91 -0.02 4.68 16 Total: -1.00 -65.48 339.35 -3.06 -68.55 By element: Atomic # 1 Polarization: 22.22 SS G_CDS: 0.91 Total: 23.14 kcal Atomic # 6 Polarization: -36.93 SS G_CDS: 3.68 Total: -33.25 kcal Atomic # 7 Polarization: -83.89 SS G_CDS: -2.14 Total: -86.02 kcal Atomic # 8 Polarization: -110.32 SS G_CDS: -5.90 Total: -116.22 kcal Atomic # 14 Polarization: 43.90 SS G_CDS: 2.05 Total: 45.95 kcal Atomic # 16 Polarization: 99.54 SS G_CDS: -1.67 Total: 97.87 kcal Total: -65.48 -3.06 -68.55 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000358910414.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.467 kcal (2) G-P(sol) polarization free energy of solvation -65.483 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.950 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds